Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0333s0001 Capsella rubella HOM05D003660 ORTHO05D003415 3.6e-30 134.4 76 100.0
Carub.0005s1000 Capsella rubella HOM05D003660 ORTHO05D003415 8.0e-30 133.3 76 98.7
AT3G44280 Arabidopsis thaliana HOM05D003660 ORTHO05D003415 1.5e-28 129.0 75 96.0
AL5G22410 Arabidopsis lyrata HOM05D003660 ORTHO05D003415 2.9e-27 124.8 75 96.0
Thhalv10010953m.g Eutrema salsugineum HOM05D003660 ORTHO05D003415 4.9e-27 124.0 75 93.3
A06p22070 Brassica napus HOM05D003660 ORTHO05D003415 2.4e-26 121.7 75 88.0
C03p69380 Brassica napus HOM05D003660 ORTHO05D003415 7.0e-26 120.2 75 86.7
CARHR104590 Cardamine hirsuta HOM05D003660 ORTHO05D003415 2.7e-25 118.2 76 90.8
BraA06t25297Z Brassica rapa HOM05D003660 ORTHO05D003415 1.0e-24 116.3 77 84.4
Aa31LG1G13260 Aethionema arabicum HOM05D003660 ORTHO05D003415 6.6e-24 113.6 76 82.9
Sp6g22960 Schrenkiella parvula HOM05D003660 ORTHO05D003415 6.6e-24 113.6 75 84.0
BcaC01g06594 Brassica carinata HOM05D003660 ORTHO05D003415 8.6e-24 113.2 75 84.0
C03p12270 Brassica napus HOM05D003660 ORTHO05D003415 8.6e-24 113.2 75 84.0
AL6G33280 Arabidopsis lyrata HOM05D003660 ORTHO05D003415 1.1e-23 112.8 76 82.9
AT5G22280 Arabidopsis thaliana HOM05D003660 ORTHO05D003415 1.1e-23 112.8 76 82.9
Aa31LG4G13780 Aethionema arabicum HOM05D003660 ORTHO05D003415 1.9e-23 112.1 75 84.0
Carub.0006s2002 Capsella rubella HOM05D003660 ORTHO05D003415 1.9e-23 112.1 76 82.9
A03p10660 Brassica napus HOM05D003660 ORTHO05D003415 3.3e-23 111.3 75 82.7
BraA03t10378Z Brassica rapa HOM05D003660 ORTHO05D003415 3.3e-23 111.3 75 82.7
BcaB01g04718 Brassica carinata HOM05D003660 ORTHO05D003415 4.3e-23 110.9 75 82.7
BNapus_Darmor_BZH_scaffold_38p00770 Brassica napus HOM05D003660 ORTHO05D003415 7.3e-23 110.2 75 80.0
Thhalv10015076m.g Eutrema salsugineum HOM05D003660 ORTHO05D003415 9.5e-23 109.8 75 80.0
BcaB05g22739 Brassica carinata HOM05D003660 ORTHO05D003415 2.1e-22 108.6 75 78.7
BcaC01g02028 Brassica carinata HOM05D003660 ORTHO05D003415 4.7e-22 107.5 97 67.0
BcaC03g13871 Brassica carinata HOM05D003660 ORTHO05D003415 4.7e-22 107.5 75 78.7
BolC3t19199H Brassica oleracea HOM05D003660 ORTHO05D003415 4.7e-22 107.5 97 67.0
THA.LOC104810930 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 4.7e-22 107.5 76 82.9
BolC2t07146H Brassica oleracea HOM05D003660 ORTHO05D003415 8.1e-22 106.7 75 77.3
BcaB08g36812 Brassica carinata HOM05D003660 ORTHO05D003415 3.1e-21 104.8 75 74.7
C02p10760 Brassica napus HOM05D003660 ORTHO05D003415 3.1e-21 104.8 75 76.0
THA.LOC104799557 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 2.6e-20 101.7 76 80.3
Duzib170G1097 Durio zibethinus HOM05D000010 ORTHO05D005236 1.3e-19 99.4 76 73.7
BcaB05g22254 Brassica carinata HOM05D003660 ORTHO05D003415 4.9e-19 97.4 69 76.8
Prupe.6G138900 Prunus persica HOM05D003660 ORTHO05D003415 4.9e-19 97.4 76 72.4
