Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g00150 Coffea canephora HOM05D007036 ORTHO05D008885 4.2e-221 771.2 423 100.0
Lj5P749T15 Lonicera japonica HOM05D007036 ORTHO05D008885 2.5e-128 463.0 383 60.3
TAR636G0074 Trochodendron aralioides HOM05D007036 ORTHO05D008885 5.1e-126 455.3 419 60.9
CAN.G106.6 Capsicum annuum HOM05D007036 ORTHO05D008885 9.7e-125 451.1 389 59.1
RcHm_v2.0_Chr4g0397671 Rosa chinensis HOM05D007036 ORTHO05D008885 9.7e-125 451.1 425 54.1
FAN17G1483 Fragaria x ananassa HOM05D007036 ORTHO05D008885 6.3e-124 448.4 425 54.4
FAN12G1049 Fragaria x ananassa HOM05D007036 ORTHO05D008885 3.1e-123 446.0 425 54.4
PGSC0003DMG400013697 Solanum tuberosum HOM05D007036 ORTHO05D008885 1.5e-122 443.7 387 58.1
Atru.chr7.958 Acer truncatum HOM05D007036 ORTHO05D008885 2.6e-122 443.0 393 55.5
Nitab4.5_0000404g0190 Nicotiana tabacum HOM05D007036 ORTHO05D008885 2.6e-122 443.0 404 57.4
MD11G1028400 Malus domestica HOM05D007036 ORTHO05D008885 7.7e-122 441.4 407 62.2
Haze_19103 Corylus avellana HOM05D007036 ORTHO05D008885 3.8e-121 439.1 401 55.6
Peaxi162Scf00954g00025 Petunia axillaris HOM05D007036 ORTHO05D008885 2.5e-120 436.4 351 62.7
Gorai.010G127600 Gossypium raimondii HOM05D007036 ORTHO05D008885 9.4e-120 434.5 405 54.3
Gohir.D06G112000 Gossypium hirsutum HOM05D007036 ORTHO05D008885 1.6e-119 433.7 405 54.3
TWI34G0744 Tripterygium wilfordii HOM05D007036 ORTHO05D008885 2.1e-119 433.3 421 52.7
Gohir.A06G110000 Gossypium hirsutum HOM05D007036 ORTHO05D008885 2.7e-119 433.0 400 54.8
vmacro22700 Vaccinium macrocarpon HOM05D007036 ORTHO05D008885 2.7e-119 433.0 384 57.3
Rhsim01G0110100 Rhododendron simsii HOM05D007036 ORTHO05D008885 8.0e-119 431.4 381 58.3
Cfa020750 Carpinus fangiana HOM05D007036 ORTHO05D008885 5.2e-118 428.7 353 60.3
Ciclev10010414m.g Citrus clementina HOM05D007036 ORTHO05D008885 5.2e-118 428.7 392 55.1
Potri.018G146900 Populus trichocarpa HOM05D007036 ORTHO05D008885 6.7e-118 428.3 391 61.1
Sabra18G0121200 Salix brachista HOM05D007036 ORTHO05D008885 6.7e-118 428.3 384 56.2
Sopen05g027850 Solanum pennellii HOM05D007036 ORTHO05D008885 8.8e-118 427.9 344 61.6
Sabra18G0128300 Salix brachista HOM05D007036 ORTHO05D008885 1.5e-117 427.2 384 56.2
Oeu011819.1 Olea europaea HOM05D007036 ORTHO05D008885 3.3e-117 426.0 388 56.2
HanXRQChr09g0261951 Helianthus annuus HOM05D007036 ORTHO05D008885 2.8e-116 422.9 387 55.0
Duzib168G0358 Durio zibethinus HOM05D007036 ORTHO05D008885 1.8e-115 420.2 388 54.6
