Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g00810 Coffea canephora HOM05D004337 ORTHO05D005422 1.3e-98 363.2 175 100.0
Dinv09624 Davidia involucrata HOM05D004337 ORTHO05D005422 1.4e-73 280.0 169 78.7
Nitab4.5_0000496g0240 Nicotiana tabacum HOM05D004337 ORTHO05D005422 3.1e-73 278.9 171 77.8
Oeu054207.1 Olea europaea HOM05D004337 ORTHO05D005422 9.0e-73 277.3 160 81.2
Peaxi162Scf00353g00735 Petunia axillaris HOM05D004337 ORTHO05D005422 2.0e-72 276.2 163 79.1
CiPaw.15G184900 Carya illinoinensis HOM05D004337 ORTHO05D005422 2.6e-72 275.8 169 76.3
Sopen05g034740 Solanum pennellii HOM05D004337 ORTHO05D005422 2.2e-71 272.7 171 74.3
Hma1.2p1_0296F.1_g116900 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 3.8e-71 271.9 167 77.8
Solyc05g056350.3 Solanum lycopersicum HOM05D004337 ORTHO05D005422 5.0e-71 271.6 171 73.7
PGSC0003DMG400023451 Solanum tuberosum HOM05D004337 ORTHO05D005422 5.0e-71 271.6 161 77.6
Nitab4.5_0004764g0030 Nicotiana tabacum HOM05D004337 ORTHO05D005422 3.2e-70 268.9 162 80.2
Rhsim10G0124700 Rhododendron simsii HOM05D004337 ORTHO05D005422 4.2e-70 268.5 173 74.6
CAN.G1156.26 Capsicum annuum HOM05D004337 ORTHO05D005422 7.2e-70 267.7 167 75.4
Oeu017633.3 Olea europaea HOM05D004337 ORTHO05D005422 7.2e-70 267.7 159 78.0
Lj4A821G42 Lonicera japonica HOM05D004337 ORTHO05D005422 1.2e-69 266.9 170 74.7
TAR376G0777 Trochodendron aralioides HOM05D004337 ORTHO05D005422 1.6e-69 266.5 170 72.4
Glyma.06G161400 Glycine max HOM05D004337 ORTHO05D005422 2.1e-69 266.2 164 76.2
Gohir.A12G002300 Gossypium hirsutum HOM05D004337 ORTHO05D005422 2.7e-69 265.8 166 73.5
MD15G1140200 Malus domestica HOM05D004337 ORTHO05D005422 4.6e-69 265.0 169 74.0
Potri.T045800 Populus trichocarpa HOM05D004337 ORTHO05D005422 4.6e-69 265.0 169 72.8
Cfa020919 Carpinus fangiana HOM05D004337 ORTHO05D005422 6.1e-69 264.6 169 71.6
Prupe.4G286100 Prunus persica HOM05D004337 ORTHO05D005422 6.1e-69 264.6 163 76.7
Actinidia36582 Actinidia chinensis HOM05D004337 ORTHO05D005422 7.9e-69 264.2 166 75.3
Gorai.008G001400 Gossypium raimondii HOM05D004337 ORTHO05D005422 1.0e-68 263.8 166 72.9
Haze_19352 Corylus avellana HOM05D004337 ORTHO05D005422 1.3e-68 263.5 169 71.6
Duzib264G1201 Durio zibethinus HOM05D004337 ORTHO05D005422 1.3e-68 263.5 166 74.1
Glyma.04G203800 Glycine max HOM05D004337 ORTHO05D005422 1.3e-68 263.5 164 75.6
Lsat_1_v5_gn_2_40441 Lactuca sativa HOM05D004337 ORTHO05D005422 1.3e-68 263.5 172 73.8
Potri.018G137500 Populus trichocarpa HOM05D004337 ORTHO05D005422 1.3e-68 263.5 169 72.2
ECA238G0122 Erigeron canadensis HOM05D004337 ORTHO05D005422 2.3e-68 262.7 169 75.1
Thecc.01G146600 Theobroma cacao HOM05D004337 ORTHO05D005422 2.3e-68 262.7 166 74.7
VMungo1309G0234 Vigna mungo HOM05D004337 ORTHO05D005422 2.3e-68 262.7 164 75.6
GSVIVG01000243001 Vitis vinifera HOM05D004337 ORTHO05D005422 2.3e-68 262.7 160 76.9
Peaxi162Scf00651g00114 Petunia axillaris HOM05D004337 ORTHO05D005422 3.0e-68 262.3 165 74.5
SGA_v2.0_scaffold12G06278 Striga asiatica HOM05D004337 ORTHO05D005422 3.9e-68 261.9 164 77.4
Gohir.A05G375100 Gossypium hirsutum HOM05D004337 ORTHO05D005422 5.1e-68 261.5 165 72.7
