Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0005s0929 Capsella rubella HOM05D006336 ORTHO05D007819 3.0e-96 355.1 176 100.0
Carub.0251s0001 Capsella rubella HOM05D006336 ORTHO05D007819 3.0e-96 355.1 176 100.0
AL5G21500 Arabidopsis lyrata HOM05D006336 ORTHO05D007819 2.6e-92 342.0 176 95.5
AT3G43540 Arabidopsis thaliana HOM05D006336 ORTHO05D007819 2.6e-92 342.0 176 95.5
A06p22570 Brassica napus HOM05D006336 ORTHO05D007819 3.6e-89 331.6 176 92.6
BraA06t25331Z Brassica rapa HOM05D006336 ORTHO05D007819 3.6e-89 331.6 176 92.6
CARHR098720 Cardamine hirsuta HOM05D006336 ORTHO05D007819 1.0e-88 330.1 176 91.5
BcaB01g01223 Brassica carinata HOM05D006336 ORTHO05D007819 1.8e-88 329.3 176 92.0
BcaC01g02096 Brassica carinata HOM05D006336 ORTHO05D007819 2.3e-88 328.9 176 92.0
C03p68560 Brassica napus HOM05D006336 ORTHO05D007819 2.3e-88 328.9 176 92.0
BolC3t19114H Brassica oleracea HOM05D006336 ORTHO05D007819 2.3e-88 328.9 176 92.0
Thhalv10002575m.g Eutrema salsugineum HOM05D006336 ORTHO05D007819 2.6e-87 325.5 176 92.6
Sp5g17620 Schrenkiella parvula HOM05D006336 ORTHO05D007819 1.3e-86 323.2 176 90.3
Aa31LG4G13380 Aethionema arabicum HOM05D006336 ORTHO05D007819 2.2e-83 312.4 174 86.2
THA.LOC104799597 Tarenaya hassleriana HOM05D006336 ORTHO05D007819 3.0e-72 275.4 176 75.0
CANSAT25G0260 Cannabis sativa HOM05D006336 ORTHO05D007819 9.8e-71 270.4 176 72.2
Atru.chr7.1812 Acer truncatum HOM05D006336 ORTHO05D007819 2.8e-70 268.9 176 73.3
Sabra06G0167900 Salix brachista HOM05D006336 ORTHO05D007819 2.4e-69 265.8 176 71.6
Cfa017842 Carpinus fangiana HOM05D006336 ORTHO05D007819 4.1e-69 265.0 176 70.5
PGR044G0762 Punica granatum HOM05D006336 ORTHO05D007819 7.0e-69 264.2 176 71.0
TWI32G0525 Tripterygium wilfordii HOM05D006336 ORTHO05D007819 2.7e-68 262.3 176 70.5
Potri.006G217700 Populus trichocarpa HOM05D006336 ORTHO05D007819 7.7e-68 260.8 175 70.3
Glyma.17G220200 Glycine max HOM05D006336 ORTHO05D007819 2.3e-67 259.2 176 67.6
Gohir.D06G080900 Gossypium hirsutum HOM05D006336 ORTHO05D007819 2.9e-67 258.8 176 69.3
Lj5g0013864 Lotus japonicus HOM05D006336 ORTHO05D007819 2.9e-67 258.8 176 67.0
Gorai.010G094300 Gossypium raimondii HOM05D006336 ORTHO05D007819 3.8e-67 258.5 176 69.3
COL.COLO4_21171 Corchorus olitorius HOM05D006336 ORTHO05D007819 6.5e-67 257.7 176 69.9
Duzib187G1166 Durio zibethinus HOM05D006336 ORTHO05D007819 6.5e-67 257.7 176 69.9
Ciclev10009629m.g Citrus clementina HOM05D006336 ORTHO05D007819 1.9e-66 256.1 176 67.6