CSS0020574 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 4.5e-114 415.6 328 62.8
Thecc.09G196200 Theobroma cacao HOM05D007036 ORTHO05D008885 3.8e-113 412.5 433 52.7
Aqoxy7G02614 Aquilegia oxysepala HOM05D007036 ORTHO05D008885 2.5e-112 409.8 383 56.1
Migut.J00838 Erythranthe guttata HOM05D007036 ORTHO05D008885 5.5e-112 408.7 374 54.5
Lj2g0012301 Lotus japonicus HOM05D007036 ORTHO05D008885 9.4e-112 407.9 386 53.4
CsaV3_2G009100 Cucumis sativus L. HOM05D007036 ORTHO05D008885 1.6e-111 407.1 352 56.5
ClCG11G011370 Citrullus lanatus HOM05D007036 ORTHO05D008885 3.6e-111 406.0 402 52.0
Lsat_1_v5_gn_6_31220 Lactuca sativa HOM05D007036 ORTHO05D008885 3.6e-111 406.0 337 58.5
MELO3C003928.2 Cucumis melo HOM05D007036 ORTHO05D008885 6.1e-111 405.2 352 56.5
Glyma.03G035400 Glycine max HOM05D007036 ORTHO05D008885 8.0e-111 404.8 355 55.5
Glyma.01G132800 Glycine max HOM05D007036 ORTHO05D008885 4.0e-110 402.5 403 49.6
CANSAT80G2763 Cannabis sativa HOM05D007036 ORTHO05D008885 7.5e-109 398.3 366 53.6
FAN07G1271 Fragaria x ananassa HOM05D007036 ORTHO05D008885 7.5e-109 398.3 407 52.1
Lalb_Chr19g0129471 Lupinus albus HOM05D007036 ORTHO05D008885 8.2e-108 394.8 333 58.9
Prupe.1G064400 Prunus persica HOM05D007036 ORTHO05D008885 8.2e-108 394.8 420 57.4
Sed0028219 Sechium edule HOM05D007036 ORTHO05D008885 8.2e-108 394.8 352 54.5
MSTRG.5959 Avicennia marina HOM05D007036 ORTHO05D008885 1.8e-107 393.7 313 62.3
arahy.Tifrunner.gnm1.ann1.1YAE55 Arachis hypogaea HOM05D007036 ORTHO05D008885 7.0e-107 391.7 338 57.7
CSS0014683 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 9.1e-107 391.3 272 69.9
Phvul.011G085400 Phaseolus vulgaris HOM05D007036 ORTHO05D008885 9.1e-107 391.3 372 52.2
QL11p008742 Quercus lobata HOM05D007036 ORTHO05D008885 1.2e-106 391.0 423 57.0
arahy.Tifrunner.gnm1.ann1.UBG147 Arachis hypogaea HOM05D007036 ORTHO05D008885 2.0e-106 390.2 338 57.7
GSVIVG01032259001 Vitis vinifera HOM05D007036 ORTHO05D008885 7.7e-106 388.3 400 60.2
Manes.01G260400 Manihot esculenta HOM05D007036 ORTHO05D008885 2.2e-105 386.7 399 58.4
FvH4_4g06090 Fragaria vesca HOM05D007036 ORTHO05D008885 8.5e-105 384.8 274 66.4
Phvul.010G069800 Phaseolus vulgaris HOM05D007036 ORTHO05D008885 1.1e-104 384.4 340 55.0
Nn5g27062 Nelumbo nucifera HOM05D007036 ORTHO05D008885 1.9e-104 383.6 427 55.7
unitig_26.g9126 Utricularia gibba HOM05D007036 ORTHO05D008885 7.2e-104 381.7 333 56.8
Ah.07g208320 Amaranthus hybridus HOM05D007036 ORTHO05D008885 1.8e-102 377.1 275 64.0
ECA236G1169 Erigeron canadensis HOM05D007036 ORTHO05D008885 3.0e-102 376.3 382 49.7
