Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g00410 Coffea canephora HOM05D004301 ORTHO05D005124 1.4e-76 289.7 160 100.0
Cc03_g13960 Coffea canephora HOM05D004301 ORTHO05D005124 1.8e-63 246.1 141 95.7
Duzib235G0809 Durio zibethinus HOM05D004301 ORTHO05D005124 1.5e-57 226.5 143 87.4
Lj1A1229G41 Lonicera japonica HOM05D004301 ORTHO05D005124 1.5e-57 226.5 141 87.9
Ciclev10017125m.g Citrus clementina HOM05D004301 ORTHO05D005124 2.5e-57 225.7 141 87.2
CSS0040354 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 1.2e-56 223.4 141 87.2
Nitab4.5_0007007g0030 Nicotiana tabacum HOM05D004301 ORTHO05D005124 1.6e-56 223.0 141 87.2
CSS0003131 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 2.8e-56 222.2 141 86.5
Dinv18010 Davidia involucrata HOM05D004301 ORTHO05D005124 3.6e-56 221.9 141 86.5
Peaxi162Scf00595g00039 Petunia axillaris HOM05D004301 ORTHO05D005124 3.6e-56 221.9 143 86.7
Nitab4.5_0007482g0040 Nicotiana tabacum HOM05D004301 ORTHO05D005124 4.7e-56 221.5 141 86.5
Cpa.g.sc198.42 Carica papaya HOM05D004301 ORTHO05D005124 6.2e-56 221.1 141 85.8
Sopen02g025120 Solanum pennellii HOM05D004301 ORTHO05D005124 6.2e-56 221.1 141 85.8
MSTRG.7223 Avicennia marina HOM05D004301 ORTHO05D005124 8.1e-56 220.7 141 85.1
Gohir.A06G147900 Gossypium hirsutum HOM05D004301 ORTHO05D005124 8.1e-56 220.7 141 85.8
vmacro03693 Vaccinium macrocarpon HOM05D004301 ORTHO05D005124 8.1e-56 220.7 141 87.2
SalBow8G0640 Salvia bowleyana HOM05D004301 ORTHO05D005124 1.1e-55 220.3 141 85.1
Solyc02g080430.3 Solanum lycopersicum HOM05D004301 ORTHO05D005124 1.1e-55 220.3 141 85.8
PGSC0003DMG400016459 Solanum tuberosum HOM05D004301 ORTHO05D005124 1.1e-55 220.3 141 85.8
Migut.M01306 Erythranthe guttata HOM05D004301 ORTHO05D005124 1.4e-55 219.9 141 84.4
Gohir.D06G153800 Gossypium hirsutum HOM05D004301 ORTHO05D005124 1.4e-55 219.9 141 85.8
Gorai.010G179800 Gossypium raimondii HOM05D004301 ORTHO05D005124 1.4e-55 219.9 141 85.8
Thecc.06G088100 Theobroma cacao HOM05D004301 ORTHO05D005124 1.4e-55 219.9 141 85.8
CSS0019231 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 1.8e-55 219.5 141 85.8
Cc00_g35050 Coffea canephora HOM05D004301 ORTHO05D005124 1.8e-55 219.5 141 87.2
TAR626G0955 Trochodendron aralioides HOM05D004301 ORTHO05D005124 2.3e-55 219.2 141 84.4
Prupe.4G022700 Prunus persica HOM05D004301 ORTHO05D005124 3.1e-55 218.8 141 85.8
Oeu033197.1 Olea europaea HOM05D004301 ORTHO05D005124 4.0e-55 218.4 141 85.8
Atru.chr10.2203 Acer truncatum HOM05D004301 ORTHO05D005124 8.9e-55 217.2 141 85.1
CiPaw.09G090400 Carya illinoinensis HOM05D004301 ORTHO05D005124 8.9e-55 217.2 141 83.7
Rhsim13G0155100 Rhododendron simsii HOM05D004301 ORTHO05D005124 8.9e-55 217.2 141 85.8
Haze_06785 Corylus avellana HOM05D004301 ORTHO05D005124 1.5e-54 216.5 141 84.4
