Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g00450 Coffea canephora HOM05D004385 ORTHO05D005245 0.0e+00 1204.9 601 100.0
Cc00_g00420 Coffea canephora HOM05D004385 ORTHO05D005245 2.4e-302 1041.6 599 88.3
Oeu028831.1 Olea europaea HOM05D004385 ORTHO05D005245 1.2e-208 730.3 582 62.4
Dinv26468 Davidia involucrata HOM05D004385 ORTHO05D005245 9.3e-198 694.1 583 60.7
MSTRG.10464 Avicennia marina HOM05D004385 ORTHO05D005245 2.1e-197 693.0 567 63.0
Sopen07g005830 Solanum pennellii HOM05D004385 ORTHO05D005245 3.0e-196 689.1 526 65.0
Potri.018G138206 Populus trichocarpa HOM05D004385 ORTHO05D005245 8.7e-196 687.6 520 65.4
Thecc.09G194100 Theobroma cacao HOM05D004385 ORTHO05D005245 2.6e-192 676.0 522 64.9
Haze_19053 Corylus avellana HOM05D004385 ORTHO05D005245 3.4e-192 675.6 529 63.7
TWI32G0217 Tripterygium wilfordii HOM05D004385 ORTHO05D005245 5.0e-191 671.8 523 63.9
Manes.03G078300 Manihot esculenta HOM05D004385 ORTHO05D005245 9.4e-190 667.5 522 64.0
TAR626G1834 Trochodendron aralioides HOM05D004385 ORTHO05D005245 1.6e-189 666.8 485 67.2
Hma1.2p1_0284F.1_g113840 Hydrangea macrophylla HOM05D004385 ORTHO05D005245 3.6e-189 665.6 491 66.8
Ca_20811_v3 Cicer arietinum L. HOM05D004385 ORTHO05D005245 7.9e-189 664.5 513 64.5
Glyma.12G049000 Glycine max HOM05D004385 ORTHO05D005245 8.8e-188 661.0 514 64.2
QL11p009243 Quercus lobata HOM05D004385 ORTHO05D005245 8.8e-188 661.0 505 64.2
vmacro22292 Vaccinium macrocarpon HOM05D004385 ORTHO05D005245 8.8e-188 661.0 499 64.9
Medtr4g068230 Medicago truncatula HOM05D004385 ORTHO05D005245 2.0e-187 659.8 514 64.0
Prupe.1G065500 Prunus persica HOM05D004385 ORTHO05D005245 2.6e-187 659.4 605 55.0
FvH4_4g06230 Fragaria vesca HOM05D004385 ORTHO05D005245 5.7e-187 658.3 483 65.0
RcHm_v2.0_Chr4g0397951 Rosa chinensis HOM05D004385 ORTHO05D005245 1.3e-186 657.1 517 61.7
Medtr4g068240 Medicago truncatula HOM05D004385 ORTHO05D005245 2.2e-186 656.4 517 63.1
Psat0s5298g0040 Pisum sativum HOM05D004385 ORTHO05D005245 2.8e-186 656.0 511 63.4
Haze_19054 Corylus avellana HOM05D004385 ORTHO05D005245 3.7e-186 655.6 545 60.6
Medtr4g068270 Medicago truncatula HOM05D004385 ORTHO05D005245 3.7e-186 655.6 495 64.6
Lj3g0012868 Lotus japonicus HOM05D004385 ORTHO05D005245 4.8e-186 655.2 506 64.0
TPR.G34256 Trifolium pratense HOM05D004385 ORTHO05D005245 6.3e-186 654.8 516 63.4
CANSAT80G1931 Cannabis sativa HOM05D004385 ORTHO05D005245 1.1e-185 654.1 489 64.2
Rhsim05G0069600 Rhododendron simsii HOM05D004385 ORTHO05D005245 2.4e-185 652.9 499 64.5
Cpa.g.sc123.33 Carica papaya HOM05D004385 ORTHO05D005245 4.1e-185 652.1 518 62.0
Gohir.D05G001400 Gossypium hirsutum HOM05D004385 ORTHO05D005245 6.9e-185 651.4 497 65.4
Gorai.009G001300 Gossypium raimondii HOM05D004385 ORTHO05D005245 9.1e-185 651.0 497 65.4
Gohir.A05G001100 Gossypium hirsutum HOM05D004385 ORTHO05D005245 2.0e-184 649.8 497 65.4