FvH4_2g37050 Fragaria vesca HOM05D006336 ORTHO05D007819 4.2e-66 255.0 176 66.5
Lalb_Chr24g0393711 Lupinus albus HOM05D006336 ORTHO05D007819 4.2e-66 255.0 176 66.5
GSVIVG01035507001 Vitis vinifera HOM05D006336 ORTHO05D007819 5.5e-66 254.6 175 70.3
Medtr1g014730 Medicago truncatula HOM05D006336 ORTHO05D007819 1.2e-65 253.4 176 64.8
Phvul.001G044100 Phaseolus vulgaris HOM05D006336 ORTHO05D007819 1.2e-65 253.4 176 64.8
VMungo0647G1288 Vigna mungo HOM05D006336 ORTHO05D007819 1.6e-65 253.1 174 64.9
Cpa.g.sc82.21 Carica papaya HOM05D006336 ORTHO05D007819 2.1e-65 252.7 175 68.0
ClCG05G015960 Citrullus lanatus HOM05D006336 ORTHO05D007819 2.8e-65 252.3 174 66.7
Gohir.A06G081300 Gossypium hirsutum HOM05D006336 ORTHO05D007819 3.6e-65 251.9 176 68.8
arahy.Tifrunner.gnm1.ann1.6DI6VD Arachis hypogaea HOM05D006336 ORTHO05D007819 4.7e-65 251.5 176 64.2
Prupe.1G401200 Prunus persica HOM05D006336 ORTHO05D007819 8.0e-65 250.8 176 69.3
Nn6g35635 Nelumbo nucifera HOM05D006336 ORTHO05D007819 1.0e-64 250.4 171 69.0
EL10Ac5g11099 Beta vulgaris HOM05D006336 ORTHO05D007819 1.4e-64 250.0 174 66.7
TAR624G1124 Trochodendron aralioides HOM05D006336 ORTHO05D007819 1.4e-64 250.0 171 67.8
Eucgr.C03178 Eucalyptus grandis HOM05D006336 ORTHO05D007819 1.8e-64 249.6 174 65.5
FAN27G0198 Fragaria x ananassa HOM05D006336 ORTHO05D007819 2.3e-64 249.2 176 65.3
TPR.G38941 Trifolium pratense HOM05D006336 ORTHO05D007819 2.3e-64 249.2 176 64.2
MELO3C016932.2 Cucumis melo HOM05D006336 ORTHO05D007819 8.8e-64 247.3 174 65.5
RcHm_v2.0_Chr6g0304731 Rosa chinensis HOM05D006336 ORTHO05D007819 8.8e-64 247.3 174 65.5
Ca_13088_v3 Cicer arietinum L. HOM05D006336 ORTHO05D007819 1.2e-63 246.9 176 62.5
MBI13_g01670_MAGBIO Magnolia biondii HOM05D006336 ORTHO05D007819 2.0e-63 246.1 175 66.3
MD08G1047000 Malus domestica HOM05D006336 ORTHO05D007819 2.6e-63 245.7 176 66.5
CsaV3_4G036230 Cucumis sativus L. HOM05D006336 ORTHO05D007819 4.4e-63 245.0 174 63.8
Sc04g0003070 Simmondsia chinensis HOM05D006336 ORTHO05D007819 5.7e-63 244.6 203 59.1
Hma1.2p1_0262F.1_g105216 Hydrangea macrophylla HOM05D006336 ORTHO05D007819 9.8e-63 243.8 175 67.4
AUR62021599 Chenopodium quinoa HOM05D006336 ORTHO05D007819 2.2e-62 242.7 176 63.1
PSO135G0459 Papaver somniferum HOM05D006336 ORTHO05D007819 2.8e-62 242.3 176 65.3
TAR636G2611 Trochodendron aralioides HOM05D006336 ORTHO05D007819 3.7e-62 241.9 171 66.7
Dinv09419 Davidia involucrata HOM05D006336 ORTHO05D007819 4.9e-62 241.5 176 67.6
Sed0027870 Sechium edule HOM05D006336 ORTHO05D007819 4.9e-62 241.5 174 62.1
