Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g00370 Coffea canephora HOM05D004259 ORTHO05D005014 2.3e-31 138.3 69 100.0
Cc10_g04310 Coffea canephora HOM05D004259 ORTHO05D005014 3.2e-17 91.3 52 84.6
Cc11_g02680 Coffea canephora HOM05D004259 ORTHO05D005014 2.7e-16 88.2 52 80.8
Cc00_g16720 Coffea canephora HOM05D004259 ORTHO05D005014 8.7e-15 83.2 52 76.9
Cc09_g06650 Coffea canephora HOM05D004259 ORTHO05D005014 3.3e-14 81.3 42 90.5
Cc01_g09720 Coffea canephora HOM05D004259 ORTHO05D005014 4.8e-13 77.4 43 86.0
unitig_26.g10027 Utricularia gibba HOM05D004259 ORTHO05D005014 2.4e-12 75.1 52 69.2
MSTRG.24327 Avicennia marina HOM05D004259 ORTHO05D005014 3.1e-12 74.7 52 69.2
CSS0003524 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 3.1e-12 74.7 52 65.4
SGA_v2.0_scaffold204G41641 Striga asiatica HOM05D004259 ORTHO05D005014 3.1e-12 74.7 52 67.3
Cc02_g31720 Coffea canephora HOM05D004259 ORTHO05D005014 4.0e-12 74.3 42 85.7
Cc10_g11800 Coffea canephora HOM05D006912 ORTHO05D008686 9.0e-12 73.2 71 57.7
Gohir.D01G124400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 9.0e-12 73.2 52 67.3
Gohir.D03G074850 Gossypium hirsutum HOM05D004259 ORTHO05D005014 9.0e-12 73.2 52 67.3
Gohir.D09G120150 Gossypium hirsutum HOM05D004259 ORTHO05D005014 9.0e-12 73.2 52 67.3
Gohir.D11G345100 Gossypium hirsutum HOM05D004259 ORTHO05D005014 9.0e-12 73.2 52 67.3
Gohir.D12G080700 Gossypium hirsutum HOM05D004259 ORTHO05D005014 9.0e-12 73.2 52 67.3
Duzib128G0657 Durio zibethinus HOM05D004259 ORTHO05D005014 1.2e-11 72.8 50 72.0
Gohir.D04G089650 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.2e-11 72.8 52 65.4
Gohir.D09G088725 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.2e-11 72.8 47 70.2
Gorai.007G375500 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.2e-11 72.8 52 67.3
SalBow2G1152 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.2e-11 72.8 52 69.2
SalBow2G2463 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.2e-11 72.8 52 69.2
SalBow2G2610 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.2e-11 72.8 52 69.2
SalBow3G4106 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.2e-11 72.8 52 69.2
CSS0037728 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 1.5e-11 72.4 52 63.5
Gorai.011G277900 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.5e-11 72.4 46 73.9
vmacro04457 Vaccinium macrocarpon HOM05D004259 ORTHO05D005014 1.5e-11 72.4 52 61.5
Gohir.A11G326200 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.0e-11 72.0 52 67.3
Thecc.05G042500 Theobroma cacao HOM05D004259 ORTHO05D005014 2.0e-11 72.0 52 63.5
HanXRQChr04g0103531 Helianthus annuus HOM05D004259 ORTHO05D005014 2.6e-11 71.6 52 63.5
Lsat_1_v5_gn_1_20280 Lactuca sativa HOM05D004259 ORTHO05D005014 2.6e-11 71.6 52 63.5
Lj3C736T6 Lonicera japonica HOM05D004259 ORTHO05D005014 2.6e-11 71.6 52 63.5
Oeu018211.1 Olea europaea HOM05D004259 ORTHO05D005014 2.6e-11 71.6 52 65.4