AUR62029463 Chenopodium quinoa HOM05D007036 ORTHO05D008885 1.2e-101 374.4 314 57.3
Medtr0004s0610 Medicago truncatula HOM05D007036 ORTHO05D008885 1.7e-100 370.5 333 55.0
VMungo0331G1618 Vigna mungo HOM05D007036 ORTHO05D008885 2.8e-100 369.8 339 54.0
AL5G20840 Arabidopsis lyrata HOM05D007036 ORTHO05D008885 8.3e-100 368.2 365 49.0
Sp5g14950 Schrenkiella parvula HOM05D007036 ORTHO05D008885 1.4e-99 367.5 365 49.3
AT3G42630 Arabidopsis thaliana HOM05D007036 ORTHO05D008885 2.4e-99 366.7 365 49.3
Carub.0001s3409 Capsella rubella HOM05D007036 ORTHO05D008885 1.2e-98 364.4 357 50.4
Medtr1g051205 Medicago truncatula HOM05D007036 ORTHO05D008885 2.9e-97 359.8 322 54.7
TPR.G36679 Trifolium pratense HOM05D007036 ORTHO05D008885 2.9e-97 359.8 335 53.7
SGA_v2.0_scaffold318G48469 Striga asiatica HOM05D007036 ORTHO05D008885 5.0e-97 359.0 430 46.5
Aa31LG4G9890 Aethionema arabicum HOM05D007036 ORTHO05D008885 6.6e-97 358.6 365 47.9
BcaB01g00982 Brassica carinata HOM05D007036 ORTHO05D008885 1.9e-96 357.1 349 50.4
Psat1g099640 Pisum sativum HOM05D007036 ORTHO05D008885 2.5e-96 356.7 365 50.4
BraA06t25155Z Brassica rapa HOM05D007036 ORTHO05D008885 7.2e-96 355.1 348 49.7
MBI13_g34303_MAGBIO Magnolia biondii HOM05D007036 ORTHO05D008885 7.2e-96 355.1 352 60.8
BcaC01g01887 Brassica carinata HOM05D007036 ORTHO05D008885 1.2e-95 354.4 349 49.6
A06p20770 Brassica napus HOM05D007036 ORTHO05D008885 2.1e-95 353.6 396 45.2
C03p70950 Brassica napus HOM05D007036 ORTHO05D008885 3.6e-95 352.8 349 49.3
BolC3t19373H Brassica oleracea HOM05D007036 ORTHO05D008885 6.1e-95 352.1 349 49.3
Cpa.g.sc115.26 Carica papaya HOM05D007036 ORTHO05D008885 6.1e-95 352.1 246 67.1
Carub.0016s0003 Capsella rubella HOM05D007036 ORTHO05D008885 1.4e-94 350.9 357 48.2
PGR083G2517 Punica granatum HOM05D007036 ORTHO05D008885 5.2e-94 349.0 341 50.7
ATR0626G201 Amborella trichopoda HOM05D007036 ORTHO05D008885 3.4e-93 346.3 353 59.5
CSS0018855 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 4.4e-93 345.9 328 55.2
CARHR153640 Cardamine hirsuta HOM05D007036 ORTHO05D008885 7.5e-93 345.1 422 43.4
MD13G1233100 Malus domestica HOM05D007036 ORTHO05D008885 6.3e-92 342.0 462 44.4
CiPaw.16G103900 Carya illinoinensis HOM05D007036 ORTHO05D008885 2.4e-91 340.1 428 52.3
Sc16g0002180 Simmondsia chinensis HOM05D007036 ORTHO05D008885 1.3e-89 334.3 333 52.6
VMungo0540G1720 Vigna mungo HOM05D007036 ORTHO05D008885 1.3e-89 334.3 246 63.8
DCAR_020462 Daucus carota HOM05D007036 ORTHO05D008885 4.3e-88 329.3 353 50.4
