Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc00_g00090 Coffea canephora HOM05D005675 ORTHO05D006884 3.9e-196 688.0 351 100.0
Dinv26452 Davidia involucrata HOM05D005675 ORTHO05D006884 6.0e-104 381.7 352 60.5
Dinv25398 Davidia involucrata HOM05D005675 ORTHO05D006884 4.0e-100 369.0 357 59.1
CSS0039496 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 3.0e-95 352.8 359 54.6
Actinidia02470 Actinidia chinensis HOM05D005675 ORTHO05D006884 3.6e-93 345.9 350 53.4
TWI63G1173 Tripterygium wilfordii HOM05D005675 ORTHO05D006884 2.0e-91 340.1 362 52.2
CiPaw.16G104100 Carya illinoinensis HOM05D005675 ORTHO05D006884 1.7e-90 337.0 356 53.4
Hma1.2p1_0661F.1_g198030 Hydrangea macrophylla HOM05D005675 ORTHO05D006884 8.4e-90 334.7 363 54.0
MD07G1305000 Malus domestica HOM05D005675 ORTHO05D006884 1.6e-88 330.5 348 52.9
GSVIVG01000235001 Vitis vinifera HOM05D005675 ORTHO05D006884 1.0e-87 327.8 361 50.7
QL11p008661 Quercus lobata HOM05D005675 ORTHO05D006884 1.3e-87 327.4 362 53.0
DCAR_009047 Daucus carota HOM05D005675 ORTHO05D006884 6.7e-87 325.1 344 53.8
Potri.006G078700 Populus trichocarpa HOM05D005675 ORTHO05D006884 6.7e-87 325.1 356 51.7
Solyc07g017290.4 Solanum lycopersicum HOM05D005675 ORTHO05D006884 8.7e-87 324.7 348 53.7
Manes.01G177400 Manihot esculenta HOM05D005675 ORTHO05D006884 1.5e-86 323.9 359 50.1
Sopen07g006010 Solanum pennellii HOM05D005675 ORTHO05D006884 1.9e-86 323.6 348 53.7
TAR626G0076 Trochodendron aralioides HOM05D005675 ORTHO05D006884 4.3e-86 322.4 360 53.6
Prupe.4G276600 Prunus persica HOM05D005675 ORTHO05D006884 7.4e-86 321.6 346 53.5
Cfa020754 Carpinus fangiana HOM05D005675 ORTHO05D006884 1.3e-85 320.9 356 51.7
RcHm_v2.0_Chr2g0128761 Rosa chinensis HOM05D005675 ORTHO05D006884 2.1e-85 320.1 347 51.9
CAN.G1751.7 Capsicum annuum HOM05D005675 ORTHO05D006884 2.8e-85 319.7 358 51.4
MSTRG.26518 Avicennia marina HOM05D005675 ORTHO05D006884 3.7e-85 319.3 356 52.0
Duzib168G1643 Durio zibethinus HOM05D005675 ORTHO05D006884 4.8e-85 318.9 349 51.3
Solyc12g017470.2 Solanum lycopersicum HOM05D005675 ORTHO05D006884 6.2e-85 318.5 363 51.2
Nitab4.5_0014696g0010 Nicotiana tabacum HOM05D005675 ORTHO05D006884 8.1e-85 318.2 356 52.8
PGR044G2364 Punica granatum HOM05D005675 ORTHO05D006884 8.1e-85 318.2 343 50.1
vmacro20762 Vaccinium macrocarpon HOM05D005675 ORTHO05D006884 8.1e-85 318.2 398 48.0
TWI34G2031 Tripterygium wilfordii HOM05D005675 ORTHO05D006884 1.4e-84 317.4 353 51.8
Sabra06G0059600 Salix brachista HOM05D005675 ORTHO05D006884 1.8e-84 317.0 353 50.4
Ciclev10008766m.g Citrus clementina HOM05D005675 ORTHO05D006884 5.3e-84 315.5 350 50.3
COL.COLO4_23415 Corchorus olitorius HOM05D005675 ORTHO05D006884 4.5e-83 312.4 354 50.8
Cpa.g.sc115.21 Carica papaya HOM05D005675 ORTHO05D006884 7.6e-83 311.6 351 50.7
PSO063G5127 Papaver somniferum HOM05D005675 ORTHO05D006884 1.4e-81 307.4 356 50.0
SalBow5G0607 Salvia bowleyana HOM05D005675 ORTHO05D006884 5.5e-81 305.4 362 50.3
FAN14G0585 Fragaria x ananassa HOM05D005675 ORTHO05D006884 9.3e-81 304.7 348 50.9