Gorai.006G113800 Gossypium raimondii HOM05D003660 ORTHO05D003415 8.3e-19 96.7 76 73.7
Gohir.A09G097300 Gossypium hirsutum HOM05D003660 ORTHO05D003415 1.4e-18 95.9 76 72.4
Thecc.09G277300 Theobroma cacao HOM05D003660 ORTHO05D003415 1.4e-18 95.9 76 73.7
Rhsim01G0202600 Rhododendron simsii HOM05D003660 ORTHO05D003415 2.4e-18 95.1 76 71.1
Atru.chr3.3157 Acer truncatum HOM05D003660 ORTHO05D003415 3.2e-18 94.7 76 69.7
Actinidia35475 Actinidia chinensis HOM05D003660 ORTHO05D003415 3.2e-18 94.7 76 71.1
Gohir.D09G097100 Gossypium hirsutum HOM05D003660 ORTHO05D003415 3.2e-18 94.7 76 72.4
vmacro14331 Vaccinium macrocarpon HOM05D003660 ORTHO05D003415 3.2e-18 94.7 76 71.1
Ciclev10029624m.g Citrus clementina HOM05D003660 ORTHO05D003415 4.1e-18 94.4 76 72.4
Nn6g34777 Nelumbo nucifera HOM05D003660 ORTHO05D003415 4.1e-18 94.4 76 71.1
Hund20939 Selenicereus undatus HOM05D003660 ORTHO05D003415 5.4e-18 94.0 76 71.1
Cpa.g.sc195.36 Carica papaya HOM05D003660 ORTHO05D003415 9.2e-18 93.2 76 71.1
Nitab4.5_0001135g0080 Nicotiana tabacum HOM05D003660 ORTHO05D003415 1.2e-17 92.8 76 69.7
Solyc11g068760.2 Solanum lycopersicum HOM05D003660 ORTHO05D003415 1.2e-17 92.8 76 69.7
Sopen11g027470 Solanum pennellii HOM05D003660 ORTHO05D003415 1.2e-17 92.8 76 69.7
COL.COLO4_04567 Corchorus olitorius HOM05D003660 ORTHO05D003415 1.6e-17 92.4 76 69.7
Peaxi162Scf00224g00520 Petunia axillaris HOM05D003660 ORTHO05D003415 1.6e-17 92.4 76 69.7
SalBow3G1900 Salvia bowleyana HOM05D003660 ORTHO05D003415 2.1e-17 92.0 77 68.8
CSS0013947 Camellia sinensis var. sinensis HOM05D003660 ORTHO05D003415 2.7e-17 91.7 76 69.7
CiPaw.14G096800 Carya illinoinensis HOM05D003660 ORTHO05D003415 1.0e-16 89.7 77 70.1
Gorai.009G083400 Gossypium raimondii HOM05D003660 ORTHO05D003415 1.0e-16 89.7 75 68.0
MD11G1171800 Malus domestica HOM05D003660 ORTHO05D003415 1.3e-16 89.4 76 68.4
Hund18786 Selenicereus undatus HOM05D003660 ORTHO05D003415 1.3e-16 89.4 76 68.4
BolC3t13700H Brassica oleracea HOM05D003660 ORTHO05D003415 1.7e-16 89.0 127 49.6
MELO3C014510.2 Cucumis melo HOM05D000010 ORTHO05D005236 1.7e-16 89.0 77 68.8
Manes.04G000300 Manihot esculenta HOM05D003660 ORTHO05D003415 1.7e-16 89.0 76 68.4
ClCG02G022340 Citrullus lanatus HOM05D003660 ORTHO05D003415 2.3e-16 88.6 77 68.8
TAR623G0029 Trochodendron aralioides HOM05D003660 ORTHO05D003415 2.3e-16 88.6 76 67.1
Gohir.A05G078900 Gossypium hirsutum HOM05D003660 ORTHO05D003415 3.0e-16 88.2 75 66.7
Lj3g0024971 Lotus japonicus HOM05D003660 ORTHO05D003415 3.0e-16 88.2 77 67.5
PSO339G2942 Papaver somniferum HOM05D003660 ORTHO05D003415 3.0e-16 88.2 76 67.1
PSO801G0667 Papaver somniferum HOM05D003660 ORTHO05D003415 3.0e-16 88.2 76 67.1
MSTRG.17695 Avicennia marina HOM05D003660 ORTHO05D003415 3.9e-16 87.8 77 66.2
CsaV3_6G038470 Cucumis sativus L. HOM05D003660 ORTHO05D003415 5.1e-16 87.4 77 67.5
Cc01_g08660 Coffea canephora HOM05D003660 ORTHO05D003415 6.6e-16 87.0 77 66.2