VMungo1127G2221 Vigna mungo HOM05D004385 ORTHO05D005245 2.0e-184 649.8 519 62.6
FAN12G0289 Fragaria x ananassa HOM05D004385 ORTHO05D005245 3.4e-184 649.0 511 61.6
MD16G1239400 Malus domestica HOM05D004385 ORTHO05D005245 3.4e-184 649.0 584 57.2
arahy.Tifrunner.gnm1.ann1.D17V0C Arachis hypogaea HOM05D004385 ORTHO05D005245 7.7e-184 647.9 495 64.6
DCAR_023663 Daucus carota HOM05D004385 ORTHO05D005245 1.3e-183 647.1 494 64.8
CSS0002376 Camellia sinensis var. sinensis HOM05D004385 ORTHO05D005245 1.7e-183 646.7 530 62.1
COL.COLO4_24913 Corchorus olitorius HOM05D004385 ORTHO05D005245 1.7e-183 646.7 495 64.4
EL10Ac2g03630 Beta vulgaris HOM05D004385 ORTHO05D005245 8.5e-183 644.4 531 61.2
CANSAT80G0643 Cannabis sativa HOM05D004385 ORTHO05D005245 8.5e-183 644.4 517 60.0
arahy.Tifrunner.gnm1.ann1.77JVZB Arachis hypogaea HOM05D004385 ORTHO05D005245 1.4e-182 643.7 495 64.2
ECA240G2514 Erigeron canadensis HOM05D004385 ORTHO05D005245 1.4e-182 643.7 505 63.2
Nitab4.5_0000413g0040 Nicotiana tabacum HOM05D004385 ORTHO05D005245 1.9e-182 643.3 524 63.7
Migut.B00849 Erythranthe guttata HOM05D004385 ORTHO05D005245 7.2e-182 641.3 475 67.2
Peaxi162Scf00320g00412 Petunia axillaris HOM05D004385 ORTHO05D005245 7.2e-182 641.3 486 66.9
HanXRQChr03g0067331 Helianthus annuus HOM05D004385 ORTHO05D005245 1.6e-181 640.2 496 62.5
Manes.03G078400 Manihot esculenta HOM05D004385 ORTHO05D005245 1.6e-181 640.2 487 64.5
Phvul.011G051400 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 2.7e-181 639.4 521 62.8
AUR62028001 Chenopodium quinoa HOM05D004385 ORTHO05D005245 3.6e-181 639.0 486 64.2
Nitab4.5_0001205g0010 Nicotiana tabacum HOM05D004385 ORTHO05D005245 3.6e-181 639.0 491 66.6
Lalb_Chr19g0138471 Lupinus albus HOM05D004385 ORTHO05D005245 5.7e-179 631.7 518 61.2
ClCG06G014050 Citrullus lanatus HOM05D004385 ORTHO05D005245 9.7e-179 630.9 486 63.0
CsaV3_2G035400 Cucumis sativus L. HOM05D004385 ORTHO05D005245 9.7e-179 630.9 495 61.8
Eucgr.C02022 Eucalyptus grandis HOM05D004385 ORTHO05D005245 3.7e-178 629.0 482 63.5
SGA_v2.0_scaffold21G09624 Striga asiatica HOM05D004385 ORTHO05D005245 8.2e-178 627.9 483 66.0
Sed0013454 Sechium edule HOM05D004385 ORTHO05D005245 1.8e-177 626.7 486 62.6
Cpa.g.sc123.32 Carica papaya HOM05D004385 ORTHO05D005245 3.1e-177 625.9 537 58.5
Duzib168G1467 Durio zibethinus HOM05D004385 ORTHO05D005245 1.2e-176 624.0 471 64.3
Sed0010902 Sechium edule HOM05D004385 ORTHO05D005245 2.0e-176 623.2 487 61.8
Atru.chr7.972_Atru.chr7.973 Acer truncatum HOM05D004385 ORTHO05D005245 3.5e-176 622.5 532 60.2
MELO3C019214.2 Cucumis melo HOM05D004385 ORTHO05D005245 4.5e-176 622.1 628 51.0
PGR142G0778 Punica granatum HOM05D004385 ORTHO05D005245 4.5e-176 622.1 498 60.8
Lsat_1_v5_gn_7_57600 Lactuca sativa HOM05D004385 ORTHO05D005245 1.3e-175 620.5 492 63.2
