Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g01030 Coffea canephora HOM05D003575 ORTHO05D003587 7.2e-86 320.5 154 100.0
Actinidia07857 Actinidia chinensis HOM05D003575 ORTHO05D003587 1.2e-24 117.1 100 56.0
CSS0012601 Camellia sinensis var. sinensis HOM05D003575 ORTHO05D003587 2.3e-23 112.8 123 47.2
Oeu029955.1 Olea europaea HOM05D003575 ORTHO05D003587 6.6e-23 111.3 100 50.0
CSS0035464 Camellia sinensis var. sinensis HOM05D003575 ORTHO05D003587 8.7e-23 110.9 107 52.3
Hma1.2p1_0599F.1_g187070 Hydrangea macrophylla HOM05D003575 ORTHO05D003587 8.7e-23 110.9 123 48.0
DCAR_019672 Daucus carota HOM05D003575 ORTHO05D003587 5.6e-22 108.2 150 42.0
PGSC0003DMG401004292 Solanum tuberosum HOM05D003575 ORTHO05D003587 7.3e-22 107.8 111 46.8
vmacro12070 Vaccinium macrocarpon HOM05D003575 ORTHO05D003587 7.3e-22 107.8 100 50.0
Sopen12g002030 Solanum pennellii HOM05D003575 ORTHO05D003587 1.6e-21 106.7 111 46.8
Thecc.01G197600 Theobroma cacao HOM05D003575 ORTHO05D003587 3.6e-21 105.5 102 51.0
COL.COLO4_19638 Corchorus olitorius HOM05D003575 ORTHO05D003587 6.2e-21 104.8 102 49.0
Duzib133G0340 Durio zibethinus HOM05D003575 ORTHO05D003587 8.1e-21 104.4 102 48.0
Manes.12G063604 Manihot esculenta HOM05D003575 ORTHO05D003587 1.1e-20 104.0 106 48.1
Solyc12g006060.2 Solanum lycopersicum HOM05D003575 ORTHO05D003587 1.1e-20 104.0 101 49.5
TWI18G0759 Tripterygium wilfordii HOM05D003575 ORTHO05D003587 1.1e-20 104.0 102 48.0
Rhsim06G0177900 Rhododendron simsii HOM05D003575 ORTHO05D003587 1.4e-20 103.6 100 50.0
Nitab4.5_0004644g0050 Nicotiana tabacum HOM05D003575 ORTHO05D003587 2.4e-20 102.8 116 44.8
Migut.L00790 Erythranthe guttata HOM05D003575 ORTHO05D003587 6.9e-20 101.3 112 42.9
TWI36G1168 Tripterygium wilfordii HOM05D003575 ORTHO05D003587 6.9e-20 101.3 105 44.8
Glyma.13G007400 Glycine max HOM05D003575 ORTHO05D003587 1.2e-19 100.5 134 38.8
Gohir.D07G092200 Gossypium hirsutum HOM05D003575 ORTHO05D003587 2.0e-19 99.8 116 44.0
Gorai.001G098800 Gossypium raimondii HOM05D003575 ORTHO05D003587 2.0e-19 99.8 116 44.0
Peaxi162Scf00047g02035 Petunia axillaris HOM05D003575 ORTHO05D003587 2.0e-19 99.8 101 44.6
SalBow1G3222 Salvia bowleyana HOM05D003575 ORTHO05D003587 2.0e-19 99.8 111 45.0
PGSC0003DMG400017406 Solanum tuberosum HOM05D003575 ORTHO05D003587 3.4e-19 99.0 101 45.5
Ca_16343_v3 Cicer arietinum L. HOM05D003575 ORTHO05D003587 5.8e-19 98.2 104 48.1
Gohir.D11G155100 Gossypium hirsutum HOM05D003575 ORTHO05D003587 5.8e-19 98.2 102 46.1