Hma1.2p1_1178F.1_g264370 Hydrangea macrophylla HOM05D003660 ORTHO05D003415 6.6e-16 87.0 76 67.1
Hma1.2p1_2789F.1_g328565 Hydrangea macrophylla HOM05D003660 ORTHO05D003415 6.6e-16 87.0 76 67.1
MD03G1151200 Malus domestica HOM05D003660 ORTHO05D003415 6.6e-16 87.0 76 67.1
Medtr2g086880 Medicago truncatula HOM05D000010 ORTHO05D005236 8.6e-16 86.7 77 64.9
Potri.004G200200 Populus trichocarpa HOM05D003660 ORTHO05D003415 8.6e-16 86.7 76 67.1
VMungo1080G1056 Vigna mungo HOM05D003660 ORTHO05D003415 8.6e-16 86.7 77 67.5
Sc12g0004740 Simmondsia chinensis HOM05D003660 ORTHO05D003415 1.1e-15 86.3 76 65.8
Glyma.13G314500 Glycine max HOM05D003660 ORTHO05D003415 4.3e-15 84.3 77 66.2
ATR0772G050 Amborella trichopoda HOM05D003660 ORTHO05D003415 5.6e-15 84.0 75 64.0
MBI01_g04518_MAGBIO Magnolia biondii HOM05D003660 ORTHO05D003415 5.6e-15 84.0 76 64.5
Glyma.12G186952 Glycine max HOM05D003660 ORTHO05D003415 7.3e-15 83.6 77 66.2
Phvul.005G121700 Phaseolus vulgaris HOM05D003660 ORTHO05D003415 7.3e-15 83.6 76 65.8
TAR636G3190 Trochodendron aralioides HOM05D003660 ORTHO05D003415 7.3e-15 83.6 76 64.5
CANSAT54G1844 Cannabis sativa HOM05D003660 ORTHO05D003415 9.5e-15 83.2 80 62.5
CiPaw.10G014700 Carya illinoinensis HOM05D003660 ORTHO05D003415 9.5e-15 83.2 76 61.8
FvH4_3g25870 Fragaria vesca HOM05D003660 ORTHO05D003415 9.5e-15 83.2 77 63.6
FAN21G0895 Fragaria x ananassa HOM05D003660 ORTHO05D003415 9.5e-15 83.2 77 63.6
FAN25G0104 Fragaria x ananassa HOM05D003660 ORTHO05D003415 9.5e-15 83.2 77 63.6
TAR633G2283 Trochodendron aralioides HOM05D003660 ORTHO05D003415 9.5e-15 83.2 76 64.5
RcHm_v2.0_Chr5g0047201 Rosa chinensis HOM05D003660 ORTHO05D003415 1.6e-14 82.4 77 62.3
Aqoxy2G01022 Aquilegia oxysepala HOM05D003660 ORTHO05D003415 2.1e-14 82.0 75 62.7
SGA_v2.0_scaffold7G03991 Striga asiatica HOM05D003660 ORTHO05D003415 2.1e-14 82.0 76 63.2
Aqoxy4G02700 Aquilegia oxysepala HOM05D003660 ORTHO05D003415 2.8e-14 81.6 77 62.3
Migut.D02405 Erythranthe guttata HOM05D003660 ORTHO05D003415 2.8e-14 81.6 77 64.9
Migut.D02421 Erythranthe guttata HOM05D003660 ORTHO05D003415 2.8e-14 81.6 77 64.9
Oeu035577.1 Olea europaea HOM05D003660 ORTHO05D003415 2.8e-14 81.6 76 64.5
MSTRG.12378 Avicennia marina HOM05D003660 ORTHO05D003415 6.2e-14 80.5 77 63.6
HPP92_009784 Vanilla planifolia HOM05D003660 ORTHO05D003415 6.2e-14 80.5 76 61.8
Lalb_Chr14g0376021 Lupinus albus HOM05D003660 ORTHO05D003415 1.4e-13 79.3 77 61.0
RcHm_v2.0_Chr3g0475141 Rosa chinensis HOM05D003660 ORTHO05D003415 1.8e-13 79.0 75 58.7
MD14G1033900 Malus domestica HOM05D003660 ORTHO05D003415 2.4e-13 78.6 75 61.3
ClCG10G018570 Citrullus lanatus HOM05D003660 ORTHO05D003415 3.1e-13 78.2 76 57.9
MBI17_g39787_MAGBIO Magnolia biondii HOM05D003660 ORTHO05D003415 3.1e-13 78.2 76 60.5
Psat7g186360 Pisum sativum HOM05D003660 ORTHO05D003415 3.1e-13 78.2 77 59.7
BraA02t05648Z Brassica rapa HOM05D003660 ORTHO05D003415 4.0e-13 77.8 52 80.8