Gohir.D04G040600 Gossypium hirsutum HOM05D004337 ORTHO05D005422 5.1e-68 261.5 165 72.7
Gorai.012G045800 Gossypium raimondii HOM05D004337 ORTHO05D005422 5.1e-68 261.5 165 72.7
Potri.004G134500 Populus trichocarpa HOM05D004337 ORTHO05D005422 5.1e-68 261.5 169 71.6
Sabra04G0083600 Salix brachista HOM05D004337 ORTHO05D005422 5.1e-68 261.5 169 71.6
arahy.Tifrunner.gnm1.ann1.X1BSDH Arachis hypogaea HOM05D004337 ORTHO05D005422 1.9e-67 259.6 164 74.4
Aqoxy5G01850 Aquilegia oxysepala HOM05D004337 ORTHO05D005422 2.5e-67 259.2 166 73.5
Cpa.g.sc138.38 Carica papaya HOM05D004337 ORTHO05D005422 2.5e-67 259.2 169 71.0
DCAR_009619 Daucus carota HOM05D004337 ORTHO05D005422 2.5e-67 259.2 167 73.7
Nn5g27210 Nelumbo nucifera HOM05D004337 ORTHO05D005422 2.5e-67 259.2 163 74.8
Gohir.D12G002000 Gossypium hirsutum HOM05D004337 ORTHO05D005422 3.3e-67 258.8 166 71.1
QL10p037473 Quercus lobata HOM05D004337 ORTHO05D005422 4.3e-67 258.5 169 71.6
MBI06_g32147_MAGBIO Magnolia biondii HOM05D004337 ORTHO05D005422 5.7e-67 258.1 170 69.4
Manes.12G081000 Manihot esculenta HOM05D004337 ORTHO05D005422 5.7e-67 258.1 172 69.2
Lj1g0000957 Lotus japonicus HOM05D004337 ORTHO05D005422 7.4e-67 257.7 164 75.0
MSTRG.23236 Avicennia marina HOM05D004337 ORTHO05D005422 9.7e-67 257.3 158 77.8
A06p34530 Brassica napus HOM05D004337 ORTHO05D005422 2.2e-66 256.1 171 69.6
Phvul.009G159800 Phaseolus vulgaris HOM05D004337 ORTHO05D005422 2.2e-66 256.1 164 73.8
Thhalv10013045m.g Eutrema salsugineum HOM05D004337 ORTHO05D005422 2.8e-66 255.8 169 73.4
arahy.Tifrunner.gnm1.ann1.397MFZ Arachis hypogaea HOM05D004337 ORTHO05D005422 3.7e-66 255.4 164 73.2
Actinidia19947 Actinidia chinensis HOM05D004337 ORTHO05D005422 4.8e-66 255.0 154 77.9
Oeu046358.1 Olea europaea HOM05D004337 ORTHO05D005422 4.8e-66 255.0 170 72.4
AL6G18970 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 6.3e-66 254.6 170 70.0
Sp2g23620 Schrenkiella parvula HOM05D004337 ORTHO05D005422 6.3e-66 254.6 170 68.8
BolC7t44925H Brassica oleracea HOM05D004337 ORTHO05D005422 8.2e-66 254.2 171 69.0
BraA06t26382Z Brassica rapa HOM05D004337 ORTHO05D005422 8.2e-66 254.2 171 69.0
C07p43970 Brassica napus HOM05D004337 ORTHO05D005422 1.1e-65 253.8 171 69.0
AL6G19170 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 1.8e-65 253.1 170 69.4
BolC9t59595H Brassica oleracea HOM05D004337 ORTHO05D005422 3.1e-65 252.3 174 70.7
Ca_17042_v3 Cicer arietinum L. HOM05D004337 ORTHO05D005422 3.1e-65 252.3 159 74.8
SGA_v2.0_scaffold51G18842 Striga asiatica HOM05D004337 ORTHO05D005422 3.1e-65 252.3 158 78.5
MELO3C003282.2 Cucumis melo HOM05D004337 ORTHO05D005422 4.1e-65 251.9 163 72.4
SalBow8G1257 Salvia bowleyana HOM05D004337 ORTHO05D005422 4.1e-65 251.9 159 75.5
SalBow8G3722 Salvia bowleyana HOM05D004337 ORTHO05D005422 4.1e-65 251.9 159 75.5
Aa31LG3G18040 Aethionema arabicum HOM05D004337 ORTHO05D005422 5.3e-65 251.5 170 70.6
BcaB08g37252 Brassica carinata HOM05D004337 ORTHO05D005422 6.9e-65 251.1 162 75.9
C09p68510 Brassica napus HOM05D004337 ORTHO05D005422 9.1e-65 250.8 169 71.6