MSTRG.426 Avicennia marina HOM05D003575 ORTHO05D003587 7.6e-19 97.8 100 48.0
Glyma.13G186300 Glycine max HOM05D003575 ORTHO05D003587 7.6e-19 97.8 123 44.7
Gohir.A11G148300 Gossypium hirsutum HOM05D003575 ORTHO05D003587 7.6e-19 97.8 102 46.1
arahy.Tifrunner.gnm1.ann1.04VE6P Arachis hypogaea HOM05D003575 ORTHO05D003587 9.9e-19 97.4 105 44.8
arahy.Tifrunner.gnm1.ann1.F2CSMS Arachis hypogaea HOM05D003575 ORTHO05D003587 9.9e-19 97.4 105 44.8
arahy.Tifrunner.gnm1.ann1.RMR7W1 Arachis hypogaea HOM05D003575 ORTHO05D003587 9.9e-19 97.4 105 44.8
Nitab4.5_0000622g0080 Nicotiana tabacum HOM05D003575 ORTHO05D003587 9.9e-19 97.4 102 47.1
Solyc07g045320.3 Solanum lycopersicum HOM05D003575 ORTHO05D003587 9.9e-19 97.4 101 44.6
Gorai.007G165400 Gossypium raimondii HOM05D003575 ORTHO05D003587 1.7e-18 96.7 102 46.1
Potri.002G216900 Populus trichocarpa HOM05D003575 ORTHO05D003587 1.7e-18 96.7 102 46.1
Haze_12603 Corylus avellana HOM05D003366 ORTHO05D004045 2.2e-18 96.3 100 51.0
Gohir.A07G087300 Gossypium hirsutum HOM05D003575 ORTHO05D003587 2.9e-18 95.9 118 42.4
Haze_12614 Corylus avellana HOM05D003366 ORTHO05D004045 3.8e-18 95.5 100 50.0
Sopen07g023850 Solanum pennellii HOM05D003575 ORTHO05D003587 3.8e-18 95.5 101 43.6
Medtr6g042090 Medicago truncatula HOM05D003575 ORTHO05D003587 8.4e-18 94.4 110 43.6
CANSAT64G0731 Cannabis sativa HOM05D003575 ORTHO05D003587 1.1e-17 94.0 100 43.0
Sabra02G0168700 Salix brachista HOM05D003575 ORTHO05D003587 1.1e-17 94.0 117 41.9
Medtr3g082725 Medicago truncatula HOM05D003575 ORTHO05D003587 1.4e-17 93.6 101 47.5
Lalb_Chr14g0362581 Lupinus albus HOM05D003575 ORTHO05D003587 1.9e-17 93.2 101 45.5
Phvul.007G122046 Phaseolus vulgaris HOM05D003575 ORTHO05D003587 1.9e-17 93.2 113 43.4
TAR624G0842 Trochodendron aralioides HOM05D003575 ORTHO05D003587 1.9e-17 93.2 102 45.1
RcHm_v2.0_Chr7g0213061 Rosa chinensis HOM05D003575 ORTHO05D003587 2.4e-17 92.8 100 50.0
QL04p067739 Quercus lobata HOM05D003575 ORTHO05D003587 3.2e-17 92.4 99 45.5
Lj6g0014157 Lotus japonicus HOM05D003575 ORTHO05D003587 7.1e-17 91.3 104 43.3
Nitab4.5_0009864g0030 Nicotiana tabacum HOM05D003575 ORTHO05D003587 9.3e-17 90.9 101 47.5
VMungo0647G0230 Vigna mungo HOM05D003575 ORTHO05D003587 9.3e-17 90.9 114 40.4
TAR626G1391 Trochodendron aralioides HOM05D003575 ORTHO05D003587 1.2e-16 90.5 98 43.9
Psat5g104640 Pisum sativum HOM05D003575 ORTHO05D003587 1.6e-16 90.1 104 43.3
CiPaw.04G197600 Carya illinoinensis HOM05D003575 ORTHO05D003587 3.5e-16 89.0 98 43.9
FvH4_5g23730 Fragaria vesca HOM05D003575 ORTHO05D003587 3.5e-16 89.0 115 45.2