Gohir.D02G123750 Gossypium hirsutum HOM05D004259 ORTHO05D005014 3.4e-11 71.2 52 65.4
THA.LOC104806568 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 3.4e-11 71.2 50 66.0
Gorai.008G056700 Gossypium raimondii HOM05D004259 ORTHO05D005014 4.5e-11 70.9 52 65.4
Rhsim10G0028600 Rhododendron simsii HOM05D004259 ORTHO05D005014 4.5e-11 70.9 52 61.5
COL.COLO4_14836 Corchorus olitorius HOM05D004259 ORTHO05D005014 7.6e-11 70.1 52 63.5
MELO3C010882.2 Cucumis melo HOM05D004259 ORTHO05D005014 7.6e-11 70.1 52 67.3
Migut.N02703 Erythranthe guttata HOM05D004259 ORTHO05D005014 7.6e-11 70.1 48 68.8
Peaxi162Scf00929g00211 Petunia axillaris HOM05D004259 ORTHO05D005014 7.6e-11 70.1 52 61.5
CsaV3_2G028020 Cucumis sativus L. HOM05D004259 ORTHO05D005014 9.9e-11 69.7 51 68.6
Gorai.005G130400 Gossypium raimondii HOM05D004259 ORTHO05D005014 9.9e-11 69.7 52 63.5
Rhsim10G0028100 Rhododendron simsii HOM05D004259 ORTHO05D005014 9.9e-11 69.7 52 59.6
THA.LOC104809222 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 9.9e-11 69.7 48 68.8
Nitab4.5_0000111g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 1.3e-10 69.3 52 59.6
Nitab4.5_0002045g0130 Nicotiana tabacum HOM05D004259 ORTHO05D005014 1.3e-10 69.3 52 59.6
Gorai.004G133100 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.7e-10 68.9 52 61.5
Peaxi162Scf00162g00029 Petunia axillaris HOM05D004259 ORTHO05D005014 1.7e-10 68.9 52 59.6
C04p10400 Brassica napus HOM05D004259 ORTHO05D005014 2.2e-10 68.6 46 71.7
CAN.G65.190 Capsicum annuum HOM05D004259 ORTHO05D005014 2.2e-10 68.6 52 59.6
Potri.003G094800 Populus trichocarpa HOM05D004259 ORTHO05D005014 2.2e-10 68.6 52 65.4
Sabra03G0064000 Salix brachista HOM05D004259 ORTHO05D005014 2.2e-10 68.6 52 65.4
Sabra11G0061200 Salix brachista HOM05D004259 ORTHO05D005014 2.2e-10 68.6 52 65.4
BcaC02g11869 Brassica carinata HOM05D004259 ORTHO05D005014 2.9e-10 68.2 43 74.4
BolC4t22638H Brassica oleracea HOM05D004259 ORTHO05D005014 2.9e-10 68.2 43 74.4
BraA05t19805Z Brassica rapa HOM05D004259 ORTHO05D005014 2.9e-10 68.2 43 74.4
FAN15G2861 Fragaria x ananassa HOM05D001625 ORTHO05D005014 2.9e-10 68.2 52 59.6
FAN20G1942 Fragaria x ananassa HOM05D004259 ORTHO05D005014 2.9e-10 68.2 52 59.6
FAN27G2417 Fragaria x ananassa HOM05D004259 ORTHO05D005014 2.9e-10 68.2 52 59.6
Manes.08G078200 Manihot esculenta HOM05D004259 ORTHO05D005014 2.9e-10 68.2 52 59.6
Nitab4.5_0002664g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 2.9e-10 68.2 52 61.5
SalBow2G0695 Salvia bowleyana HOM05D004259 ORTHO05D005014 2.9e-10 68.2 52 65.4
SalBow2G2012 Salvia bowleyana HOM05D004259 ORTHO05D005014 2.9e-10 68.2 52 65.4
A05p08400 Brassica napus HOM05D004259 ORTHO05D005014 3.8e-10 67.8 43 74.4
CiPaw.15G061500 Carya illinoinensis HOM05D004259 ORTHO05D005014 3.8e-10 67.8 46 69.6
MBI02_g17334_MAGBIO Magnolia biondii HOM05D004259 ORTHO05D005014 3.8e-10 67.8 52 63.5