FAN09G4269 Fragaria x ananassa HOM05D005675 ORTHO05D006884 1.6e-80 303.9 347 51.6
PSO170G1351 Papaver somniferum HOM05D005675 ORTHO05D006884 2.7e-80 303.1 355 51.5
Eucgr.C02170 Eucalyptus grandis HOM05D005675 ORTHO05D006884 4.6e-80 302.4 342 49.4
Oeu036952.2 Olea europaea HOM05D005675 ORTHO05D006884 7.9e-80 301.6 459 41.8
Gohir.D08G027200 Gossypium hirsutum HOM05D005675 ORTHO05D006884 3.0e-79 299.7 348 49.4
Gorai.004G024100 Gossypium raimondii HOM05D005675 ORTHO05D006884 1.5e-78 297.4 348 49.1
Thecc.09G196800 Theobroma cacao HOM05D005675 ORTHO05D006884 3.3e-78 296.2 334 50.0
Gohir.A08G016800 Gossypium hirsutum HOM05D005675 ORTHO05D006884 4.3e-78 295.8 348 49.4
CANSAT80G1422 Cannabis sativa HOM05D005675 ORTHO05D006884 1.3e-77 294.3 348 47.4
SGA_v2.0_scaffold21G09606 Striga asiatica HOM05D005675 ORTHO05D006884 1.1e-76 291.2 350 48.3
SGA_v2.0_scaffold339G49254 Striga asiatica HOM05D005675 ORTHO05D006884 1.1e-76 291.2 352 48.9
Ca_25634_v3 Cicer arietinum L. HOM05D005675 ORTHO05D001317 9.0e-76 288.1 349 47.6
FAN05G3686 Fragaria x ananassa HOM05D005675 ORTHO05D006884 1.2e-75 287.7 363 47.9
Migut.L01917 Erythranthe guttata HOM05D005675 ORTHO05D006884 5.8e-75 285.4 352 47.7
Lj1g0011117 Lotus japonicus HOM05D005675 ORTHO05D006884 2.2e-74 283.5 349 46.1
TPR.G21343 Trifolium pratense HOM05D005675 ORTHO05D006884 6.5e-74 282.0 344 48.0
ClCG05G011260 Citrullus lanatus HOM05D005675 ORTHO05D006884 2.5e-73 280.0 354 48.0
Glyma.01G001700 Glycine max HOM05D005675 ORTHO05D006884 9.3e-73 278.1 351 46.4
Rhsim01G0109900 Rhododendron simsii HOM05D005675 ORTHO05D006884 9.3e-73 278.1 319 49.8
Medtr6g093070 Medicago truncatula HOM05D005675 ORTHO05D006884 7.9e-72 275.0 345 44.9
Lalb_Chr14g0362531 Lupinus albus HOM05D005675 ORTHO05D006884 1.0e-71 274.6 347 45.8
ECA240G2624 Erigeron canadensis HOM05D005675 ORTHO05D006884 3.0e-71 273.1 343 47.5
Sed0020807 Sechium edule HOM05D005675 ORTHO05D006884 9.7e-70 268.1 351 46.4
THA.LOC104815311 Tarenaya hassleriana HOM05D005675 ORTHO05D006884 1.6e-69 267.3 356 44.9
VMungo0464G1932 Vigna mungo HOM05D005675 ORTHO05D001317 3.7e-69 266.2 349 45.0
Lsat_1_v5_gn_7_57460 Lactuca sativa HOM05D005675 ORTHO05D006884 6.3e-69 265.4 329 48.6
BraA03t12828Z Brassica rapa HOM05D005675 ORTHO05D006884 1.4e-68 264.2 346 44.8
Phvul.004G178000 Phaseolus vulgaris HOM05D005675 ORTHO05D006884 1.4e-68 264.2 350 44.3
A03p36640 Brassica napus HOM05D005675 ORTHO05D006884 1.8e-68 263.8 346 43.9
BolC5t34404H Brassica oleracea HOM05D005675 ORTHO05D006884 2.4e-68 263.5 336 45.8
C05p57470 Brassica napus HOM05D005675 ORTHO05D006884 3.1e-68 263.1 336 45.5
CAN.G1751.9 Capsicum annuum HOM05D005675 ORTHO05D006884 1.2e-67 261.2 317 48.9
BcaC01g04171 Brassica carinata HOM05D005675 ORTHO05D006884 1.5e-67 260.8 348 44.5
HanXRQChr03g0067281 Helianthus annuus HOM05D005675 ORTHO05D006884 5.9e-67 258.8 341 46.9
Carub.0003s0981 Capsella rubella HOM05D005675 ORTHO05D006884 6.5e-66 255.4 341 43.4