Thhalv10003041m.g Eutrema salsugineum HOM05D007036 ORTHO05D008885 2.3e-86 323.6 405 42.2
HPP92_028312 Vanilla planifolia HOM05D007036 ORTHO05D008885 2.0e-85 320.5 223 69.1
PSO170G3146 Papaver somniferum HOM05D007036 ORTHO05D008885 3.4e-85 319.7 352 55.1
Os08g0520200 Oryza sativa ssp. japonica HOM05D007036 ORTHO05D008885 4.4e-85 319.3 339 49.6
Medtr5g068170 Medicago truncatula HOM05D007036 ORTHO05D008885 2.4e-83 313.5 327 50.2
Zm00001eb035670 Zea mays HOM05D007036 ORTHO05D008885 1.7e-81 307.4 333 49.5
Ca_04679_v3 Cicer arietinum L. HOM05D007036 ORTHO05D008885 4.4e-77 292.7 218 63.8
CDE04G2486 Ceratophyllum demersum HOM05D007036 ORTHO05D008885 5.1e-73 279.3 274 52.2
Eucgr.C00064 Eucalyptus grandis HOM05D007036 ORTHO05D008885 4.3e-72 276.2 248 54.4
COL.COLO4_04221 Corchorus olitorius HOM05D007036 ORTHO05D008885 1.6e-71 274.2 363 43.8
PSO063G5690 Papaver somniferum HOM05D007036 ORTHO05D008885 2.3e-70 270.4 181 69.6
SEGI_31150 Sequoiadendron giganteum HOM05D007036 ORTHO05D008885 1.5e-69 267.7 267 50.2
CDE02G1188 Ceratophyllum demersum HOM05D007036 ORTHO05D004232 1.3e-68 264.6 205 62.0
COL.COLO4_06173 Corchorus olitorius HOM05D007036 ORTHO05D008885 2.4e-62 243.8 359 41.2
Oeu028822.1 Olea europaea HOM05D007036 ORTHO05D008885 6.6e-49 199.1 151 62.9
Lj5A765T51 Lonicera japonica HOM05D007036 ORTHO05D008885 6.4e-44 182.6 182 52.7
Mapoly0002s0203 Marchantia polymorpha HOM05D007036 ORTHO05D008885 6.4e-44 182.6 232 44.8
vmacro20769 Vaccinium macrocarpon HOM05D007036 ORTHO05D008885 4.3e-40 169.9 167 49.1
Dinv26474 Davidia involucrata HOM05D007036 ORTHO05D008885 7.6e-37 159.1 300 43.0
SMO347G0413 Selaginella moellendorffii HOM05D007036 ORTHO05D008885 1.8e-33 147.9 166 47.6
Pp3c4_3090 Physcomitrium patens HOM05D007036 ORTHO05D008885 1.6e-31 141.4 196 40.3
AagrBONN_evm.TU.Sc2ySwM_228.1431 Anthoceros agrestis HOM05D007036 ORTHO05D008885 3.8e-20 103.6 166 38.0
PGR142G1366 Punica granatum HOM05D007897 ORTHO05D010061 4.3e-16 90.1 251 29.5
Sabra06G0059400 Salix brachista HOM05D007036 ORTHO05D008885 2.4e-14 84.3 172 31.4
Eucgr.L00640 Eucalyptus grandis HOM05D007897 ORTHO05D010061 2.0e-13 81.3 250 29.6
PSO063G5193 Papaver somniferum HOM05D007897 ORTHO05D010061 4.5e-13 80.1 196 31.1
ATR0807G097 Amborella trichopoda HOM05D007897 ORTHO05D010061 5.9e-13 79.7 203 31.5
Pp3c3_31860 Physcomitrium patens HOM05D007036 ORTHO05D008885 5.9e-13 79.7 169 30.8
PSO017G4232 Papaver somniferum HOM05D007897 ORTHO05D010061 2.2e-12 77.8 200 31.5