Ciclev10012027m.g Citrus clementina HOM05D004259 ORTHO05D005014 4.9e-10 67.4 52 63.5
Haze_17543 Corylus avellana HOM05D004259 ORTHO05D005014 4.9e-10 67.4 46 69.6
FvH4_2g34610 Fragaria vesca HOM05D004259 ORTHO05D005014 4.9e-10 67.4 52 59.6
Gorai.012G099900 Gossypium raimondii HOM05D004259 ORTHO05D005014 4.9e-10 67.4 52 59.6
Hma1.2p1_0718F.1_g208420 Hydrangea macrophylla HOM05D004259 ORTHO05D005014 4.9e-10 67.4 52 63.5
QL02p005360 Quercus lobata HOM05D004259 ORTHO05D005014 4.9e-10 67.4 46 67.4
Sed0023883 Sechium edule HOM05D004259 ORTHO05D005014 4.9e-10 67.4 52 65.4
TWI53G0519 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 4.9e-10 67.4 50 66.0
Lalb_Chr19g0129351 Lupinus albus HOM05D004259 ORTHO05D005014 6.4e-10 67.0 52 61.5
Nn1g05830 Nelumbo nucifera HOM05D004259 ORTHO05D005014 6.4e-10 67.0 50 64.0
Sc07g0003460 Simmondsia chinensis HOM05D004259 ORTHO05D005014 8.4e-10 66.6 52 59.6
MD08G1103300 Malus domestica HOM05D004259 ORTHO05D005014 1.1e-09 66.2 52 63.5
Solyc06g073510.3 Solanum lycopersicum HOM05D004259 ORTHO05D005014 1.1e-09 66.2 53 62.3
Sopen06g029870 Solanum pennellii HOM05D004259 ORTHO05D005014 1.1e-09 66.2 53 62.3
PGSC0003DMG400027003 Solanum tuberosum HOM05D004259 ORTHO05D005014 1.1e-09 66.2 53 62.3
GSVIVG01009522001 Vitis vinifera HOM05D004259 ORTHO05D005014 1.1e-09 66.2 48 66.7
Cpa.g.sc973.4 Carica papaya HOM05D004259 ORTHO05D005014 1.4e-09 65.9 52 59.6
Gohir.D10G134400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.4e-09 65.9 43 72.1
RcHm_v2.0_Chr6g0307691 Rosa chinensis HOM05D004259 ORTHO05D005014 1.4e-09 65.9 52 57.7
TAR376G0692 Trochodendron aralioides HOM05D004259 ORTHO05D005014 1.4e-09 65.9 48 64.6
Ah.05g168820 Amaranthus hybridus HOM05D001625 ORTHO05D005014 2.4e-09 65.1 52 57.7
ATR0100G023 Amborella trichopoda HOM05D004259 ORTHO05D005014 3.2e-09 64.7 52 59.6
Cfa018528 Carpinus fangiana HOM05D004259 ORTHO05D005014 3.2e-09 64.7 46 67.4
AL4G34050 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 4.2e-09 64.3 59 52.5
AL4G34080 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 4.2e-09 64.3 59 52.5
BcaB02g09273 Brassica carinata HOM05D004259 ORTHO05D005014 4.2e-09 64.3 48 62.5
Thhalv10016846m.g Eutrema salsugineum HOM05D004259 ORTHO05D005014 4.2e-09 64.3 48 62.5
AT2G37560 Arabidopsis thaliana HOM05D004259 ORTHO05D005014 5.4e-09 63.9 43 67.4
CANSAT01G2810 Cannabis sativa HOM05D004259 ORTHO05D005014 5.4e-09 63.9 52 55.8
CDE10G1325 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 7.1e-09 63.5 52 57.7
Phvul.001G021100 Phaseolus vulgaris HOM05D004259 ORTHO05D005014 7.1e-09 63.5 46 67.4
Atru.chr8.1940 Acer truncatum HOM05D004259 ORTHO05D005014 9.3e-09 63.2 46 65.2
Carub.0004s1948 Capsella rubella HOM05D004259 ORTHO05D005014 9.3e-09 63.2 48 60.4
Haze_17552 Corylus avellana HOM05D004259 ORTHO05D005014 9.3e-09 63.2 43 69.8
Peaxi162Scf00003g02311 Petunia axillaris HOM05D004259 ORTHO05D005014 9.3e-09 63.2 53 58.5