FAN18G1810 Fragaria x ananassa HOM05D003575 ORTHO05D003587 7.9e-16 87.8 100 48.0
FAN18G2204 Fragaria x ananassa HOM05D003575 ORTHO05D003587 7.9e-16 87.8 100 48.0
PSO013G0348 Papaver somniferum HOM05D003575 ORTHO05D003587 7.9e-16 87.8 99 41.4
PSO013G0383 Papaver somniferum HOM05D003575 ORTHO05D003587 7.9e-16 87.8 99 41.4
Ciclev10015675m.g Citrus clementina HOM05D003575 ORTHO05D003587 1.7e-15 86.7 105 42.9
HanXRQChr04g0126401 Helianthus annuus HOM05D003575 ORTHO05D003587 1.7e-15 86.7 102 42.2
Medtr6g042040 Medicago truncatula HOM05D003575 ORTHO05D003587 2.3e-15 86.3 110 40.9
CANSAT21G1971 Cannabis sativa HOM05D003575 ORTHO05D003587 3.0e-15 85.9 103 39.8
Phvul.011G189400 Phaseolus vulgaris HOM05D003575 ORTHO05D003587 3.9e-15 85.5 100 47.0
AUR62014996 Chenopodium quinoa HOM05D003575 ORTHO05D003587 6.6e-15 84.7 105 40.0
PSO832G3669 Papaver somniferum HOM05D003575 ORTHO05D003587 6.6e-15 84.7 99 40.4
Prupe.3G196400 Prunus persica HOM05D003575 ORTHO05D003587 6.6e-15 84.7 97 46.4
SGA_v2.0_scaffold407G51066 Striga asiatica HOM05D003575 ORTHO05D003587 6.6e-15 84.7 100 41.0
TPR.G22472 Trifolium pratense HOM05D003575 ORTHO05D003587 8.7e-15 84.3 100 45.0
Medtr3g082720 Medicago truncatula HOM05D003575 ORTHO05D003587 1.9e-14 83.2 110 41.8
PSO339G3010 Papaver somniferum HOM05D003575 ORTHO05D003587 2.5e-14 82.8 99 40.4
PSO591G0010 Papaver somniferum HOM05D003575 ORTHO05D003587 2.5e-14 82.8 100 38.0
Aqoxy5G03850 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 7.3e-14 81.3 91 38.5
AUR62029125 Chenopodium quinoa HOM05D003575 ORTHO05D003587 7.3e-14 81.3 105 37.1
ECA236G1196 Erigeron canadensis HOM05D003366 ORTHO05D004045 7.3e-14 81.3 120 40.0
Lsat_1_v5_gn_7_97960 Lactuca sativa HOM05D003575 ORTHO05D003587 7.3e-14 81.3 101 42.6
PSO013G0119 Papaver somniferum HOM05D003575 ORTHO05D003587 7.3e-14 81.3 105 36.2
PSO832G1827 Papaver somniferum HOM05D003575 ORTHO05D003587 7.3e-14 81.3 100 39.0
RcHm_v2.0_Chr2g0133241 Rosa chinensis HOM05D003575 ORTHO05D003587 7.3e-14 81.3 127 36.2
SHI10168 Sapria himalayana HOM05D003575 ORTHO05D003587 7.3e-14 81.3 105 41.0
BraA03t14662Z Brassica rapa HOM05D003575 ORTHO05D003587 9.6e-14 80.9 98 43.9
MD09G1129100 Malus domestica HOM05D003575 ORTHO05D003587 9.6e-14 80.9 98 45.9
PSO832G1021 Papaver somniferum HOM05D003575 ORTHO05D003587 1.3e-13 80.5 105 36.2
Thhalv10027138m.g Eutrema salsugineum HOM05D003575 ORTHO05D003587 1.6e-13 80.1 138 35.5
HanXRQChr04g0126411 Helianthus annuus HOM05D003575 ORTHO05D003587 2.1e-13 79.7 102 39.2