Eucgr.J00533 Eucalyptus grandis HOM05D003660 ORTHO05D003415 4.0e-13 77.8 76 60.5
PGR004G0692 Punica granatum HOM05D003660 ORTHO05D003415 5.2e-13 77.4 76 59.2
ECA248G2122 Erigeron canadensis HOM05D003660 ORTHO05D003415 6.8e-13 77.0 77 59.7
CANSAT64G0684 Cannabis sativa HOM05D003660 ORTHO05D003415 8.9e-13 76.6 76 56.6
CDE04G3260 Ceratophyllum demersum HOM05D003660 ORTHO05D003415 8.9e-13 76.6 72 59.7
unitig_22.g6156 Utricularia gibba HOM05D003660 ORTHO05D003415 8.9e-13 76.6 73 64.4
Sabra04G0135300 Salix brachista HOM05D003660 ORTHO05D003415 1.2e-12 76.3 92 55.4
Sed0020241 Sechium edule HOM05D003660 ORTHO05D003415 1.2e-12 76.3 76 56.6
Zm00001eb211110 Zea mays HOM05D003660 ORTHO05D003415 2.0e-12 75.5 73 53.4
Prupe.7G099100 Prunus persica HOM05D003660 ORTHO05D003415 3.4e-12 74.7 75 58.7
MD12G1033100 Malus domestica HOM05D003660 ORTHO05D003415 5.8e-12 73.9 75 57.3
Gohir.A09G137200 Gossypium hirsutum HOM05D003660 ORTHO05D003415 7.6e-12 73.6 76 55.3
Gohir.D05G081800 Gossypium hirsutum HOM05D003660 ORTHO05D003415 7.6e-12 73.6 75 61.3
Gorai.006G151200 Gossypium raimondii HOM05D003660 ORTHO05D003415 7.6e-12 73.6 76 55.3
TWI31G1256 Tripterygium wilfordii HOM05D003660 ORTHO05D003415 7.6e-12 73.6 58 70.7
Lsat_1_v5_gn_1_57561 Lactuca sativa HOM05D003660 ORTHO05D003415 9.9e-12 73.2 77 57.1
Os03g0836500 Oryza sativa ssp. japonica HOM05D003660 ORTHO05D003415 1.3e-11 72.8 73 50.7
BcaB08g37469 Brassica carinata HOM05D003660 ORTHO05D003415 1.7e-11 72.4 75 61.3
Eucgr.K02602 Eucalyptus grandis HOM05D003660 ORTHO05D003415 1.7e-11 72.4 76 56.6
Thecc.05G099700 Theobroma cacao HOM05D003660 ORTHO05D003415 2.2e-11 72.0 76 55.3
Zm00001eb304510 Zea mays HOM05D003660 ORTHO05D003415 2.9e-11 71.6 75 50.7
ECA233G4994 Erigeron canadensis HOM05D003660 ORTHO05D003415 3.8e-11 71.2 78 48.7
Sp5g16990 Schrenkiella parvula HOM05D003660 ORTHO05D003415 3.8e-11 71.2 54 75.9
Zm00001eb242920 Zea mays HOM05D003660 ORTHO05D003415 3.8e-11 71.2 75 56.0
Manes.08G030600 Manihot esculenta HOM05D003660 ORTHO05D003415 4.9e-11 70.9 76 55.3
SEGI_28618 Sequoiadendron giganteum HOM05D003660 ORTHO05D003415 4.9e-11 70.9 76 57.9
Duzib093G1675 Durio zibethinus HOM05D003660 ORTHO05D003415 6.4e-11 70.5 76 53.9
Lalb_Chr19g0136331 Lupinus albus HOM05D003660 ORTHO05D003415 6.4e-11 70.5 76 57.9
FAN11G1383 Fragaria x ananassa HOM05D003660 ORTHO05D003415 8.4e-11 70.1 66 60.6
HanXRQChr01g0024911 Helianthus annuus HOM05D003660 ORTHO05D003415 1.9e-10 68.9 77 54.5
Gohir.A11G318200 Gossypium hirsutum HOM05D003660 ORTHO05D003415 2.4e-10 68.6 76 53.9
Gohir.D11G337400 Gossypium hirsutum HOM05D003660 ORTHO05D003415 2.4e-10 68.6 76 53.9
Gorai.007G367400 Gossypium raimondii HOM05D003660 ORTHO05D003415 2.4e-10 68.6 76 53.9
Potri.016G073500 Populus trichocarpa HOM05D003660 ORTHO05D003415 5.4e-10 67.4 79 51.9
Lj3g0015124 Lotus japonicus HOM05D003660 ORTHO05D003415 9.2e-10 66.6 77 57.1