Manes.03G210700 Manihot esculenta HOM05D004301 ORTHO05D005124 2.0e-54 216.1 141 85.1
TAR629G3276 Trochodendron aralioides HOM05D004301 ORTHO05D005124 2.0e-54 216.1 141 83.7
Cfa000237 Carpinus fangiana HOM05D004301 ORTHO05D005124 3.4e-54 215.3 142 85.2
Rhsim08G0082200 Rhododendron simsii HOM05D004301 ORTHO05D005124 3.4e-54 215.3 141 84.4
THA.LOC104806300 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 3.4e-54 215.3 141 83.7
COL.COLO4_28865 Corchorus olitorius HOM05D004301 ORTHO05D005124 4.4e-54 214.9 141 83.7
RcHm_v2.0_Chr5g0030661 Rosa chinensis HOM05D004301 ORTHO05D005124 5.8e-54 214.5 141 83.7
CAN.G1175.8 Capsicum annuum HOM05D004301 ORTHO05D005124 1.3e-53 213.4 141 83.7
RcHm_v2.0_Chr5g0030681 Rosa chinensis HOM05D004301 ORTHO05D005124 1.3e-53 213.4 141 83.7
Potri.004G017100 Populus trichocarpa HOM05D004301 ORTHO05D005124 1.7e-53 213.0 141 85.1
ATR0752G175 Amborella trichopoda HOM05D004301 ORTHO05D005124 2.2e-53 212.6 141 83.0
Lj2g0004276 Lotus japonicus HOM05D004301 ORTHO05D005124 2.2e-53 212.6 140 82.9
Sabra04G0009400 Salix brachista HOM05D004301 ORTHO05D005124 2.2e-53 212.6 141 85.1
PGR004G0513 Punica granatum HOM05D004301 ORTHO05D005124 2.9e-53 212.2 142 83.1
Sc05g0009100 Simmondsia chinensis HOM05D004301 ORTHO05D005124 4.9e-53 211.5 143 83.2
Lj5g0024394 Lotus japonicus HOM05D004301 ORTHO05D005124 6.4e-53 211.1 140 82.1
Manes.09G000400 Manihot esculenta HOM05D004301 ORTHO05D005124 6.4e-53 211.1 141 83.7
TPR.G23756 Trifolium pratense HOM05D004301 ORTHO05D005124 6.4e-53 211.1 140 82.1
MELO3C014729.2 Cucumis melo HOM05D004301 ORTHO05D005124 8.3e-53 210.7 141 83.0
FAN16G3380 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.1e-52 210.3 144 79.2
SGA_v2.0_scaffold4G01921 Striga asiatica HOM05D004301 ORTHO05D005124 1.4e-52 209.9 143 80.4
CANSAT56G0804 Cannabis sativa HOM05D004301 ORTHO05D005124 1.9e-52 209.5 141 80.1
CsaV3_4G017560 Cucumis sativus L. HOM05D004301 ORTHO05D005124 1.9e-52 209.5 141 83.0
PSO339G4464 Papaver somniferum HOM05D004301 ORTHO05D005124 3.2e-52 208.8 141 81.6
PSO384G5030 Papaver somniferum HOM05D004301 ORTHO05D005124 3.2e-52 208.8 141 81.6
FvH4_3g18180 Fragaria vesca HOM05D004301 ORTHO05D005124 4.1e-52 208.4 148 77.0
Medtr7g037020 Medicago truncatula HOM05D004301 ORTHO05D005124 4.1e-52 208.4 140 81.4
TWI63G1781 Tripterygium wilfordii HOM05D004301 ORTHO05D005124 5.4e-52 208.0 141 82.3
CARHR252750 Cardamine hirsuta HOM05D004301 ORTHO05D005124 7.1e-52 207.6 141 78.7
QL05p073536 Quercus lobata HOM05D004301 ORTHO05D005124 7.1e-52 207.6 144 81.2
Ca_26119_v3 Cicer arietinum L. HOM05D004301 ORTHO05D005124 1.2e-51 206.8 140 80.7
THA.LOC104813057 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 1.2e-51 206.8 141 79.4