CAN.G309.91 Capsicum annuum HOM05D005675 ORTHO05D006884 6.5e-66 255.4 284 51.8
MBI13_g31573_MAGBIO Magnolia biondii HOM05D005675 ORTHO05D006884 8.5e-66 255.0 393 42.7
PGSC0003DMG400006457 Solanum tuberosum HOM05D005675 ORTHO05D006884 8.5e-66 255.0 322 48.1
BcaC05g29447 Brassica carinata HOM05D005675 ORTHO05D006884 1.1e-65 254.6 346 44.5
arahy.Tifrunner.gnm1.ann1.RL68NL Arachis hypogaea HOM05D005675 ORTHO05D006884 1.4e-65 254.2 364 42.3
BraA05t22649Z Brassica rapa HOM05D005675 ORTHO05D006884 1.4e-65 254.2 341 44.3
A05p38580 Brassica napus HOM05D005675 ORTHO05D006884 3.2e-65 253.1 336 45.2
CsaV3_3G021160 Cucumis sativus L. HOM05D005675 ORTHO05D006884 3.2e-65 253.1 347 44.7
AL3G22010 Arabidopsis lyrata HOM05D005675 ORTHO05D006884 7.2e-65 251.9 341 44.0
AL3G45830 Arabidopsis lyrata HOM05D005675 ORTHO05D006884 9.4e-65 251.5 349 43.6
AT3G10572 Arabidopsis thaliana HOM05D005675 ORTHO05D006884 2.3e-63 246.9 344 43.3
MELO3C020255.2 Cucumis melo HOM05D005675 ORTHO05D006884 5.1e-63 245.7 333 44.1
BolC3t16698H Brassica oleracea HOM05D005675 ORTHO05D006884 1.1e-62 244.6 345 43.8
Aa31LG3G3440 Aethionema arabicum HOM05D005675 ORTHO05D006884 1.5e-62 244.2 347 41.8
Sp3g08870 Schrenkiella parvula HOM05D005675 ORTHO05D006884 1.5e-62 244.2 338 43.2
ATR0626G294 Amborella trichopoda HOM05D005675 ORTHO05D006884 2.2e-61 240.4 364 42.9
Atru.chr2.1389 Acer truncatum HOM05D005675 ORTHO05D006884 3.7e-61 239.6 341 45.5
Prupe.3G126100 Prunus persica HOM05D005675 ORTHO05D006884 6.3e-61 238.8 348 44.8
Haze_19098 Corylus avellana HOM05D005675 ORTHO05D006884 9.1e-60 235.0 382 40.8
Thhalv10021093m.g Eutrema salsugineum HOM05D005675 ORTHO05D006884 1.5e-59 234.2 341 42.5
AUR62002223 Chenopodium quinoa HOM05D005675 ORTHO05D006884 2.0e-59 233.8 346 41.6
CAN.G486.3 Capsicum annuum HOM05D002496 ORTHO05D002787 5.9e-59 232.3 324 45.7
CSS0020115 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 1.4e-57 227.6 206 59.2
SHI13641 Sapria himalayana HOM05D005675 ORTHO05D006884 1.9e-57 227.3 376 40.7
Ah.06g185690 Amaranthus hybridus HOM05D005675 ORTHO05D006884 3.2e-57 226.5 342 40.9
AUR62015436 Chenopodium quinoa HOM05D005675 ORTHO05D006884 7.9e-56 221.9 337 40.9
HPP92_010804 Vanilla planifolia HOM05D005675 ORTHO05D006884 2.3e-55 220.3 346 39.9
Hund11839 Selenicereus undatus HOM05D005675 ORTHO05D006884 2.0e-54 217.2 340 41.5
Aqoxy6G03025 Aquilegia oxysepala HOM05D005675 ORTHO05D006884 7.4e-54 215.3 311 44.1
FvH4_6g26940 Fragaria vesca HOM05D005675 ORTHO05D006884 1.7e-53 214.2 251 47.4
Sopen12g008260 Solanum pennellii HOM05D005675 ORTHO05D006884 4.1e-52 209.5 214 53.7
TAR383G0085 Trochodendron aralioides HOM05D005675 ORTHO05D006884 2.2e-50 203.8 275 47.6
Os06g0702800 Oryza sativa ssp. japonica HOM05D005675 ORTHO05D006884 5.0e-50 202.6 359 35.7
CDE05G2328 Ceratophyllum demersum HOM05D005675 ORTHO05D006884 2.1e-48 197.2 357 37.0
Nitab4.5_0000899g0040 Nicotiana tabacum HOM05D005675 ORTHO05D006884 1.0e-47 194.9 195 56.4
EL10Ac3g05860 Beta vulgaris HOM05D005675 ORTHO05D006884 5.7e-46 189.1 309 40.5