Nn1g09800 Nelumbo nucifera HOM05D004385 ORTHO05D005245 3.8e-175 619.0 485 63.3
Solyc07g015980.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 6.5e-175 618.2 493 63.3
CiPaw.15G156000 Carya illinoinensis HOM05D004385 ORTHO05D005245 1.1e-174 617.5 495 63.6
ClCG06G014070 Citrullus lanatus HOM05D004385 ORTHO05D005245 1.9e-174 616.7 502 60.0
Psat0s8631g0040 Pisum sativum HOM05D004385 ORTHO05D005245 2.1e-173 613.2 517 60.2
Phvul.011G051300 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 6.1e-173 611.7 489 63.0
MBI11_g07424_MAGBIO Magnolia biondii HOM05D004385 ORTHO05D005245 1.7e-170 603.6 492 61.0
Sed0010048 Sechium edule HOM05D004385 ORTHO05D005245 6.3e-170 601.7 542 56.3
Phvul.011G051100 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 2.4e-169 599.7 489 62.6
Sed0018057 Sechium edule HOM05D004385 ORTHO05D005245 2.4e-169 599.7 528 56.6
Sabra18G0119900 Salix brachista HOM05D004385 ORTHO05D005245 7.0e-169 598.2 537 57.7
TPR.G10229 Trifolium pratense HOM05D004385 ORTHO05D005245 1.6e-168 597.0 582 54.0
VMungo1127G1209 Vigna mungo HOM05D004385 ORTHO05D005245 3.5e-168 595.9 484 61.4
HPP92_003174 Vanilla planifolia HOM05D004385 ORTHO05D005245 2.2e-167 593.2 512 59.2
Peaxi162Scf00320g00411 Petunia axillaris HOM05D004385 ORTHO05D005245 5.2e-164 582.0 494 56.5
ECA240G4307 Erigeron canadensis HOM05D004385 ORTHO05D005245 8.8e-164 581.3 508 57.3
HanXRQChr03g0067221 Helianthus annuus HOM05D004385 ORTHO05D005245 2.6e-163 579.7 489 58.9
Hund03234 Selenicereus undatus HOM05D004385 ORTHO05D005245 5.4e-161 572.0 493 58.8
ATR1147G022 Amborella trichopoda HOM05D004385 ORTHO05D005245 4.5e-160 568.9 506 57.9
EL10Ac2g03633 Beta vulgaris HOM05D004385 ORTHO05D005245 7.7e-160 568.2 527 56.0
Potri.018G145600 Populus trichocarpa HOM05D004385 ORTHO05D005245 1.3e-159 567.4 420 66.2
AUR62028006 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.9e-158 563.5 524 56.1
AUR62020716 Chenopodium quinoa HOM05D004385 ORTHO05D005245 7.2e-158 561.6 524 56.1
Migut.L01912 Erythranthe guttata HOM05D004385 ORTHO05D005245 2.8e-157 559.7 474 60.8
HanXRQChr03g0067391 Helianthus annuus HOM05D004385 ORTHO05D005245 1.2e-155 554.3 484 56.8
EL10Ac2g03634 Beta vulgaris HOM05D004385 ORTHO05D005245 1.5e-155 553.9 477 58.7
SEGI_12293 Sequoiadendron giganteum HOM05D004385 ORTHO05D005245 4.1e-153 545.8 493 55.4
AUR62028000 Chenopodium quinoa HOM05D004385 ORTHO05D005245 9.2e-153 544.7 498 57.8
RhsimUnG0051500 Rhododendron simsii HOM05D004385 ORTHO05D005245 2.7e-152 543.1 513 55.9
EL10Ac2g03631 Beta vulgaris HOM05D004385 ORTHO05D005245 5.9e-152 542.0 488 57.2
Peaxi162Scf00320g00316 Petunia axillaris HOM05D004385 ORTHO05D005245 1.1e-150 537.7 489 54.4
AUR62027997 Chenopodium quinoa HOM05D004385 ORTHO05D005245 3.5e-144 516.2 497 54.7