QL05p073775 Quercus lobata HOM05D004301 ORTHO05D005124 1.6e-51 206.5 144 80.6
arahy.Tifrunner.gnm1.ann1.0XE69C Arachis hypogaea HOM05D004301 ORTHO05D005124 2.1e-51 206.1 141 78.7
Glyma.10G264300 Glycine max HOM05D004301 ORTHO05D005124 2.1e-51 206.1 140 80.7
Psat3g175280 Pisum sativum HOM05D004301 ORTHO05D005124 2.1e-51 206.1 140 80.0
arahy.Tifrunner.gnm1.ann1.210EWG Arachis hypogaea HOM05D004301 ORTHO05D005124 2.7e-51 205.7 141 78.7
Hund21400 Selenicereus undatus HOM05D004301 ORTHO05D005124 2.7e-51 205.7 141 79.4
HPP92_021475 Vanilla planifolia HOM05D004301 ORTHO05D005124 2.7e-51 205.7 141 82.3
Phvul.007G037700 Phaseolus vulgaris HOM05D004301 ORTHO05D005124 3.5e-51 205.3 140 80.0
Carub.0006s3270 Capsella rubella HOM05D004301 ORTHO05D005124 4.6e-51 204.9 141 79.4
FAN25G1723 Fragaria x ananassa HOM05D004301 ORTHO05D005124 4.6e-51 204.9 141 79.4
arahy.Tifrunner.gnm1.ann1.6J361A Arachis hypogaea HOM05D004301 ORTHO05D005124 7.8e-51 204.1 141 78.0
Lsat_1_v5_gn_1_128621 Lactuca sativa HOM05D004301 ORTHO05D005124 1.0e-50 203.8 165 70.3
Sp6g04160 Schrenkiella parvula HOM05D004301 ORTHO05D005124 1.3e-50 203.4 141 78.0
AL6G48270 Arabidopsis lyrata HOM05D004301 ORTHO05D005124 1.7e-50 203.0 141 78.7
unitig_748.g7577 Utricularia gibba HOM05D004301 ORTHO05D005124 1.7e-50 203.0 141 78.7
MBI16_g31789_MAGBIO Magnolia biondii HOM05D004301 ORTHO05D005124 2.3e-50 202.6 155 76.1
AT4G04780 Arabidopsis thaliana HOM05D004301 ORTHO05D005124 3.9e-50 201.8 141 78.7
ECA248G0561 Erigeron canadensis HOM05D004301 ORTHO05D005124 3.9e-50 201.8 147 75.5
Aqoxy3G02575 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 1.1e-49 200.3 148 77.7
Oeu037360.1 Olea europaea HOM05D004301 ORTHO05D005124 1.9e-49 199.5 142 77.5
CDE05G1190 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 5.6e-49 198.0 141 78.7
DCAR_008141 Daucus carota HOM05D004301 ORTHO05D005124 9.5e-49 197.2 141 78.7
BcaB01g01837 Brassica carinata HOM05D004301 ORTHO05D005124 2.1e-48 196.1 149 73.2
A09p26100 Brassica napus HOM05D004301 ORTHO05D005124 8.1e-48 194.1 151 72.2
BraA09t38177Z Brassica rapa HOM05D004301 ORTHO05D005124 8.1e-48 194.1 151 72.2
CDE04G1315 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 1.4e-47 193.4 141 76.6
Lalb_Chr17g0338691 Lupinus albus HOM05D004301 ORTHO05D005124 1.4e-47 193.4 141 75.9
Aa31LG9G9690 Aethionema arabicum HOM05D004301 ORTHO05D005124 3.1e-47 192.2 141 75.2
HanXRQChr10g0285201 Helianthus annuus HOM05D004301 ORTHO05D005124 5.2e-47 191.4 160 69.4
VMungo0720G3170 Vigna mungo HOM05D004301 ORTHO05D005124 5.2e-47 191.4 178 63.5
PSO170G5652 Papaver somniferum HOM05D004301 ORTHO05D005124 8.9e-47 190.7 143 74.1
BolC9t56147H Brassica oleracea HOM05D004301 ORTHO05D005124 7.6e-46 187.6 152 70.4
FAN12G2174 Fragaria x ananassa HOM05D004301 ORTHO05D005124 9.9e-46 187.2 144 72.9