Lj8C369G2 Lonicera japonica HOM05D006336 ORTHO05D007819 1.1e-61 240.4 176 66.5
Rhsim03G0050100 Rhododendron simsii HOM05D006336 ORTHO05D007819 1.4e-61 240.0 174 67.2
Ah.11g048000 Amaranthus hybridus HOM05D006336 ORTHO05D007819 1.8e-61 239.6 170 66.5
arahy.Tifrunner.gnm1.ann1.YUGK7S Arachis hypogaea HOM05D006336 ORTHO05D007819 1.8e-61 239.6 176 61.4
CiPaw.13G138600 Carya illinoinensis HOM05D006336 ORTHO05D007819 2.4e-61 239.2 176 64.8
vmacro07660 Vaccinium macrocarpon HOM05D006336 ORTHO05D007819 3.1e-61 238.8 174 66.7
DCAR_002185 Daucus carota HOM05D006336 ORTHO05D007819 1.2e-60 236.9 169 68.6
Cc08_g04560 Coffea canephora HOM05D006336 ORTHO05D007819 2.3e-59 232.6 176 60.8
Aqoxy7G04150 Aquilegia oxysepala HOM05D006336 ORTHO05D007819 2.9e-59 232.3 206 55.8
Oeu047793.1 Olea europaea HOM05D006336 ORTHO05D007819 6.6e-59 231.1 174 62.6
Cc08_g04580 Coffea canephora HOM05D006336 ORTHO05D007819 3.3e-58 228.8 177 60.5
Nitab4.5_0008763g0010 Nicotiana tabacum HOM05D006336 ORTHO05D007819 4.3e-58 228.4 174 60.9
FAN15G0772 Fragaria x ananassa HOM05D006336 ORTHO05D007819 7.3e-58 227.6 158 65.2
Sopen08g023730 Solanum pennellii HOM05D006336 ORTHO05D007819 1.2e-57 226.9 176 59.1
Hund02606 Selenicereus undatus HOM05D006336 ORTHO05D007819 1.6e-57 226.5 174 60.3
Lsat_1_v5_gn_6_74301 Lactuca sativa HOM05D006336 ORTHO05D007819 2.1e-57 226.1 176 62.5
MSTRG.11848 Avicennia marina HOM05D006336 ORTHO05D007819 2.8e-57 225.7 176 59.7
PGSC0003DMG400020818 Solanum tuberosum HOM05D006336 ORTHO05D007819 3.6e-57 225.3 176 59.1
HanXRQChr03g0084651 Helianthus annuus HOM05D006336 ORTHO05D007819 4.7e-57 224.9 169 66.3
ECA240G3698 Erigeron canadensis HOM05D006336 ORTHO05D007819 6.1e-57 224.6 170 64.7
ATR0681G177 Amborella trichopoda HOM05D006336 ORTHO05D007819 8.0e-57 224.2 171 60.8
Migut.A00484 Erythranthe guttata HOM05D006336 ORTHO05D007819 1.4e-56 223.4 174 61.5
SGA_v2.0_scaffold89G27365 Striga asiatica HOM05D006336 ORTHO05D007819 3.0e-56 222.2 176 61.9
CAN.G22.30 Capsicum annuum HOM05D006336 ORTHO05D007819 6.8e-56 221.1 176 59.1
Cc08_g04540 Coffea canephora HOM05D006336 ORTHO05D007819 3.4e-55 218.8 161 63.4
Actinidia27818 Actinidia chinensis HOM05D006336 ORTHO05D007819 2.2e-54 216.1 180 60.6
SalBow4G0695 Salvia bowleyana HOM05D006336 ORTHO05D007819 2.9e-54 215.7 174 60.3
unitig_32.g10956 Utricularia gibba HOM05D006336 ORTHO05D007819 2.7e-52 209.1 176 58.5
Cc00_g23060 Coffea canephora HOM05D006336 ORTHO05D007819 6.8e-48 194.5 144 61.1
