Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g00250 Coffea canephora HOM05D000027 ORTHO05D002055 4.2e-18 93.6 45 100.0
Cc00_g00240 Coffea canephora HOM05D000027 ORTHO05D002055 3.4e-12 73.9 44 75.0
Cc00_g26100 Coffea canephora HOM05D000027 ORTHO05D002055 3.4e-12 73.9 44 75.0
TAR633G1397 Trochodendron aralioides HOM05D000027 ORTHO05D002055 5.5e-10 66.6 43 67.4
TAR633G2560 Trochodendron aralioides HOM05D000027 ORTHO05D002055 5.5e-10 66.6 43 67.4
Dinv35781 Davidia involucrata HOM05D000027 ORTHO05D002055 1.2e-09 65.5 44 61.4
Rhsim01G0212400 Rhododendron simsii HOM05D000027 ORTHO05D002055 1.2e-09 65.5 43 67.4
Peaxi162Scf00102g01874 Petunia axillaris HOM05D000027 ORTHO05D002055 1.6e-09 65.1 42 66.7
TAR369G1151 Trochodendron aralioides HOM05D000027 ORTHO05D002055 1.6e-09 65.1 44 63.6
FvH4_6g16230 Fragaria vesca HOM05D000027 ORTHO05D002055 2.7e-09 64.3 39 69.2
FAN14G0569 Fragaria x ananassa HOM05D000027 ORTHO05D002055 2.7e-09 64.3 39 69.2
QL07p043665 Quercus lobata HOM05D000027 ORTHO05D002055 3.5e-09 63.9 40 67.5
FAN05G3524 Fragaria x ananassa HOM05D000027 ORTHO05D002055 4.6e-09 63.5 40 65.0
RcHm_v2.0_Chr3g0470071 Rosa chinensis HOM05D000027 ORTHO05D002055 4.6e-09 63.5 39 69.2
Thecc.05G064800 Theobroma cacao HOM05D000027 ORTHO05D002055 4.6e-09 63.5 44 59.1
CiPaw.13G118500 Carya illinoinensis HOM05D000027 ORTHO05D002055 6.1e-09 63.2 41 65.9
Eucgr.B02537 Eucalyptus grandis HOM05D000027 ORTHO05D002055 6.1e-09 63.2 44 61.4
Lj2A223T47 Lonicera japonica HOM05D000027 ORTHO05D002055 6.1e-09 63.2 45 62.2
vmacro14410 Vaccinium macrocarpon HOM05D000027 ORTHO05D002055 7.9e-09 62.8 43 65.1
FAN09G3135 Fragaria x ananassa HOM05D000027 ORTHO05D002055 1.0e-08 62.4 40 65.0
Peaxi162Scf00488g00026 Petunia axillaris HOM05D000027 ORTHO05D002055 1.0e-08 62.4 44 59.1
CAN.G509.21 Capsicum annuum HOM05D000027 ORTHO05D002055 1.3e-08 62.0 40 67.5
CiPaw.10G130600 Carya illinoinensis HOM05D000027 ORTHO05D002055 1.3e-08 62.0 37 73.0
Cc01_g10570 Coffea canephora HOM05D000027 ORTHO05D002055 1.3e-08 62.0 38 68.4
Duzib168G1807 Durio zibethinus HOM05D000027 ORTHO05D002055 1.3e-08 62.0 43 65.1
Eucgr.A01691 Eucalyptus grandis HOM05D000027 ORTHO05D002055 1.8e-08 61.6 44 59.1
Potri.009G008100 Populus trichocarpa HOM05D000027 ORTHO05D002055 1.8e-08 61.6 37 73.0
Thecc.09G348000 Theobroma cacao HOM05D000027 ORTHO05D002055 1.8e-08 61.6 43 62.8
COL.COLO4_34702 Corchorus olitorius HOM05D000027 ORTHO05D002055 2.3e-08 61.2 37 70.3
