Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0347s0001 Capsella rubella HOM05D003774 ORTHO05D010174 2.6e-153 545.4 294 100.0
AL1G50100 Arabidopsis lyrata HOM05D003774 ORTHO05D010174 5.0e-136 488.0 294 89.5
Sp1g30100 Schrenkiella parvula HOM05D003774 ORTHO05D010174 1.5e-127 459.9 298 82.6
Thhalv10001819m.g Eutrema salsugineum HOM05D003774 ORTHO05D010174 2.3e-125 452.6 297 82.2
A09p31890 Brassica napus HOM05D003774 ORTHO05D010174 3.0e-125 452.2 296 82.1
C06p11060 Brassica napus HOM05D003774 ORTHO05D010174 3.7e-123 445.3 296 81.1
BcaC08g43723 Brassica carinata HOM05D003774 ORTHO05D010174 6.3e-123 444.5 296 81.1
BolC6t36225H Brassica oleracea HOM05D003774 ORTHO05D010174 8.2e-123 444.1 296 81.1
BcaB07g33098 Brassica carinata HOM05D003774 ORTHO05D010174 1.3e-120 436.8 297 80.5
BraA09t38729Z Brassica rapa HOM05D003774 ORTHO05D010174 6.5e-120 434.5 275 83.6
AT1G35340 Arabidopsis thaliana HOM05D003774 ORTHO05D010174 5.4e-98 361.7 211 90.5
THA.LOC104816539 Tarenaya hassleriana HOM05D003774 ORTHO05D010174 3.9e-96 355.5 316 62.3
Thecc.08G192700 Theobroma cacao HOM05D003774 ORTHO05D010174 3.9e-88 328.9 264 68.6
Aa31LG6G8720 Aethionema arabicum HOM05D003774 ORTHO05D009174 1.9e-87 326.6 262 67.6
Cfa012970 Carpinus fangiana HOM05D003774 ORTHO05D010174 2.1e-86 323.2 262 64.5
RcHm_v2.0_Chr7g0227131 Rosa chinensis HOM05D003774 ORTHO05D010174 8.1e-86 321.2 302 59.9
Manes.18G106000 Manihot esculenta HOM05D003774 ORTHO05D010174 4.4e-84 315.5 260 64.6
FAN08G2588 Fragaria x ananassa HOM05D003774 ORTHO05D010174 9.8e-84 314.3 294 58.8
CANSAT25G1591 Cannabis sativa HOM05D003774 ORTHO05D010174 1.3e-83 313.9 260 62.7
CiPaw.07G235600 Carya illinoinensis HOM05D003774 ORTHO05D010174 2.2e-83 313.2 280 61.4
FvH4_5g31600 Fragaria vesca HOM05D003774 ORTHO05D010174 3.7e-83 312.4 293 59.7
Prupe.1G555700 Prunus persica HOM05D003774 ORTHO05D010174 3.7e-83 312.4 298 58.4
Eucgr.F02989 Eucalyptus grandis HOM05D003774 ORTHO05D010174 1.4e-82 310.5 265 64.5
PGR042G3332 Punica granatum HOM05D003774 ORTHO05D010174 1.6e-81 307.0 258 62.0
FAN07G1602 Fragaria x ananassa HOM05D003774 ORTHO05D010174 3.5e-81 305.8 294 57.8
Ciclev10003535m.g Citrus clementina HOM05D003774 ORTHO05D010174 7.8e-81 304.7 253 64.4
MD14G1036300 Malus domestica HOM05D003774 ORTHO05D010174 1.3e-80 303.9 247 65.6
PGSC0003DMG400026729 Solanum tuberosum HOM05D003774 ORTHO05D010174 5.1e-80 302.0 293 57.3
Sabra13G0091200 Salix brachista HOM05D003774 ORTHO05D009174 3.3e-79 299.3 273 61.2
TWI14G1031 Tripterygium wilfordii HOM05D003774 ORTHO05D010174 7.3e-79 298.1 233 67.8
Atru.chr13.2372 Acer truncatum HOM05D003774 ORTHO05D010174 9.5e-79 297.7 250 62.8
CAN.G1483.1 Capsicum annuum HOM05D003774 ORTHO05D010174 2.1e-78 296.6 257 60.7
CsaV3_5G040540 Cucumis sativus L. HOM05D003774 ORTHO05D010174 2.1e-78 296.6 256 62.1
Nitab4.5_0001463g0060 Nicotiana tabacum HOM05D003774 ORTHO05D010174 2.1e-78 296.6 283 57.6
Peaxi162Scf00688g00424 Petunia axillaris HOM05D003774 ORTHO05D010174 2.1e-78 296.6 258 60.9
Nitab4.5_0005616g0030 Nicotiana tabacum HOM05D003774 ORTHO05D010174 2.8e-78 296.2 257 61.1
Solyc11g027830.2 Solanum lycopersicum HOM05D003774 ORTHO05D010174 4.7e-78 295.4 259 61.4
Migut.C01324 Erythranthe guttata HOM05D003774 ORTHO05D010174 5.2e-77 292.0 299 56.2