EL10Ac2g03632 Beta vulgaris HOM05D004385 ORTHO05D005245 5.9e-144 515.4 528 53.4
Ah.11g043630 Amaranthus hybridus HOM05D004385 ORTHO05D005245 1.0e-143 514.6 500 54.8
Peaxi162Scf00320g00317 Petunia axillaris HOM05D004385 ORTHO05D005245 3.9e-143 512.7 494 52.2
Cpa.g.sc123.30 Carica papaya HOM05D004385 ORTHO05D005245 1.4e-140 504.2 519 52.2
Rhsim01G0218300 Rhododendron simsii HOM05D004385 ORTHO05D005245 8.9e-140 501.5 464 56.7
CDE06G1948 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 3.4e-139 499.6 454 56.4
EL10Ac2g04868 Beta vulgaris HOM05D004385 ORTHO05D005245 7.0e-137 491.9 491 54.4
Mapoly0055s0075 Marchantia polymorpha HOM05D004385 ORTHO05D005245 9.2e-137 491.5 501 51.3
Ah.11g043620 Amaranthus hybridus HOM05D004385 ORTHO05D005245 3.5e-136 489.6 478 54.4
EL10Ac2g04866 Beta vulgaris HOM05D004385 ORTHO05D005245 2.3e-135 486.9 486 53.3
SGA_v2.0_scaffold21G09621 Striga asiatica HOM05D004385 ORTHO05D005245 6.6e-135 485.3 453 54.3
AagrBONN_evm.TU.Sc2ySwM_117.1864 Anthoceros agrestis HOM05D004385 ORTHO05D005245 9.5e-134 481.5 533 47.7
Atru.chr9.1512 Acer truncatum HOM05D004385 ORTHO05D005245 1.8e-132 477.2 519 52.6
Sc06g0001470 Simmondsia chinensis HOM05D004385 ORTHO05D005245 6.8e-132 475.3 394 57.9
Rhsim03G0268600 Rhododendron simsii HOM05D004385 ORTHO05D005245 8.9e-132 474.9 504 51.6
Cpa.g.sc123.31 Carica papaya HOM05D004385 ORTHO05D005245 3.4e-131 473.0 453 54.1
Zm00001eb064440 Zea mays HOM05D004385 ORTHO05D005245 5.4e-129 465.7 395 58.5
Pp3c15_21680 Physcomitrium patens HOM05D004385 ORTHO05D005245 2.1e-128 463.8 494 49.2
PGSC0003DMG400021019 Solanum tuberosum HOM05D004385 ORTHO05D005245 5.1e-127 459.1 342 67.3
unitig_578.g16395 Utricularia gibba HOM05D004385 ORTHO05D005245 3.0e-119 433.3 334 65.0
CAN.G1581.3 Capsicum annuum HOM05D004385 ORTHO05D005245 8.7e-119 431.8 330 65.5
Cfa020737 Carpinus fangiana HOM05D004385 ORTHO05D005245 1.3e-114 417.9 328 62.8
PGSC0003DMG400022081 Solanum tuberosum HOM05D004385 ORTHO05D005245 1.3e-114 417.9 456 48.5
TPR.G34194 Trifolium pratense HOM05D004385 ORTHO05D005245 6.4e-114 415.6 323 63.5
TAR626G1477 Trochodendron aralioides HOM05D004385 ORTHO05D005245 3.0e-111 406.8 288 68.4
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 2.4e-108 397.1 631 38.4
Haze_18802 Corylus avellana HOM05D004385 ORTHO05D005245 5.8e-107 392.5 394 54.3
FAN17G2530 Fragaria x ananassa HOM05D004385 ORTHO05D005245 1.1e-105 388.3 340 57.6
Solyc07g016050.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.3e-103 381.3 338 54.7
Atru.chr9.1488 Acer truncatum HOM05D004385 ORTHO05D005245 3.5e-96 356.7 414 49.5
Aqoxy2G04068 Aquilegia oxysepala HOM05D004385 ORTHO05D005245 4.6e-96 356.3 439 45.3
CsaV3_1G004600 Cucumis sativus L. HOM05D004385 ORTHO05D005245 1.5e-94 351.3 237 69.2
Migut.L00572 Erythranthe guttata HOM05D004385 ORTHO05D005245 1.0e-82 312.0 227 63.0