Hma1.2p1_0344F.1_g131110 Hydrangea macrophylla HOM05D000027 ORTHO05D002055 2.3e-08 61.2 43 60.5
Hma1.2p1_1942F.1_g308420 Hydrangea macrophylla HOM05D000027 ORTHO05D002055 2.3e-08 61.2 43 60.5
GSVIVG01025724001 Vitis vinifera HOM05D000027 ORTHO05D002055 2.3e-08 61.2 39 64.1
Dinv34702 Davidia involucrata HOM05D000027 ORTHO05D002055 3.0e-08 60.8 43 62.8
Dinv35779 Davidia involucrata HOM05D000027 ORTHO05D002055 3.0e-08 60.8 44 59.1
Hma1.2p1_0205F.1_g087120 Hydrangea macrophylla HOM05D000027 ORTHO05D002055 3.0e-08 60.8 38 65.8
Lj2C116T15 Lonicera japonica HOM05D000027 ORTHO05D002055 3.0e-08 60.8 38 65.8
Nitab4.5_0015089g0010 Nicotiana tabacum HOM05D000027 ORTHO05D002055 3.0e-08 60.8 44 59.1
GSVIVG01031515001 Vitis vinifera HOM05D000027 ORTHO05D002055 3.0e-08 60.8 43 58.1
Atru.chr8.1824 Acer truncatum HOM05D000027 ORTHO05D002055 3.9e-08 60.5 39 61.5
CSS0035048 Camellia sinensis var. sinensis HOM05D000027 ORTHO05D002055 3.9e-08 60.5 43 62.8
DCAR_018783 Daucus carota HOM05D000027 ORTHO05D002055 3.9e-08 60.5 38 65.8
Oeu056282.1 Olea europaea HOM05D000027 ORTHO05D002055 3.9e-08 60.5 37 70.3
Duzib093G2053 Durio zibethinus HOM05D000027 ORTHO05D002055 5.1e-08 60.1 44 54.5
Nn1g04188 Nelumbo nucifera HOM05D000027 ORTHO05D002055 5.1e-08 60.1 38 63.2
Solyc10g086240.2 Solanum lycopersicum HOM05D000027 ORTHO05D002055 5.1e-08 60.1 40 65.0
PGSC0003DMG400031360 Solanum tuberosum HOM05D000027 ORTHO05D002055 5.1e-08 60.1 40 65.0
Actinidia03707 Actinidia chinensis HOM05D000027 ORTHO05D002055 6.7e-08 59.7 40 57.5
Cpa.g.sc1.22 Carica papaya HOM05D000027 ORTHO05D002055 6.7e-08 59.7 41 61.0
Cfa017596 Carpinus fangiana HOM05D000027 ORTHO05D002055 6.7e-08 59.7 43 58.1
Nn2g11573 Nelumbo nucifera HOM05D000027 ORTHO05D002055 6.7e-08 59.7 38 63.2
QL01p015912 Quercus lobata HOM05D000027 ORTHO05D002055 6.7e-08 59.7 38 68.4
Sc02g0001690 Simmondsia chinensis HOM05D000027 ORTHO05D002055 6.7e-08 59.7 43 58.1
Atru.chr8.1825 Acer truncatum HOM05D000027 ORTHO05D002055 8.7e-08 59.3 39 61.5
Cfa017595 Carpinus fangiana HOM05D000027 ORTHO05D002055 8.7e-08 59.3 37 64.9
Haze_20558 Corylus avellana HOM05D000027 ORTHO05D002055 8.7e-08 59.3 37 64.9
Manes.04G015600 Manihot esculenta HOM05D000027 ORTHO05D002055 8.7e-08 59.3 40 60.0
Rhsim04G0144400 Rhododendron simsii HOM05D000027 ORTHO05D002055 8.7e-08 59.3 37 64.9
Ciclev10011571m.g Citrus clementina HOM05D000027 ORTHO05D002055 1.1e-07 58.9 38 65.8