Dinv22800 Davidia involucrata HOM05D003660 ORTHO05D003415 1.2e-09 66.2 67 62.7
Potri.006G206100 Populus trichocarpa HOM05D003660 ORTHO05D003415 1.2e-09 66.2 80 51.2
SGA_v2.0_scaffold295G47504 Striga asiatica HOM05D003660 ORTHO05D003415 1.2e-09 66.2 77 51.9
Actinidia06171 Actinidia chinensis HOM05D003660 ORTHO05D003415 2.1e-09 65.5 76 55.3
Os07g0250300 Oryza sativa ssp. japonica HOM05D003660 ORTHO05D003415 2.1e-09 65.5 74 47.3
arahy.Tifrunner.gnm1.ann1.PLL1TV Arachis hypogaea HOM05D003660 ORTHO05D003415 3.5e-09 64.7 58 65.5
Os02g0536100 Oryza sativa ssp. japonica HOM05D003660 ORTHO05D003415 7.8e-09 63.5 75 56.0
SEGI_04697 Sequoiadendron giganteum HOM05D003660 ORTHO05D003415 7.8e-09 63.5 76 51.3
MELO3C009511.2 Cucumis melo HOM05D003660 ORTHO05D003415 1.7e-08 62.4 76 50.0
TPR.G36105 Trifolium pratense HOM05D003660 ORTHO05D003415 1.7e-08 62.4 53 64.2
Migut.N02469 Erythranthe guttata HOM05D003660 ORTHO05D003415 1.1e-07 59.7 77 48.1
THA.LOC104826814 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 1.1e-07 59.7 76 43.4
TWI74G0792 Tripterygium wilfordii HOM05D003660 ORTHO05D003415 1.1e-07 59.7 76 51.3
unitig_8.g2976 Utricularia gibba HOM05D003660 ORTHO05D003415 1.9e-07 58.9 70 52.9
FAN05G5646 Fragaria x ananassa HOM05D003660 ORTHO05D003415 2.5e-07 58.5 55 60.0
Ca_01643_v3 Cicer arietinum L. HOM05D000010 ORTHO05D005236 3.3e-07 58.2 68 51.5
HanXRQChr02g0053831 Helianthus annuus HOM05D003660 ORTHO05D003415 3.3e-07 58.2 65 53.8
TWI77G0680 Tripterygium wilfordii HOM05D003660 ORTHO05D003415 3.3e-07 58.2 85 47.1
FAN14G4527 Fragaria x ananassa HOM05D003660 ORTHO05D003415 4.3e-07 57.8 55 58.2
QL01p011704 Quercus lobata HOM05D003660 ORTHO05D003415 4.3e-07 57.8 48 66.7
CARHR206980 Cardamine hirsuta HOM05D008756 ORTHO05D003415 7.3e-07 57.0 78 46.2
FAN05G5661 Fragaria x ananassa HOM05D003660 ORTHO05D003415 7.3e-07 57.0 55 58.2
arahy.Tifrunner.gnm1.ann1.W33SWH Arachis hypogaea HOM05D003660 ORTHO05D003415 9.6e-07 56.6 68 55.9
Sabra16G0076300 Salix brachista HOM05D003660 ORTHO05D003415 9.6e-07 56.6 61 59.0
Ca_19453_v3 Cicer arietinum L. HOM05D003660 ORTHO05D003415 1.2e-06 56.2 52 57.7
FAN02G2975 Fragaria x ananassa HOM05D003660 ORTHO05D003415 1.6e-06 55.8 55 56.4
QL07p037620 Quercus lobata HOM05D003660 ORTHO05D003415 1.6e-06 55.8 72 50.0
CsaV3_3G037680 Cucumis sativus L. HOM05D003660 ORTHO05D003415 2.8e-06 55.1 76 46.1
SGA_v2.0_scaffold177G39452 Striga asiatica HOM05D003660 ORTHO05D003415 4.7e-06 54.3 77 45.5
GSVIVG01036067001 Vitis vinifera HOM05D003660 ORTHO05D003415 4.7e-06 54.3 43 69.8
Carub.0006s0515 Capsella rubella HOM05D008756 ORTHO05D003415 8.1e-06 53.5 79 46.8
FvH4_6g19790 Fragaria vesca HOM05D003660 ORTHO05D003415 8.1e-06 53.5 53 52.8
TPR.G26429 Trifolium pratense HOM05D003660 ORTHO05D003415 8.1e-06 53.5 53 52.8


User provided reference genes

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