Cc08_g04510 Coffea canephora HOM05D006336 ORTHO05D007819 6.8e-48 194.5 144 61.1
CDE05G3418 Ceratophyllum demersum HOM05D006336 ORTHO05D007819 6.4e-46 188.0 171 50.3
Psat6g024200 Pisum sativum HOM05D006336 ORTHO05D007819 1.4e-45 186.8 135 64.4
Pp3c1_38250 Physcomitrium patens HOM05D006336 ORTHO05D007819 6.0e-44 181.4 168 53.6
CSS0028971 Camellia sinensis var. sinensis HOM05D006336 ORTHO05D007819 1.0e-43 180.6 131 67.9
Zm00001eb313900 Zea mays HOM05D006336 ORTHO05D007819 1.1e-42 177.2 170 53.5
HPP92_019316 Vanilla planifolia HOM05D006336 ORTHO05D007819 2.5e-42 176.0 134 59.7
Dinv37442 Davidia involucrata HOM05D006336 ORTHO05D007819 1.1e-40 170.6 131 66.4
Manes.03G055500 Manihot esculenta HOM05D006336 ORTHO05D007819 2.0e-39 166.4 126 62.7
Nitab4.5_0008291g0020 Nicotiana tabacum HOM05D006336 ORTHO05D007819 7.5e-39 164.5 165 49.7
SMO351G0262 Selaginella moellendorffii HOM05D006336 ORTHO05D007819 5.4e-37 158.3 172 43.0
AagrBONN_evm.TU.Sc2ySwM_362.2113 Anthoceros agrestis HOM05D006336 ORTHO05D007819 1.3e-35 153.7 170 41.2
Solyc08g075100.4 Solanum lycopersicum HOM05D006336 ORTHO05D007819 1.6e-33 146.7 125 54.4
CDE05G3496 Ceratophyllum demersum HOM05D006336 ORTHO05D007819 5.8e-31 138.3 171 40.4
Mapoly0124s0049 Marchantia polymorpha HOM05D006336 ORTHO05D007819 1.1e-29 134.0 168 39.9
Peaxi162Scf00014g01816 Petunia axillaris HOM05D006336 ORTHO05D007819 1.1e-29 134.0 103 57.3
Ah.01g016210 Amaranthus hybridus HOM05D006336 ORTHO05D007819 3.1e-24 115.9 154 42.2
CBR_g30757 Chara braunii HOM05D006336 ORTHO05D007819 2.0e-23 113.2 175 34.9
Cc00_g35650 Coffea canephora HOM05D006336 ORTHO05D007819 1.2e-20 104.0 68 63.2
Cre06.g278264 Chlamydomonas reinhardtii HOM05D006336 ORTHO05D007819 2.7e-20 102.8 123 39.8
Thecc.09G066700 Theobroma cacao HOM05D006336 ORTHO05D007819 4.6e-20 102.1 77 62.3
AL8G10080 Arabidopsis lyrata HOM05D006336 ORTHO05D007819 5.6e-18 95.1 51 90.2
PGSC0003DMG400020816 Solanum tuberosum HOM05D006336 ORTHO05D007819 5.3e-16 88.6 72 59.7
Psat6g117360 Pisum sativum HOM05D002321 ORTHO05D007292 2.4e-13 79.7 58 63.8
CDE02G3075 Ceratophyllum demersum HOM05D005986 ORTHO05D007467 2.5e-10 69.7 138 35.5
Glyma.06G258800 Glycine max HOM05D006336 ORTHO05D007819 2.8e-09 66.2 58 58.6
CDE06G1414 Ceratophyllum demersum HOM05D005986 ORTHO05D007467 8.1e-09 64.7 137 33.6
Medtr8g070480 Medicago truncatula HOM05D005986 ORTHO05D007467 5.3e-08 62.0 93 35.5
MCO06G181 Micromonas commoda HOM05D005986 ORTHO05D007467 1.2e-07 60.8 104 35.6
AUR62042784 Chenopodium quinoa HOM05D005986 ORTHO05D007467 2.0e-07 60.1 121 29.8