Ciclev10025224m.g Citrus clementina HOM05D004337 ORTHO05D005422 1.2e-64 250.4 169 67.5
CANSAT54G2432 Cannabis sativa HOM05D004337 ORTHO05D005422 1.5e-64 250.0 166 69.9
BraA10t44874Z Brassica rapa HOM05D004337 ORTHO05D005422 2.0e-64 249.6 169 72.8
BcaB04g19858 Brassica carinata HOM05D004337 ORTHO05D005422 2.6e-64 249.2 171 67.3
A09p06870 Brassica napus HOM05D004337 ORTHO05D005422 3.4e-64 248.8 171 66.7
Sed0025757 Sechium edule HOM05D004337 ORTHO05D005422 3.4e-64 248.8 163 71.8
BcaC04g23504 Brassica carinata HOM05D004337 ORTHO05D005422 4.5e-64 248.4 171 66.7
BolC9t53677H Brassica oleracea HOM05D004337 ORTHO05D005422 4.5e-64 248.4 171 66.7
A10p28250 Brassica napus HOM05D004337 ORTHO05D005422 5.9e-64 248.1 169 72.2
Carub.0006s0742 Capsella rubella HOM05D004337 ORTHO05D005422 5.9e-64 248.1 170 68.8
AL6G34865 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 7.7e-64 247.7 171 66.1
AT5G23575 Arabidopsis thaliana HOM05D004337 ORTHO05D005422 7.7e-64 247.7 171 66.1
ClCG04G002680 Citrullus lanatus HOM05D004337 ORTHO05D005422 7.7e-64 247.7 163 71.2
CARHR204490 Cardamine hirsuta HOM05D004337 ORTHO05D005422 1.0e-63 247.3 170 68.2
TPR.G7800 Trifolium pratense HOM05D004337 ORTHO05D005422 1.3e-63 246.9 169 68.6
RcHm_v2.0_Chr3g0484771 Rosa chinensis HOM05D004337 ORTHO05D005422 1.7e-63 246.5 160 72.5
Carub.0006s2135 Capsella rubella HOM05D004337 ORTHO05D005422 2.2e-63 246.1 171 66.1
Thhalv10003872m.g Eutrema salsugineum HOM05D004337 ORTHO05D005422 2.2e-63 246.1 170 66.5
THA.LOC104819366 Tarenaya hassleriana HOM05D004337 ORTHO05D005422 2.9e-63 245.7 169 68.6
ATR1089G072 Amborella trichopoda HOM05D004337 ORTHO05D005422 3.8e-63 245.4 168 67.9
CsaV3_4G030000 Cucumis sativus L. HOM05D004337 ORTHO05D005422 3.8e-63 245.4 163 70.6
BraA09t36334Z Brassica rapa HOM05D004337 ORTHO05D005422 6.5e-63 244.6 171 66.1
unitig_736.g22365 Utricularia gibba HOM05D004337 ORTHO05D005422 8.5e-63 244.2 166 71.7
THA.LOC104818397 Tarenaya hassleriana HOM05D004337 ORTHO05D005422 1.1e-62 243.8 159 73.0
C09p07600 Brassica napus HOM05D004337 ORTHO05D005422 1.4e-62 243.4 171 64.9
TWI75G1462 Tripterygium wilfordii HOM05D004337 ORTHO05D005422 1.4e-62 243.4 169 66.3
FAN28G1720 Fragaria x ananassa HOM05D004337 ORTHO05D005422 1.9e-62 243.0 161 72.7
FAN23G1824 Fragaria x ananassa HOM05D004337 ORTHO05D005422 3.2e-62 242.3 161 72.7
Lalb_Chr07g0183961 Lupinus albus HOM05D004337 ORTHO05D005422 3.2e-62 242.3 161 71.4
Aa31LG11G2980 Aethionema arabicum HOM05D004337 ORTHO05D005422 4.2e-62 241.9 165 69.1
FAN19G0301 Fragaria x ananassa HOM05D004337 ORTHO05D005422 4.2e-62 241.9 161 72.7
PGR119G0424 Punica granatum HOM05D004337 ORTHO05D005422 5.5e-62 241.5 164 69.5
Hund21761 Selenicereus undatus HOM05D004337 ORTHO05D005422 7.2e-62 241.1 168 66.1
EL10Ac4g09743 Beta vulgaris HOM05D004337 ORTHO05D005422 9.4e-62 240.7 169 68.0
Psat5g057120 Pisum sativum HOM05D004337 ORTHO05D005422 1.2e-61 240.4 169 67.5
Zm00001eb082160 Zea mays HOM05D004337 ORTHO05D005422 2.7e-61 239.2 160 67.5
Zm00001eb422980 Zea mays HOM05D004337 ORTHO05D005422 2.7e-61 239.2 160 66.9
Atru.chr3.1466 Acer truncatum HOM05D004337 ORTHO05D005422 3.6e-61 238.8 172 67.4