Solyc07g016080.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 5.0e-82 309.7 276 55.1
CDE06G1657 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 1.9e-78 297.7 451 41.2
Migut.L00391 Erythranthe guttata HOM05D004385 ORTHO05D005245 9.7e-78 295.4 229 59.0
Cre02.g105150 Chlamydomonas reinhardtii HOM05D004385 ORTHO05D005245 7.7e-75 285.8 600 32.8
Solyc07g016030.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 9.7e-70 268.9 345 43.2
PRCOL_00000420 Prasinoderma coloniale HOM05D004385 ORTHO05D005245 2.9e-66 257.3 484 36.4
SalBow5G2207 Salvia bowleyana HOM05D004385 ORTHO05D005245 2.9e-66 257.3 183 68.3
EL10Ac6g13794 Beta vulgaris HOM05D004385 ORTHO05D005245 2.1e-64 251.1 272 52.6
CAN.G1581.2 Capsicum annuum HOM05D004385 ORTHO05D005245 1.8e-63 248.1 156 75.0
Psat1g029120 Pisum sativum HOM05D000870 ORTHO05D000715 2.0e-62 244.6 185 64.3
Sopen07g016620 Solanum pennellii HOM05D004385 ORTHO05D005245 1.6e-59 235.0 146 76.0
MELO3C017386.2 Cucumis melo HOM05D004385 ORTHO05D005245 2.6e-59 234.2 181 61.9
FAN07G2444 Fragaria x ananassa HOM05D004385 ORTHO05D005245 5.9e-59 233.0 147 72.1
FAN22G1494 Fragaria x ananassa HOM05D004385 ORTHO05D005245 5.9e-59 233.0 147 72.1
unitig_578.g16396 Utricularia gibba HOM05D004385 ORTHO05D005245 2.0e-51 208.0 136 74.3
AUR62020718 Chenopodium quinoa HOM05D004385 ORTHO05D005245 5.9e-51 206.5 196 50.5
Sopen00g013700 Solanum pennellii HOM05D004385 ORTHO05D005245 1.1e-49 202.2 147 62.6
Sopen07g016630 Solanum pennellii HOM05D004385 ORTHO05D005245 4.5e-43 180.3 189 51.9
Solyc07g016020.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 7.7e-43 179.5 149 57.0
AUR62028004 Chenopodium quinoa HOM05D004385 ORTHO05D005245 3.3e-41 174.1 130 63.1
AUR62020720 Chenopodium quinoa HOM05D004385 ORTHO05D005245 4.0e-39 167.2 171 50.9
Solyc07g016040.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 7.5e-38 162.9 117 63.2
AUR62028003 Chenopodium quinoa HOM05D004385 ORTHO05D005245 4.9e-37 160.2 198 47.0
Psat0s3373g0120 Pisum sativum HOM05D000870 ORTHO05D005245 2.3e-34 151.4 185 46.5
Solyc07g032590.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 3.8e-34 150.6 140 57.1
AUR62020721 Chenopodium quinoa HOM05D004385 ORTHO05D005245 5.0e-34 150.2 109 62.4
PGSC0003DMG400007349 Solanum tuberosum HOM05D004385 ORTHO05D005245 1.4e-23 115.5 76 67.1
AUR62027998 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.2e-19 102.4 87 52.9
GSVIVG01026776001 Vitis vinifera HOM05D004385 ORTHO05D005245 2.3e-15 88.2 67 58.2
Medtr5g096240 Medicago truncatula HOM05D004385 ORTHO05D005245 1.1e-09 69.3 73 46.6
Oeu000968.1 Olea europaea HOM05D004385 ORTHO05D005245 7.3e-09 66.6 63 54.0
Medtr4g117010 Medicago truncatula HOM05D004385 ORTHO05D005245 2.8e-08 64.7 73 46.6


User provided reference genes

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