CsaV3_6G014190 Cucumis sativus L. HOM05D000027 ORTHO05D002055 1.1e-07 58.9 37 64.9
MD03G1125900 Malus domestica HOM05D000027 ORTHO05D002055 1.1e-07 58.9 37 67.6
Prupe.6G108000 Prunus persica HOM05D000027 ORTHO05D002055 1.1e-07 58.9 37 67.6
SalBow5G3261 Salvia bowleyana HOM05D000027 ORTHO05D002055 1.1e-07 58.9 44 59.1
SalBow5G4441 Salvia bowleyana HOM05D000027 ORTHO05D002055 1.1e-07 58.9 44 59.1
TWI79G0441 Tripterygium wilfordii HOM05D000027 ORTHO05D002055 1.1e-07 58.9 38 65.8
SGA_v2.0_scaffold127G34042 Striga asiatica HOM05D000027 ORTHO05D002055 1.5e-07 58.5 37 73.0
vmacro08780 Vaccinium macrocarpon HOM05D000027 ORTHO05D002055 1.5e-07 58.5 37 64.9
BcaB02g09314 Brassica carinata HOM05D000027 ORTHO05D002055 1.9e-07 58.2 38 63.2
BcaB02g09315 Brassica carinata HOM05D000027 ORTHO05D002055 1.9e-07 58.2 38 63.2
BcaC02g11820 Brassica carinata HOM05D000027 ORTHO05D002055 1.9e-07 58.2 38 63.2
A05p08870 Brassica napus HOM05D000027 ORTHO05D002055 1.9e-07 58.2 38 63.2
C04p11000 Brassica napus HOM05D000027 ORTHO05D002055 1.9e-07 58.2 38 63.2
BraA05t19852Z Brassica rapa HOM05D000027 ORTHO05D002055 1.9e-07 58.2 38 63.2
Migut.L01696 Erythranthe guttata HOM05D000027 ORTHO05D002055 1.9e-07 58.2 38 68.4
Thhalv10016577m.g Eutrema salsugineum HOM05D000027 ORTHO05D002055 1.9e-07 58.2 38 63.2
Hma1.2p1_0547F.1_g176470 Hydrangea macrophylla HOM05D000027 ORTHO05D002055 1.9e-07 58.2 38 65.8
Peaxi162Scf00120g00037 Petunia axillaris HOM05D000027 ORTHO05D002055 1.9e-07 58.2 42 61.9
Atru.chr3.3554 Acer truncatum HOM05D000027 ORTHO05D002055 2.5e-07 57.8 41 63.4
CANSAT80G2891 Cannabis sativa HOM05D000027 ORTHO05D002055 2.5e-07 57.8 42 61.9
Cc00_g04380 Coffea canephora HOM05D000027 ORTHO05D002055 2.5e-07 57.8 44 54.5
COL.COLO4_26974 Corchorus olitorius HOM05D000027 ORTHO05D002055 2.5e-07 57.8 38 63.2
Manes.11G150400 Manihot esculenta HOM05D000027 ORTHO05D002055 2.5e-07 57.8 38 63.2
Os10g0442400 Oryza sativa ssp. japonica HOM05D000027 ORTHO05D002055 2.5e-07 57.8 38 57.9
Peaxi162Scf00120g00310 Petunia axillaris HOM05D000027 ORTHO05D002055 2.5e-07 57.8 42 61.9
Prupe.6G233600 Prunus persica HOM05D000027 ORTHO05D002055 2.5e-07 57.8 37 64.9
Sc07g0004690 Simmondsia chinensis HOM05D000027 ORTHO05D002055 2.5e-07 57.8 38 60.5
Zm00001eb047200 Zea mays HOM05D000027 ORTHO05D002055 2.5e-07 57.8 38 60.5
AL4G33210 Arabidopsis lyrata HOM05D000027 ORTHO05D002055 3.3e-07 57.4 38 63.2