PSO339G6255 Papaver somniferum HOM05D004259 ORTHO05D005014 1.2e-08 62.8 54 61.1
Sp4g19910 Schrenkiella parvula HOM05D004259 ORTHO05D005014 1.2e-08 62.8 48 62.5
AUR62022427 Chenopodium quinoa HOM05D004259 ORTHO05D005014 1.6e-08 62.4 52 57.7
AUR62039303 Chenopodium quinoa HOM05D004259 ORTHO05D005014 1.6e-08 62.4 52 57.7
Cc06_g20720 Coffea canephora HOM05D004259 ORTHO05D005014 1.6e-08 62.4 40 77.5
VMungo0647G0522 Vigna mungo HOM05D004259 ORTHO05D005014 1.6e-08 62.4 46 65.2
Gorai.006G043100 Gossypium raimondii HOM05D004259 ORTHO05D005014 2.1e-08 62.0 43 67.4
Gorai.011G153000 Gossypium raimondii HOM05D004259 ORTHO05D005014 2.1e-08 62.0 45 64.4
Lj5g0003666 Lotus japonicus HOM05D004259 ORTHO05D005014 2.7e-08 61.6 51 56.9
PSO541G1765 Papaver somniferum HOM05D004259 ORTHO05D005014 2.7e-08 61.6 54 59.3
PSO675G0522 Papaver somniferum HOM05D004259 ORTHO05D005014 2.7e-08 61.6 54 59.3
EL10Ac3g06655 Beta vulgaris HOM05D004259 ORTHO05D005014 3.5e-08 61.2 52 55.8
Prupe.1G438300 Prunus persica HOM05D004259 ORTHO05D005014 4.6e-08 60.8 52 57.7
HPP92_027220 Vanilla planifolia HOM05D004259 ORTHO05D005014 4.6e-08 60.8 53 60.4
ClCG08G015740 Citrullus lanatus HOM05D004259 ORTHO05D005014 6.0e-08 60.5 44 68.2
MD15G1084600 Malus domestica HOM05D004259 ORTHO05D005014 6.0e-08 60.5 56 55.4
Sabra15G0136400 Salix brachista HOM05D004259 ORTHO05D004947 6.0e-08 60.5 59 57.6
Aqoxy7G01016 Aquilegia oxysepala HOM05D004259 ORTHO05D005014 7.9e-08 60.1 47 59.6
CARHR132030 Cardamine hirsuta HOM05D004259 ORTHO05D005014 1.0e-07 59.7 43 65.1
PGR031G2227 Punica granatum HOM05D004259 ORTHO05D005014 1.0e-07 59.7 53 58.5
Gohir.D09G037800 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.3e-07 59.3 43 65.1
TWI53G0792 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 1.3e-07 59.3 50 58.0
Aa31sc112G60 Aethionema arabicum HOM05D004259 ORTHO05D005014 1.8e-07 58.9 48 58.3
arahy.Tifrunner.gnm1.ann1.1PWX74 Arachis hypogaea HOM05D004259 ORTHO05D005014 1.8e-07 58.9 49 63.3
arahy.Tifrunner.gnm1.ann1.63NC9C Arachis hypogaea HOM05D004259 ORTHO05D005014 1.8e-07 58.9 49 63.3
Psat6g012600 Pisum sativum HOM05D004259 ORTHO05D005014 3.0e-07 58.2 40 70.0
Medtr1g019770 Medicago truncatula HOM05D004259 ORTHO05D005014 6.7e-07 57.0 40 70.0
Eucgr.F00239 Eucalyptus grandis HOM05D004259 ORTHO05D005014 8.7e-07 56.6 45 60.0
Actinidia29866 Actinidia chinensis HOM05D004259 ORTHO05D005014 1.1e-06 56.2 43 60.5
SEGI_22221 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 1.1e-06 56.2 48 58.3
Glyma.14G082100 Glycine max HOM05D004259 ORTHO05D005014 1.5e-06 55.8 50 60.0
Aa31LG5G23020 Aethionema arabicum HOM05D004259 ORTHO05D005014 1.9e-06 55.5 48 64.6
Ca_01811_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 1.9e-06 55.5 51 56.9
Ca_29610_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 1.9e-06 55.5 51 56.9


User provided reference genes

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