CARHR189960 Cardamine hirsuta HOM05D004337 ORTHO05D005422 3.6e-61 238.8 171 64.9
AUR62006971 Chenopodium quinoa HOM05D004337 ORTHO05D005422 7.9e-61 237.7 169 66.9
FvH4_1g25770 Fragaria vesca HOM05D004337 ORTHO05D005422 7.9e-61 237.7 161 70.8
HPP92_009218 Vanilla planifolia HOM05D004337 ORTHO05D005422 1.0e-60 237.3 161 70.8
Lalb_Chr12g0202711 Lupinus albus HOM05D004337 ORTHO05D005422 1.4e-60 236.9 161 70.2
Medtr3g098210 Medicago truncatula HOM05D004337 ORTHO05D005422 1.8e-60 236.5 164 69.5
FAN26G1467 Fragaria x ananassa HOM05D004337 ORTHO05D005422 2.3e-60 236.1 161 70.8
Eucgr.I00018 Eucalyptus grandis HOM05D004337 ORTHO05D005422 3.0e-60 235.7 160 71.9
AUR62000615 Chenopodium quinoa HOM05D004337 ORTHO05D005422 3.9e-60 235.3 169 65.7
Migut.H02542 Erythranthe guttata HOM05D004337 ORTHO05D005422 8.8e-60 234.2 160 70.0
Os04g0441900 Oryza sativa ssp. japonica HOM05D004337 ORTHO05D005422 1.1e-59 233.8 160 67.5
Sc16g0009860 Simmondsia chinensis HOM05D004337 ORTHO05D005422 3.3e-59 232.3 169 65.7
COL.COLO4_33529 Corchorus olitorius HOM05D004337 ORTHO05D005422 1.3e-58 230.3 161 66.5
vmacro12739 Vaccinium macrocarpon HOM05D004337 ORTHO05D005422 4.8e-58 228.4 248 50.4
CDE05G2996 Ceratophyllum demersum HOM05D004337 ORTHO05D005422 1.8e-57 226.5 158 62.7
HanXRQChr10g0285831 Helianthus annuus HOM05D004337 ORTHO05D005422 1.8e-57 226.5 145 72.4
PSO210G2848 Papaver somniferum HOM05D004337 ORTHO05D005422 5.9e-56 221.5 177 61.0
PSO761G0180 Papaver somniferum HOM05D004337 ORTHO05D005422 7.7e-56 221.1 158 65.8
Dinv10851 Davidia involucrata HOM05D004337 ORTHO05D005422 2.2e-50 203.0 120 78.3
Sp6g34400 Schrenkiella parvula HOM05D004337 ORTHO05D005422 4.2e-46 188.7 168 58.3
Mapoly0020s0073 Marchantia polymorpha HOM05D004337 ORTHO05D005422 8.0e-45 184.5 169 50.9
AT5G08500 Arabidopsis thaliana HOM05D004337 ORTHO05D005422 1.0e-44 184.1 120 70.8
SMO116G0204 Selaginella moellendorffii HOM05D004337 ORTHO05D005422 5.7e-43 178.3 147 56.5
CBR_g44530 Chara braunii HOM05D004337 ORTHO05D005422 1.7e-42 176.8 146 55.5
CSS0021638 Camellia sinensis var. sinensis HOM05D004337 ORTHO05D005422 1.1e-33 147.5 82 82.9
Ah.06g188230 Amaranthus hybridus HOM05D004337 ORTHO05D005422 7.2e-30 134.8 169 46.2
Pp3c5_10010 Physcomitrium patens HOM05D004337 ORTHO05D005422 7.5e-27 124.8 165 39.4
BcaC04g21668 Brassica carinata HOM05D004337 ORTHO05D021976 2.8e-26 122.9 73 75.3
C09p29160 Brassica napus HOM05D004337 ORTHO05D021976 2.8e-26 122.9 73 75.3
Psat3g077400 Pisum sativum HOM05D004337 ORTHO05D005422 6.1e-21 105.1 81 61.7
Cre09.g397900 Chlamydomonas reinhardtii HOM05D004337 ORTHO05D005422 5.9e-16 88.6 174 31.0
AUR62044487 Chenopodium quinoa HOM05D004337 ORTHO05D021976 4.3e-14 82.4 49 71.4
AUR62044516 Chenopodium quinoa HOM05D004337 ORTHO05D021976 4.3e-14 82.4 49 71.4
SHI11402 Sapria himalayana HOM05D000039 ORTHO05D006865 3.6e-13 79.3 48 68.8
AUR62038356 Chenopodium quinoa HOM05D001477 ORTHO05D021976 8.9e-12 74.7 43 74.4
CDE05G0837 Ceratophyllum demersum HOM05D004337 ORTHO05D043897 3.2e-09 66.2 46 60.9


User provided reference genes

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