AT2G36970 Arabidopsis thaliana HOM05D000027 ORTHO05D002055 3.3e-07 57.4 38 63.2
BolC4t22743H Brassica oleracea HOM05D000027 ORTHO05D002055 3.3e-07 57.4 38 60.5
CSS0020428 Camellia sinensis var. sinensis HOM05D000027 ORTHO05D002055 3.3e-07 57.4 40 57.5
CARHR131430 Cardamine hirsuta HOM05D000027 ORTHO05D002055 3.3e-07 57.4 38 63.2
Nitab4.5_0000856g0190 Nicotiana tabacum HOM05D000027 ORTHO05D002055 3.3e-07 57.4 42 61.9
Nitab4.5_0004928g0040 Nicotiana tabacum HOM05D000027 ORTHO05D002055 3.3e-07 57.4 42 61.9
Sabra04G0145300 Salix brachista HOM05D000027 ORTHO05D002055 3.3e-07 57.4 44 54.5
Aqoxy1G01165 Aquilegia oxysepala HOM05D000027 ORTHO05D002055 4.3e-07 57.0 38 60.5
ClCG02G021390 Citrullus lanatus HOM05D000027 ORTHO05D002055 4.3e-07 57.0 37 62.2
Ciclev10029902m.g Citrus clementina HOM05D000027 ORTHO05D002055 4.3e-07 57.0 37 67.6
FvH4_6g16250 Fragaria vesca HOM05D000027 ORTHO05D002055 4.3e-07 57.0 40 62.5
FAN02G2012 Fragaria x ananassa HOM05D000027 ORTHO05D002055 4.3e-07 57.0 40 62.5
FAN05G3198 Fragaria x ananassa HOM05D000027 ORTHO05D002055 4.3e-07 57.0 40 62.5
FAN14G5632 Fragaria x ananassa HOM05D000027 ORTHO05D002055 4.3e-07 57.0 40 62.5
arahy.Tifrunner.gnm1.ann1.59H3M1 Arachis hypogaea HOM05D000027 ORTHO05D002055 5.7e-07 56.6 36 63.9
arahy.Tifrunner.gnm1.ann1.72QZIF Arachis hypogaea HOM05D000027 ORTHO05D002055 5.7e-07 56.6 36 63.9
BcaB02g09313 Brassica carinata HOM05D000027 ORTHO05D002055 5.7e-07 56.6 38 60.5
A05p08880 Brassica napus HOM05D000027 ORTHO05D002055 5.7e-07 56.6 38 60.5
C04p11010 Brassica napus HOM05D000027 ORTHO05D002055 5.7e-07 56.6 38 60.5
BraA05t19853Z Brassica rapa HOM05D000027 ORTHO05D002055 5.7e-07 56.6 38 60.5
MELO3C026915.2 Cucumis melo HOM05D000027 ORTHO05D002055 5.7e-07 56.6 37 62.2
FvH4_3g31170 Fragaria vesca HOM05D000027 ORTHO05D002055 5.7e-07 56.6 38 63.2
FAN11G3008 Fragaria x ananassa HOM05D000027 ORTHO05D002055 5.7e-07 56.6 38 63.2
FAN16G0307 Fragaria x ananassa HOM05D000027 ORTHO05D002055 5.7e-07 56.6 38 63.2
FAN21G2266 Fragaria x ananassa HOM05D000027 ORTHO05D002055 5.7e-07 56.6 38 63.2
Prupe.6G233100 Prunus persica HOM05D000027 ORTHO05D002055 5.7e-07 56.6 44 54.5
RcHm_v2.0_Chr3g0470101 Rosa chinensis HOM05D000027 ORTHO05D002055 5.7e-07 56.6 40 60.0
RcHm_v2.0_Chr5g0057811 Rosa chinensis HOM05D000027 ORTHO05D002055 5.7e-07 56.6 38 63.2
Sed0014067 Sechium edule HOM05D000027 ORTHO05D002055 5.7e-07 56.6 37 62.2