RcHm_v2.0_Chr4g0426811 Rosa chinensis HOM05D004301 ORTHO05D005124 1.3e-45 186.8 146 71.2
BcaC04g21325 Brassica carinata HOM05D004301 ORTHO05D005124 1.7e-45 186.4 155 69.0
C09p33120 Brassica napus HOM05D004301 ORTHO05D005124 1.7e-45 186.4 155 69.0
FvH4_4g21200 Fragaria vesca HOM05D004301 ORTHO05D005124 3.8e-45 185.3 148 70.9
FAN07G2330 Fragaria x ananassa HOM05D004301 ORTHO05D005124 4.9e-45 184.9 144 71.5
EL10Ac8g20032 Beta vulgaris HOM05D004301 ORTHO05D005124 8.4e-45 184.1 169 62.7
MD10G1319700 Malus domestica HOM05D004301 ORTHO05D005124 8.4e-45 184.1 141 73.8
Nn7g37600 Nelumbo nucifera HOM05D004301 ORTHO05D005124 1.9e-44 183.0 115 88.7
Ah.09g234990 Amaranthus hybridus HOM05D004301 ORTHO05D005124 4.2e-44 181.8 176 61.4
SEGI_29072 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 1.2e-43 180.3 139 70.5
ClCG02G024420 Citrullus lanatus HOM05D005410 ORTHO05D007394 2.1e-43 179.5 118 83.9
AUR62012686 Chenopodium quinoa HOM05D004301 ORTHO05D005124 1.3e-42 176.8 139 72.7
C02p40060 Brassica napus HOM05D004301 ORTHO05D005124 3.0e-42 175.6 137 73.0
BraA02t07511Z Brassica rapa HOM05D004301 ORTHO05D005124 1.9e-41 172.9 137 71.5
SEGI_24906 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 6.2e-40 167.9 169 57.4
unitig_32.g11531 Utricularia gibba HOM05D004301 ORTHO05D005124 8.1e-40 167.5 119 78.2
arahy.Tifrunner.gnm1.ann1.RW8N71 Arachis hypogaea HOM05D004301 ORTHO05D005124 3.1e-39 165.6 116 78.4
PSO017G1667 Papaver somniferum HOM05D004301 ORTHO05D005124 6.9e-39 164.5 117 78.6
Mapoly0013s0130 Marchantia polymorpha HOM05D004301 ORTHO05D005124 3.4e-38 162.2 141 62.4
PSO478G1674 Papaver somniferum HOM05D004301 ORTHO05D005124 3.4e-38 162.2 130 74.6
FAN20G0317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 7.6e-38 161.0 118 77.1
AagrBONN_evm.TU.Sc2ySwM_362.2472 Anthoceros agrestis HOM05D004301 ORTHO05D005124 3.8e-37 158.7 141 64.5
Duzib192G0451 Durio zibethinus HOM05D004301 ORTHO05D005124 1.9e-36 156.4 115 77.4
Pp3c1_16690 Physcomitrium patens HOM05D004301 ORTHO05D005124 9.6e-33 144.1 139 58.3
Prupe.1G108500 Prunus persica HOM05D004301 ORTHO05D005124 9.6e-33 144.1 131 65.6
Zm00001eb173130 Zea mays HOM05D004301 ORTHO05D005124 1.3e-32 143.7 168 56.0
Oeu033198.1 Olea europaea HOM05D004301 ORTHO05D005124 1.6e-32 143.3 98 80.6
A02p25250 Brassica napus HOM05D004301 ORTHO05D005124 3.6e-32 142.1 137 62.8
BolC2t10033H Brassica oleracea HOM05D004301 ORTHO05D005124 3.1e-31 139.0 137 63.5
SMO200G0228 Selaginella moellendorffii HOM05D004301 ORTHO05D005124 9.0e-31 137.5 159 56.0
Actinidia26923 Actinidia chinensis HOM05D004301 ORTHO05D005124 3.4e-30 135.6 140 61.4
CDE05G0994 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 3.4e-30 135.6 121 65.3
BcaC03g16234 Brassica carinata HOM05D004301 ORTHO05D005124 2.9e-29 132.5 111 69.4