MD17G1118100 Malus domestica HOM05D003575 ORTHO05D003587 2.1e-13 79.7 105 43.8
PSO170G1005 Papaver somniferum HOM05D003575 ORTHO05D003587 2.1e-13 79.7 99 38.4
A03p55910 Brassica napus HOM05D003575 ORTHO05D003587 2.8e-13 79.3 98 42.9
Carub.0007s1568 Capsella rubella HOM05D003575 ORTHO05D003587 2.8e-13 79.3 98 38.8
RcHm_v2.0_Chr2g0133311 Rosa chinensis HOM05D003575 ORTHO05D003587 2.8e-13 79.3 123 36.6
CDE04G2197 Ceratophyllum demersum HOM05D003575 ORTHO05D003587 3.6e-13 79.0 98 40.8
MELO3C030470.2 Cucumis melo HOM05D003575 ORTHO05D003587 3.6e-13 79.0 99 45.5
ECA236G0897 Erigeron canadensis HOM05D003575 ORTHO05D003587 3.6e-13 79.0 107 45.8
Ah.01g002520 Amaranthus hybridus HOM05D004224 ORTHO05D006437 4.8e-13 78.6 101 37.6
PSO013G0020 Papaver somniferum HOM05D003575 ORTHO05D003587 4.8e-13 78.6 105 36.2
FvH4_6g40510 Fragaria vesca HOM05D003575 ORTHO05D003587 6.2e-13 78.2 103 40.8
FAN14G2021 Fragaria x ananassa HOM05D003575 ORTHO05D003587 6.2e-13 78.2 103 40.8
Peaxi162Scf00802g00028 Petunia axillaris HOM05D003575 ORTHO05D003587 6.2e-13 78.2 81 44.4
Sp7g23350 Schrenkiella parvula HOM05D003575 ORTHO05D003587 6.2e-13 78.2 125 36.8
VMungo1127G1165 Vigna mungo HOM05D003575 ORTHO05D003587 6.2e-13 78.2 104 42.3
AT4G25330 Arabidopsis thaliana HOM05D003575 ORTHO05D003587 8.1e-13 77.8 98 37.8
C07p54200 Brassica napus HOM05D003575 ORTHO05D003587 8.1e-13 77.8 98 41.8
BolC7t45906H Brassica oleracea HOM05D003575 ORTHO05D003587 8.1e-13 77.8 98 41.8
AL7G27800 Arabidopsis lyrata HOM05D003575 ORTHO05D003587 1.4e-12 77.0 98 37.8
Hund01541 Selenicereus undatus HOM05D009102 ORTHO05D003587 1.4e-12 77.0 99 40.4
Nn1g03152 Nelumbo nucifera HOM05D003575 ORTHO05D003587 2.4e-12 76.3 92 41.3
BcaC06g32820 Brassica carinata HOM05D003575 ORTHO05D003587 4.0e-12 75.5 98 41.8
ClCG02G002950 Citrullus lanatus HOM05D003575 ORTHO05D003587 4.0e-12 75.5 99 40.4
THA.LOC104812766 Tarenaya hassleriana HOM05D003575 ORTHO05D003587 4.0e-12 75.5 99 40.4
PSO339G1364 Papaver somniferum HOM05D003575 ORTHO05D003587 5.3e-12 75.1 108 33.3
PSO339G4641 Papaver somniferum HOM05D003575 ORTHO05D003587 5.3e-12 75.1 108 33.3
Prupe.3G196500 Prunus persica HOM05D003575 ORTHO05D003587 6.9e-12 74.7 104 41.3
Manes.12G092200 Manihot esculenta HOM05D003575 ORTHO05D003587 9.0e-12 74.3 97 35.1
Aqoxy1G03433 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 1.2e-11 73.9 98 36.7
Lsat_1_v5_gn_9_62000 Lactuca sativa HOM05D000576 ORTHO05D000368 1.2e-11 73.9 101 38.6