FAN02G0472 Fragaria x ananassa HOM05D005675 ORTHO05D006884 5.7e-46 189.1 272 43.0
Sc26g0001420 Simmondsia chinensis HOM05D005675 ORTHO05D006884 5.7e-46 189.1 313 38.7
Zm00001eb227160 Zea mays HOM05D005675 ORTHO05D006884 1.8e-44 184.1 315 35.9
Glyma.07G130600 Glycine max HOM05D005675 ORTHO05D006884 5.3e-44 182.6 270 43.0
Lju432C7G1 Lonicera japonica HOM05D005675 ORTHO05D006884 1.2e-43 181.4 346 39.0
C03p44280 Brassica napus HOM05D005675 ORTHO05D006884 2.6e-43 180.3 346 36.1
Nn8g41130 Nelumbo nucifera HOM05D005675 ORTHO05D006884 2.9e-42 176.8 189 53.4
CARHR085110 Cardamine hirsuta HOM05D005675 ORTHO05D006884 1.8e-36 157.5 247 38.1
PSO170G0789 Papaver somniferum HOM05D005675 ORTHO05D006884 2.0e-35 154.1 263 40.7
PSO170G4889 Papaver somniferum HOM05D005675 ORTHO05D006884 2.0e-35 154.1 263 40.7
PSO170G5374 Papaver somniferum HOM05D005675 ORTHO05D006884 2.0e-35 154.1 263 40.7
unitig_578.g16399 Utricularia gibba HOM05D005675 ORTHO05D006884 2.7e-35 153.7 214 48.6
Peaxi162Scf01527g00006 Petunia axillaris HOM05D005675 ORTHO05D006884 1.9e-33 147.5 216 44.9
SEGI_03452 Sequoiadendron giganteum HOM05D005675 ORTHO05D006884 7.2e-33 145.6 290 34.1
PSO431G0001 Papaver somniferum HOM05D005675 ORTHO05D006884 4.7e-32 142.9 218 43.1
PSO170G3345 Papaver somniferum HOM05D005675 ORTHO05D006884 1.8e-31 141.0 251 39.8
PGSC0003DMG400009563 Solanum tuberosum HOM05D005675 ORTHO05D006884 3.0e-31 140.2 172 47.1
Haze_19095 Corylus avellana HOM05D005675 ORTHO05D006884 1.4e-28 131.3 153 50.3
CAN.G2070.2 Capsicum annuum HOM05D005675 ORTHO05D006884 2.5e-25 120.6 168 45.2
CAN.G1703.6 Capsicum annuum HOM05D002496 ORTHO05D002787 8.0e-24 115.5 121 52.9
Pp3c9_5270 Physcomitrium patens HOM05D005675 ORTHO05D006884 2.0e-22 110.9 380 27.1
unitig_578.g16398 Utricularia gibba HOM05D005675 ORTHO05D006884 1.8e-20 104.4 105 47.6
Mapoly0082s0059 Marchantia polymorpha HOM05D005675 ORTHO05D006884 2.9e-18 97.1 401 24.2
Sopen12g008240 Solanum pennellii HOM05D005675 ORTHO05D006884 9.5e-17 92.0 106 50.0
CARHR085100 Cardamine hirsuta HOM05D005675 ORTHO05D006884 6.2e-16 89.4 95 54.7
Gohir.D08G027550 Gossypium hirsutum HOM05D005675 ORTHO05D006884 1.5e-14 84.7 66 62.1
Gorai.004G024600 Gossypium raimondii HOM05D005675 ORTHO05D006884 4.9e-13 79.7 66 59.1
SMO367G0141 Selaginella moellendorffii HOM05D005675 ORTHO05D006884 3.5e-11 73.6 222 25.7
BcaB04g18591 Brassica carinata HOM05D000144 ORTHO05D006884 1.3e-10 71.6 150 35.3
CSS0044900 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 1.3e-10 71.6 77 50.6
Sopen00g008260 Solanum pennellii HOM05D005675 ORTHO05D006884 1.5e-09 68.2 41 80.5
AagrBONN_evm.TU.Sc2ySwM_344.4450 Anthoceros agrestis HOM05D034800 ORTHO05D006884 2.1e-08 64.3 379 21.9
SEGI_30577 Sequoiadendron giganteum HOM05D005675 ORTHO05D006884 4.4e-06 56.6 98 35.7
Ah.13g066730 Amaranthus hybridus HOM05D014553 ORTHO05D018255 7.5e-06 55.8 42 61.9


User provided reference genes

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