MBI07_g06195_MAGBIO Magnolia biondii HOM05D007897 ORTHO05D010061 8.5e-12 75.9 193 31.6
TWI23G0094 Tripterygium wilfordii HOM05D007897 ORTHO05D010061 1.9e-11 74.7 202 29.2
arahy.Tifrunner.gnm1.ann1.TEUF1S Arachis hypogaea HOM05D007897 ORTHO05D010061 4.2e-11 73.6 184 31.5
arahy.Tifrunner.gnm1.ann1.T7EAWL Arachis hypogaea HOM05D007897 ORTHO05D010061 5.5e-11 73.2 184 31.5
Oeu050722.1 Olea europaea HOM05D005839 ORTHO05D009229 9.4e-11 72.4 185 29.7
Sed0009503 Sechium edule HOM05D007897 ORTHO05D010061 1.6e-10 71.6 195 29.2
Lalb_Chr03g0036571 Lupinus albus HOM05D007897 ORTHO05D010061 2.7e-10 70.9 199 29.6
VMungo1383G3288 Vigna mungo HOM05D007897 ORTHO05D010061 2.7e-10 70.9 190 28.4
Cc03_g09150 Coffea canephora HOM05D007897 ORTHO05D010061 3.6e-10 70.5 182 31.3
Manes.05G198900 Manihot esculenta HOM05D007897 ORTHO05D010061 3.6e-10 70.5 194 28.9
ECA248G1461 Erigeron canadensis HOM05D007897 ORTHO05D010061 6.1e-10 69.7 204 30.4
Phvul.001G265200 Phaseolus vulgaris HOM05D007897 ORTHO05D010061 1.0e-09 68.9 189 28.0
CSS0018651 Camellia sinensis var. sinensis HOM05D007897 ORTHO05D010061 3.9e-09 67.0 201 26.9
CSS0029276 Camellia sinensis var. sinensis HOM05D007897 ORTHO05D010061 3.9e-09 67.0 201 26.9
Oeu050723.3 Olea europaea HOM05D007897 ORTHO05D009229 3.9e-09 67.0 166 30.7
Nn8g41262 Nelumbo nucifera HOM05D007897 ORTHO05D010061 6.7e-09 66.2 200 29.5
THA.LOC104808674 Tarenaya hassleriana HOM05D007897 ORTHO05D010061 8.8e-09 65.9 170 31.2
Carub.0007s2820 Capsella rubella HOM05D007897 ORTHO05D010061 1.1e-08 65.5 184 26.6
Sabra14G0112700 Salix brachista HOM05D007897 ORTHO05D010061 1.5e-08 65.1 196 27.6
CANSAT78G0179 Cannabis sativa HOM05D007897 ORTHO05D010061 2.6e-08 64.3 154 30.5
FAN22G1341 Fragaria x ananassa HOM05D007897 ORTHO05D010061 9.7e-08 62.4 181 30.4
FAN17G1799 Fragaria x ananassa HOM05D005839 ORTHO05D005686 1.7e-07 61.6 208 28.4
Glyma.18G003400 Glycine max HOM05D007897 ORTHO05D010061 1.7e-07 61.6 156 31.4
Potri.014G149500 Populus trichocarpa HOM05D007897 ORTHO05D010061 2.2e-07 61.2 198 28.3
MD04G1021700 Malus domestica HOM05D007897 ORTHO05D010061 3.7e-07 60.5 168 28.0
FvH4_4g12861 Fragaria vesca HOM05D007897 ORTHO05D010061 6.3e-07 59.7 181 29.8
Medtr6g034745 Medicago truncatula HOM05D007036 ORTHO05D008885 6.3e-07 59.7 44 52.3
Dinv32167 Davidia involucrata HOM05D007897 ORTHO05D010061 8.2e-07 59.3 200 27.5
FAN07G0261 Fragaria x ananassa HOM05D005839 ORTHO05D005686 8.2e-07 59.3 181 30.4


User provided reference genes

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