Gorai.005G123500 Gossypium raimondii HOM05D004301 ORTHO05D005124 1.6e-27 126.7 81 87.7
Nitab4.5_0003254g0080 Nicotiana tabacum HOM05D004301 ORTHO05D005124 2.7e-27 125.9 80 87.5
Gohir.D02G172033 Gossypium hirsutum HOM05D004301 ORTHO05D005124 3.9e-26 122.1 80 85.0
CBR_g6572 Chara braunii HOM05D004301 ORTHO05D005124 6.7e-26 121.3 138 54.3
Gohir.D09G045050 Gossypium hirsutum HOM05D004301 ORTHO05D005124 8.7e-26 120.9 80 83.8
Gohir.D10G075550 Gossypium hirsutum HOM05D004301 ORTHO05D005124 5.6e-25 118.2 76 88.2
Gorai.006G117000 Gossypium raimondii HOM05D004301 ORTHO05D005124 5.6e-25 118.2 77 85.7
BcaB05g23708 Brassica carinata HOM05D004301 ORTHO05D005124 1.6e-24 116.7 138 52.9
BcaC03g16233 Brassica carinata HOM05D004301 ORTHO05D005124 2.1e-24 116.3 117 61.5
Psat5g160160 Pisum sativum HOM05D004301 ORTHO05D005124 6.2e-24 114.8 87 72.4
AUR62021971 Chenopodium quinoa HOM05D004301 ORTHO05D005124 6.9e-23 111.3 69 84.1
Psat5g160080 Pisum sativum HOM05D004301 ORTHO05D005124 6.9e-23 111.3 87 71.3
Eucgr.G02030 Eucalyptus grandis HOM05D004301 ORTHO05D005124 9.0e-23 110.9 69 87.0
CAN.G138.7 Capsicum annuum HOM05D004301 ORTHO05D005124 2.9e-21 105.9 162 46.3
FAN21G3317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 3.5e-19 99.0 72 73.6
Nitab4.5_0003254g0090 Nicotiana tabacum HOM05D004301 ORTHO05D005124 2.3e-18 96.3 61 82.0
Gorai.001G171600 Gossypium raimondii HOM05D001075 ORTHO05D001779 2.8e-16 89.4 103 58.3
Medtr1g107580 Medicago truncatula HOM05D004301 ORTHO05D005124 6.2e-16 88.2 72 68.1
Os08g0135600 Oryza sativa ssp. japonica HOM05D004301 ORTHO05D005124 6.2e-16 88.2 69 72.5
Aqoxy3G02572 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 3.1e-15 85.9 57 82.5
RcHm_v2.0_Chr4g0426791 Rosa chinensis HOM05D004301 ORTHO05D005124 4.5e-14 82.0 77 62.3
MCO03G202 Micromonas commoda HOM05D004301 ORTHO05D005124 6.5e-13 78.2 133 39.8
A05p31460 Brassica napus HOM05D004301 ORTHO05D005124 1.0e-10 70.9 72 58.3
BraA05t21985Z Brassica rapa HOM05D004301 ORTHO05D005124 1.0e-10 70.9 72 58.3
SGA_v2.0_scaffold14G06848 Striga asiatica HOM05D004301 ORTHO05D005124 2.3e-10 69.7 42 78.6
A07p00860 Brassica napus HOM05D004301 ORTHO05D005124 5.3e-07 58.5 48 58.3
BraA07t27884Z Brassica rapa HOM05D004301 ORTHO05D005124 5.3e-07 58.5 48 58.3
C05p45830 Brassica napus HOM05D004301 ORTHO05D005124 2.6e-06 56.2 47 61.7
C05p45820 Brassica napus HOM05D004301 ORTHO05D005124 3.4e-06 55.8 49 59.2
A06p38190 Brassica napus HOM05D004301 ORTHO05D005124 4.5e-06 55.5 97 43.3
BraA06t26734Z Brassica rapa HOM05D004301 ORTHO05D005124 4.5e-06 55.5 97 43.3
BolC5t33302H Brassica oleracea HOM05D004301 ORTHO05D005124 5.9e-06 55.1 49 59.2


User provided reference genes

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