ClCG10G013170 Citrullus lanatus HOM05D005986 ORTHO05D007467 2.0e-07 60.1 121 31.4
Sed0000271 Sechium edule HOM05D005986 ORTHO05D007467 2.6e-07 59.7 121 31.4
HPP92_001278 Vanilla planifolia HOM05D005986 ORTHO05D007467 3.4e-07 59.3 93 36.6
Aa31LG3G14160 Aethionema arabicum HOM05D005986 ORTHO05D007467 4.5e-07 58.9 141 29.1
Lalb_Chr16g0391881 Lupinus albus HOM05D005986 ORTHO05D007467 4.5e-07 58.9 135 30.4
Aqoxy1G00505 Aquilegia oxysepala HOM05D005986 ORTHO05D007467 5.8e-07 58.5 137 31.4
Ca_22545_v3 Cicer arietinum L. HOM05D005986 ORTHO05D007467 5.8e-07 58.5 93 35.5
Lj4g0000342 Lotus japonicus HOM05D005986 ORTHO05D007467 5.8e-07 58.5 93 35.5
ATR0582G342 Amborella trichopoda HOM05D005986 ORTHO05D007467 7.6e-07 58.2 92 37.0
FAN12G1445 Fragaria x ananassa HOM05D005986 ORTHO05D007467 7.6e-07 58.2 121 30.6
Atru.chr12.1489 Acer truncatum HOM05D005986 ORTHO05D007467 9.9e-07 57.8 121 29.8
MSTRG.8073 Avicennia marina HOM05D005986 ORTHO05D007467 9.9e-07 57.8 133 28.6
FvH4_4g21940 Fragaria vesca HOM05D005986 ORTHO05D007467 9.9e-07 57.8 121 30.6
HanXRQChr06g0175331 Helianthus annuus HOM05D005986 ORTHO05D007467 9.9e-07 57.8 186 25.8
Phvul.003G273800 Phaseolus vulgaris HOM05D005986 ORTHO05D007467 9.9e-07 57.8 93 34.4
VMungo0251G3786 Vigna mungo HOM05D005986 ORTHO05D007467 9.9e-07 57.8 93 34.4
CANSAT56G1851 Cannabis sativa HOM05D005986 ORTHO05D007467 1.3e-06 57.4 121 30.6
Eucgr.B03577 Eucalyptus grandis HOM05D005986 ORTHO05D007467 1.3e-06 57.4 133 28.6
Sed0002782 Sechium edule HOM05D005986 ORTHO05D007467 1.3e-06 57.4 121 30.6
Potri.003G158400 Populus trichocarpa HOM05D005986 ORTHO05D007467 1.7e-06 57.0 105 29.5
QL03p046965 Quercus lobata HOM05D005986 ORTHO05D007467 1.7e-06 57.0 121 30.6
Actinidia33985 Actinidia chinensis HOM05D005986 ORTHO05D007467 2.2e-06 56.6 119 28.6
COL.COLO4_06172 Corchorus olitorius HOM05D005986 ORTHO05D007467 2.2e-06 56.6 121 29.8
ECA246G5024 Erigeron canadensis HOM05D005986 ORTHO05D007467 2.2e-06 56.6 100 35.0
FAN07G2431 Fragaria x ananassa HOM05D005986 ORTHO05D007467 2.2e-06 56.6 121 29.8
PSO017G0169 Papaver somniferum HOM05D005986 ORTHO05D007467 2.2e-06 56.6 93 34.4
PSO478G1012 Papaver somniferum HOM05D005986 ORTHO05D007467 2.2e-06 56.6 93 34.4
Haze_12546 Corylus avellana HOM05D005986 ORTHO05D007467 2.9e-06 56.2 93 30.1
MELO3C026759.2 Cucumis melo HOM05D005986 ORTHO05D007467 2.9e-06 56.2 121 29.8
CsaV3_3G043440 Cucumis sativus L. HOM05D005986 ORTHO05D007467 2.9e-06 56.2 121 29.8