DCAR_017444 Daucus carota HOM05D003774 ORTHO05D010174 8.9e-77 291.2 248 61.7
HanXRQChr02g0036571 Helianthus annuus HOM05D003774 ORTHO05D010174 2.0e-76 290.0 265 57.4
Sopen11g022590 Solanum pennellii HOM05D003774 ORTHO05D010174 3.4e-76 289.3 261 60.2
Haze_21314 Corylus avellana HOM05D003774 ORTHO05D010174 5.8e-76 288.5 257 61.1
PSO170G3079 Papaver somniferum HOM05D003774 ORTHO05D010174 9.9e-76 287.7 246 62.2
Cc00_g20990 Coffea canephora HOM05D003774 ORTHO05D010174 1.3e-75 287.3 243 63.4
PSO782G0406 Papaver somniferum HOM05D003774 ORTHO05D010174 3.8e-75 285.8 246 61.8
Lsat_1_v5_gn_1_25800 Lactuca sativa HOM05D003774 ORTHO05D010174 1.4e-74 283.9 247 59.5
MBI03_g45112_MAGBIO Magnolia biondii HOM05D003774 ORTHO05D010174 2.7e-73 279.6 287 57.1
Actinidia29409 Actinidia chinensis HOM05D003774 ORTHO05D010174 3.5e-73 279.3 247 61.5
ClCG08G000190 Citrullus lanatus HOM05D003774 ORTHO05D010174 6.9e-69 265.0 303 52.1
COL.COLO4_24648 Corchorus olitorius HOM05D003774 ORTHO05D010174 4.4e-68 262.3 235 60.9
Cpa.g.sc66.3 Carica papaya HOM05D003774 ORTHO05D010174 7.6e-68 261.5 210 65.7
FAN18G3876 Fragaria x ananassa HOM05D003402 ORTHO05D003939 9.9e-68 261.2 292 52.7
GSVIVG01026088001 Vitis vinifera HOM05D003774 ORTHO05D010174 1.2e-65 254.2 251 56.6
Potri.013G105500 Populus trichocarpa HOM05D003774 ORTHO05D010174 6.6e-64 248.4 215 62.3
CARHR034170 Cardamine hirsuta HOM05D003774 ORTHO05D010174 8.7e-64 248.1 147 87.8
MBI03_g46804_MAGBIO Magnolia biondii HOM05D003774 ORTHO05D010174 2.5e-63 246.5 250 56.4
MD04G1056900 Malus domestica HOM05D003774 ORTHO05D010174 7.3e-63 245.0 212 61.8
ECA247G3883 Erigeron canadensis HOM05D003774 ORTHO05D009174 2.8e-62 243.0 210 59.0
SEGI_18058 Sequoiadendron giganteum HOM05D003774 ORTHO05D010174 1.1e-61 241.1 271 49.1
Zm00001eb169160 Zea mays HOM05D003774 ORTHO05D010174 1.2e-57 227.6 244 50.8
Oeu013897.1 Olea europaea HOM05D003774 ORTHO05D010174 1.6e-57 227.3 209 58.9
Pp3c18_9200 Physcomitrium patens HOM05D003774 ORTHO05D010174 2.0e-52 210.3 245 46.1
Mapoly0085s0045 Marchantia polymorpha HOM05D003774 ORTHO05D010174 4.8e-46 189.1 269 39.0
Dinv41759 Davidia involucrata HOM05D003774 ORTHO05D010174 5.3e-45 185.7 156 60.3
MELO3C022227.2 Cucumis melo HOM05D003774 ORTHO05D010174 6.9e-45 185.3 256 48.0
Rhsim11G0052800 Rhododendron simsii HOM05D003774 ORTHO05D000166 1.1e-31 141.4 102 70.6
TAR628G1250 Trochodendron aralioides HOM05D003774 ORTHO05D010174 3.3e-31 139.8 100 72.0
MSTRG.1569 Avicennia marina HOM05D003774 ORTHO05D010174 1.1e-29 134.8 125 58.4
AagrBONN_evm.TU.Sc2ySwM_340.403 Anthoceros agrestis HOM05D000737 ORTHO05D000581 1.7e-27 127.5 233 34.3
Lj7A284G37 Lonicera japonica HOM05D003774 ORTHO05D010174 2.9e-27 126.7 129 54.3
FvH4_5g26640 Fragaria vesca HOM05D003774 ORTHO05D010174 8.8e-24 115.2 87 65.5
Lj7A284T38 Lonicera japonica HOM05D003774 ORTHO05D010174 6.5e-19 99.0 101 52.5
Os11g0219000 Oryza sativa ssp. japonica HOM05D003774 ORTHO05D010174 3.2e-18 96.7 76 63.2
Cre16.g670500 Chlamydomonas reinhardtii HOM05D003774 ORTHO05D010174 1.1e-10 71.6 330 23.6
MD15G1405700 Malus domestica HOM05D003774 ORTHO05D010174 4.2e-10 69.7 147 37.4
MCO03G373 Micromonas commoda HOM05D003774 ORTHO05D010174 8.0e-09 65.5 292 25.7


User provided reference genes

Program Settings