Solyc11g006110.1 Solanum lycopersicum HOM05D000027 ORTHO05D002055 5.7e-07 56.6 40 62.5
TWI74G1324 Tripterygium wilfordii HOM05D000027 ORTHO05D002055 5.7e-07 56.6 37 64.9
HPP92_026241 Vanilla planifolia HOM05D000027 ORTHO05D002055 5.7e-07 56.6 44 56.8
EL10Ac8g20554 Beta vulgaris HOM05D000027 ORTHO05D002055 7.4e-07 56.2 38 63.2
BolC4t22727H Brassica oleracea HOM05D000027 ORTHO05D002055 7.4e-07 56.2 37 62.2
Gohir.D03G137400 Gossypium hirsutum HOM05D000027 ORTHO05D002055 7.4e-07 56.2 42 59.5
Gorai.003G144500 Gossypium raimondii HOM05D000027 ORTHO05D002055 7.4e-07 56.2 42 59.5
Lj2C1016T0 Lonicera japonica HOM05D000027 ORTHO05D002055 7.4e-07 56.2 38 65.8
Peaxi162Scf00701g00513 Petunia axillaris HOM05D000027 ORTHO05D002055 7.4e-07 56.2 42 54.8
Sp4g19250 Schrenkiella parvula HOM05D000027 ORTHO05D002055 7.4e-07 56.2 38 63.2
PGSC0003DMG400028671 Solanum tuberosum HOM05D000027 ORTHO05D002055 7.4e-07 56.2 40 62.5
Zm00001eb222590 Zea mays HOM05D000027 ORTHO05D002055 7.4e-07 56.2 38 57.9
Nitab4.5_0002130g0070 Nicotiana tabacum HOM05D000027 ORTHO05D002055 9.7e-07 55.8 44 54.5
PGSC0003DMG400021555 Solanum tuberosum HOM05D000027 ORTHO05D002055 9.7e-07 55.8 43 53.5
CARHR131440 Cardamine hirsuta HOM05D000027 ORTHO05D002055 1.3e-06 55.5 38 60.5
MBI18_g20775_MAGBIO Magnolia biondii HOM05D000027 ORTHO05D002055 1.3e-06 55.5 44 52.3
Manes.08G009600 Manihot esculenta HOM05D000027 ORTHO05D002055 1.3e-06 55.5 42 57.1
Prupe.6G233400 Prunus persica HOM05D000027 ORTHO05D002055 1.3e-06 55.5 37 59.5
PGSC0003DMG400028670 Solanum tuberosum HOM05D000027 ORTHO05D002055 1.3e-06 55.5 40 62.5
SGA_v2.0_scaffold40G15507 Striga asiatica HOM05D000027 ORTHO05D002055 1.3e-06 55.5 38 60.5
BcaB02g09316 Brassica carinata HOM05D000027 ORTHO05D002055 1.6e-06 55.1 38 60.5
BcaC02g11819 Brassica carinata HOM05D000027 ORTHO05D002055 1.6e-06 55.1 38 57.9
Haze_20557 Corylus avellana HOM05D000027 ORTHO05D002055 1.6e-06 55.1 39 61.5
Gohir.A03G031000 Gossypium hirsutum HOM05D000027 ORTHO05D002055 1.6e-06 55.1 41 61.0
Potri.007G095000 Populus trichocarpa HOM05D000027 ORTHO05D000066 1.6e-06 55.1 44 56.8
Prupe.6G233200 Prunus persica HOM05D000027 ORTHO05D002055 1.6e-06 55.1 40 55.0
MSTRG.5761 Avicennia marina HOM05D000027 ORTHO05D002055 2.2e-06 54.7 39 51.3
BolC4t22747H Brassica oleracea HOM05D000027 ORTHO05D002055 2.2e-06 54.7 37 59.5
Hma1.2p1_0205F.1_g087130 Hydrangea macrophylla HOM05D000027 ORTHO05D002055 2.2e-06 54.7 38 60.5