Lj3A1079G52 Lonicera japonica HOM05D005986 ORTHO05D007467 2.9e-06 56.2 122 29.5
Manes.08G097800 Manihot esculenta HOM05D005986 ORTHO05D007467 2.9e-06 56.2 93 32.3
PGR102G0450 Punica granatum HOM05D005986 ORTHO05D007467 2.9e-06 56.2 93 34.4
Sp2g18360 Schrenkiella parvula HOM05D005986 ORTHO05D007467 2.9e-06 56.2 93 34.4
TWI36G0919 Tripterygium wilfordii HOM05D005986 ORTHO05D007467 2.9e-06 56.2 121 30.6
arahy.Tifrunner.gnm1.ann1.7WS5BD Arachis hypogaea HOM05D005986 ORTHO05D007467 3.8e-06 55.8 137 30.7
CiPaw.05G096500 Carya illinoinensis HOM05D005986 ORTHO05D007467 3.8e-06 55.8 93 30.1
Ciclev10028467m.g Citrus clementina HOM05D005986 ORTHO05D007467 3.8e-06 55.8 93 31.2
MD13G1135500 Malus domestica HOM05D005986 ORTHO05D007467 3.8e-06 55.8 134 30.6
SEGI_07632 Sequoiadendron giganteum HOM05D005986 ORTHO05D007467 3.8e-06 55.8 93 37.6
AT5G47860 Arabidopsis thaliana HOM05D005986 ORTHO05D007467 4.9e-06 55.5 93 34.4
CARHR184430 Cardamine hirsuta HOM05D005986 ORTHO05D007467 4.9e-06 55.5 93 35.5
HanXRQChr17g0540591 Helianthus annuus HOM05D005986 ORTHO05D007467 4.9e-06 55.5 121 28.9
Os04g0405600 Oryza sativa ssp. japonica HOM05D005986 ORTHO05D007467 4.9e-06 55.5 99 34.3
AL8G19850 Arabidopsis lyrata HOM05D005986 ORTHO05D007467 6.4e-06 55.1 93 34.4
A06p39510 Brassica napus HOM05D005986 ORTHO05D007467 6.4e-06 55.1 93 34.4
C07p38760 Brassica napus HOM05D005986 ORTHO05D007467 6.4e-06 55.1 93 34.4
BolC7t44395H Brassica oleracea HOM05D005986 ORTHO05D007467 6.4e-06 55.1 93 34.4
BraA06t26866Z Brassica rapa HOM05D005986 ORTHO05D007467 6.4e-06 55.1 93 34.4
Carub.0008s0731 Capsella rubella HOM05D005986 ORTHO05D007467 6.4e-06 55.1 93 33.3
Cc11_g14820 Coffea canephora HOM05D005986 ORTHO05D007467 6.4e-06 55.1 121 28.9
COL.COLO4_04222 Corchorus olitorius HOM05D005986 ORTHO05D007467 6.4e-06 55.1 101 33.7
TAR371G0853 Trochodendron aralioides HOM05D005986 ORTHO05D007467 6.4e-06 55.1 93 31.2
arahy.Tifrunner.gnm1.ann1.946FET Arachis hypogaea HOM05D005986 ORTHO05D007467 8.4e-06 54.7 137 29.9
Thhalv10004270m.g Eutrema salsugineum HOM05D005986 ORTHO05D007467 8.4e-06 54.7 93 34.4
THA.LOC104807194 Tarenaya hassleriana HOM05D005986 ORTHO05D007467 8.4e-06 54.7 93 35.5
Thecc.01G233000 Theobroma cacao HOM05D005986 ORTHO05D007467 8.4e-06 54.7 106 29.2
unitig_747.g21105 Utricularia gibba HOM05D005986 ORTHO05D007467 8.4e-06 54.7 93 30.1
GSVIVG01001142001 Vitis vinifera HOM05D005986 ORTHO05D007467 8.4e-06 54.7 93 31.2


User provided reference genes

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