Sed0014379 Sechium edule HOM05D003575 ORTHO05D003587 1.2e-11 73.9 98 43.9
PGSC0003DMG400017442 Solanum tuberosum HOM05D003575 ORTHO05D003587 1.5e-11 73.6 112 38.4
FvH4_3g17720 Fragaria vesca HOM05D003575 ORTHO05D003587 2.0e-11 73.2 100 40.0
RcHm_v2.0_Chr2g0155781 Rosa chinensis HOM05D003575 ORTHO05D003587 2.0e-11 73.2 97 41.2
CAN.G437.6 Capsicum annuum HOM05D003575 ORTHO05D003587 2.6e-11 72.8 100 39.0
CsaV3_3G046180 Cucumis sativus L. HOM05D003575 ORTHO05D003587 2.6e-11 72.8 104 43.3
FAN21G1295 Fragaria x ananassa HOM05D003575 ORTHO05D003587 2.6e-11 72.8 99 40.4
MBI15_g44598_MAGBIO Magnolia biondii HOM05D003575 ORTHO05D003587 2.6e-11 72.8 100 38.0
FvH4_6g40530 Fragaria vesca HOM05D003575 ORTHO05D003587 3.4e-11 72.4 98 38.8
FAN14G1012 Fragaria x ananassa HOM05D003575 ORTHO05D003587 7.6e-11 71.2 98 38.8
PSO675G6399 Papaver somniferum HOM05D003575 ORTHO05D003587 9.9e-11 70.9 100 37.0
Aqoxy5G03849 Aquilegia oxysepala HOM05D003575 ORTHO05D003587 1.3e-10 70.5 98 34.7
ATR0751G270 Amborella trichopoda HOM05D003575 ORTHO05D003587 1.7e-10 70.1 99 37.4
PSO013G0266 Papaver somniferum HOM05D003575 ORTHO05D003587 2.2e-10 69.7 100 34.0
RcHm_v2.0_Chr5g0034301 Rosa chinensis HOM05D003575 ORTHO05D003587 2.2e-10 69.7 137 33.6
FAN21G0497 Fragaria x ananassa HOM05D003575 ORTHO05D003587 2.9e-10 69.3 100 37.0
PSO541G2609 Papaver somniferum HOM05D003575 ORTHO05D003587 3.8e-10 68.9 100 37.0
FAN25G1379 Fragaria x ananassa HOM05D003575 ORTHO05D003587 4.9e-10 68.6 99 38.4
Sed0014111 Sechium edule HOM05D003575 ORTHO05D003587 4.9e-10 68.6 92 40.2
FAN11G2840 Fragaria x ananassa HOM05D003575 ORTHO05D003587 8.4e-10 67.8 98 38.8
FAN16G3603 Fragaria x ananassa HOM05D003575 ORTHO05D003587 8.4e-10 67.8 100 38.0
FvH4_3g20410 Fragaria vesca HOM05D003575 ORTHO05D003587 1.9e-09 66.6 100 36.0
FAN11G3075 Fragaria x ananassa HOM05D003575 ORTHO05D003587 1.9e-09 66.6 100 36.0
Lsat_1_v5_gn_7_97980 Lactuca sativa HOM05D000074 ORTHO05D001293 1.9e-09 66.6 100 37.0
HanXRQChr16g0520571 Helianthus annuus HOM05D003575 ORTHO05D003587 5.5e-09 65.1 102 37.3
PSO017G1253 Papaver somniferum HOM05D003575 ORTHO05D003587 2.7e-08 62.8 98 31.6
PSO017G4852 Papaver somniferum HOM05D003575 ORTHO05D003587 1.0e-07 60.8 97 37.1
SalBow6G1357 Salvia bowleyana HOM05D003575 ORTHO05D003587 3.9e-07 58.9 62 51.6
Zm00001eb287050 Zea mays HOM05D003575 ORTHO05D003587 5.6e-06 55.1 100 34.0
SEGI_27817 Sequoiadendron giganteum HOM05D003575 ORTHO05D003587 7.4e-06 54.7 101 32.7


User provided reference genes

Program Settings