CANSAT80G2519 Cannabis sativa HOM05D000027 ORTHO05D002055 2.8e-06 54.3 40 60.0
Carub.0004s1881 Capsella rubella HOM05D000027 ORTHO05D002055 2.8e-06 54.3 38 60.5
Cc01_g10580 Coffea canephora HOM05D000027 ORTHO05D002055 2.8e-06 54.3 41 58.5
FAN09G1158 Fragaria x ananassa HOM05D000027 ORTHO05D002055 2.8e-06 54.3 40 60.0
Nitab4.5_0002632g0080 Nicotiana tabacum HOM05D000027 ORTHO05D002055 2.8e-06 54.3 43 53.5
Hund21290 Selenicereus undatus HOM05D000027 ORTHO05D002055 2.8e-06 54.3 38 60.5
arahy.Tifrunner.gnm1.ann1.YZJ0EY Arachis hypogaea HOM05D000027 ORTHO05D002055 3.7e-06 53.9 37 59.5
DCAR_020823 Daucus carota HOM05D000027 ORTHO05D002055 3.7e-06 53.9 37 59.5
ECA238G0595 Erigeron canadensis HOM05D000027 ORTHO05D002055 3.7e-06 53.9 37 59.5
Solyc09g008090.3 Solanum lycopersicum HOM05D000027 ORTHO05D002055 3.7e-06 53.9 44 52.3
Sopen09g002900 Solanum pennellii HOM05D000027 ORTHO05D002055 3.7e-06 53.9 44 52.3
Sopen11g002040 Solanum pennellii HOM05D000027 ORTHO05D002055 3.7e-06 53.9 40 60.0
Lsat_1_v5_gn_2_106741 Lactuca sativa HOM05D000027 ORTHO05D002055 4.8e-06 53.5 37 59.5
MD12G1114000 Malus domestica HOM05D000027 ORTHO05D002055 4.8e-06 53.5 44 52.3
Nitab4.5_0003861g0030 Nicotiana tabacum HOM05D000027 ORTHO05D002055 4.8e-06 53.5 43 51.2
Prupe.6G233300 Prunus persica HOM05D000027 ORTHO05D002055 4.8e-06 53.5 38 60.5
Prupe.6G233500 Prunus persica HOM05D000027 ORTHO05D002055 4.8e-06 53.5 38 60.5
CANSAT80G0341 Cannabis sativa HOM05D000027 ORTHO05D002055 6.3e-06 53.1 34 70.6
CiPaw.04G101800 Carya illinoinensis HOM05D000027 ORTHO05D000066 6.3e-06 53.1 38 60.5
Migut.J00514 Erythranthe guttata HOM05D000027 ORTHO05D002055 6.3e-06 53.1 44 50.0
Solyc03g078500.3 Solanum lycopersicum HOM05D000027 ORTHO05D000066 6.3e-06 53.1 46 60.9
Sopen03g021390 Solanum pennellii HOM05D000027 ORTHO05D000066 6.3e-06 53.1 46 60.9
Aa31LG5G22180 Aethionema arabicum HOM05D000027 ORTHO05D002055 8.2e-06 52.8 38 55.3
CANSAT80G0120 Cannabis sativa HOM05D000027 ORTHO05D002055 8.2e-06 52.8 34 64.7
CAN.G900.44 Capsicum annuum HOM05D000027 ORTHO05D002055 8.2e-06 52.8 44 52.3
PGR042G0498 Punica granatum HOM05D000027 ORTHO05D000066 8.2e-06 52.8 44 54.5
PGR042G3495 Punica granatum HOM05D000027 ORTHO05D000066 8.2e-06 52.8 44 54.5
Thecc.01G098500 Theobroma cacao HOM05D000027 ORTHO05D000066 8.2e-06 52.8 38 63.2


User provided reference genes

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