Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0135s0003 Capsella rubella HOM05D002784 ORTHO05D003113 2.3e-70 268.9 142 100.0
Carub.0007s2941 Capsella rubella HOM05D002784 ORTHO05D003113 2.5e-61 238.8 126 99.2
Carub.0005s0753 Capsella rubella HOM05D002784 ORTHO05D003113 3.3e-61 238.4 126 97.6
AL9U10660 Arabidopsis lyrata HOM05D002784 ORTHO05D003113 1.4e-46 189.9 128 82.8
Thhalv10024970m.g Eutrema salsugineum HOM05D002784 ORTHO05D003113 6.7e-46 187.6 131 78.6
AT4G13250 Arabidopsis thaliana HOM05D002784 ORTHO05D003113 8.8e-46 187.2 128 81.2
BcaC02g09436 Brassica carinata HOM05D002784 ORTHO05D003113 2.8e-44 182.2 128 80.5
C04p42720 Brassica napus HOM05D002784 ORTHO05D003113 2.8e-44 182.2 128 80.5
Sp7g10750 Schrenkiella parvula HOM05D002784 ORTHO05D003113 2.8e-44 182.2 131 77.9
BraA04t16578Z Brassica rapa HOM05D002784 ORTHO05D003113 3.7e-44 181.8 128 80.5
BolC4t25835H Brassica oleracea HOM05D002784 ORTHO05D003113 6.3e-44 181.0 128 79.7
A04p08840 Brassica napus HOM05D002784 ORTHO05D003113 8.2e-44 180.6 128 79.7
BcaC07g37392 Brassica carinata HOM05D002784 ORTHO05D003113 6.7e-38 161.0 127 73.2
BolC8t47700H Brassica oleracea HOM05D002784 ORTHO05D003113 6.7e-38 161.0 127 73.2
C08p08610 Brassica napus HOM05D002784 ORTHO05D003113 1.1e-37 160.2 127 72.4
Aa31LG9G4490 Aethionema arabicum HOM05D002784 ORTHO05D003113 2.6e-37 159.1 128 70.3
BcaB01g01528 Brassica carinata HOM05D002784 ORTHO05D003113 3.3e-37 158.7 128 74.2
A08p07050 Brassica napus HOM05D002784 ORTHO05D003113 4.4e-37 158.3 127 72.4
BraA08t32717Z Brassica rapa HOM05D002784 ORTHO05D003113 4.4e-37 158.3 127 72.4
CARHR218740 Cardamine hirsuta HOM05D002784 ORTHO05D003113 5.7e-37 157.9 131 71.8
THA.LOC104808765 Tarenaya hassleriana HOM05D002784 ORTHO05D003113 2.6e-29 132.5 134 56.7
Cpa.g.sc23.100 Carica papaya HOM05D002784 ORTHO05D003113 1.5e-16 90.1 146 41.1
Duzib150G0136 Durio zibethinus HOM05D002784 ORTHO05D003113 5.5e-16 88.2 107 52.3
Duzib168G0380 Durio zibethinus HOM05D002784 ORTHO05D003113 3.6e-15 85.5 105 51.4
Gohir.D05G024900 Gossypium hirsutum HOM05D002784 ORTHO05D003113 3.6e-15 85.5 97 54.6
COL.COLO4_34872 Corchorus olitorius HOM05D002784 ORTHO05D003113 4.7e-15 85.1 103 52.4
Gorai.009G025000 Gossypium raimondii HOM05D002784 ORTHO05D003113 1.4e-14 83.6 97 53.6
Gohir.A05G023400 Gossypium hirsutum HOM05D002784 ORTHO05D003113 6.8e-14 81.3 78 60.3
Thecc.09G109400 Theobroma cacao HOM05D002784 ORTHO05D003113 8.9e-14 80.9 107 48.6
Manes.03G021500 Manihot esculenta HOM05D002784 ORTHO05D003113 1.2e-13 80.5 151 39.7
Ciclev10008039m.g Citrus clementina HOM05D002784 ORTHO05D003113 5.7e-13 78.2 101 45.5
Psat1g043280 Pisum sativum HOM05D002784 ORTHO05D003113 7.5e-13 77.8 84 52.4
Cfa021561 Carpinus fangiana HOM05D002784 ORTHO05D003113 1.7e-12 76.6 149 35.6
CiPaw.03G231400 Carya illinoinensis HOM05D002784 ORTHO05D003113 3.7e-12 75.5 153 37.3
Haze_25725 Corylus avellana HOM05D002784 ORTHO05D003113 4.9e-12 75.1 150 35.3
Haze_25732 Corylus avellana HOM05D002784 ORTHO05D003113 4.9e-12 75.1 150 35.3
Manes.16G115400 Manihot esculenta HOM05D002784 ORTHO05D003113 8.3e-12 74.3 149 35.6
TPR.G35643 Trifolium pratense HOM05D002784 ORTHO05D003113 8.3e-12 74.3 140 37.9
Medtr6g088500 Medicago truncatula HOM05D002784 ORTHO05D003113 1.8e-11 73.2 99 43.4
Sabra18G0068300 Salix brachista HOM05D002784 ORTHO05D003113 3.1e-11 72.4 107 44.9
CANSAT56G0849 Cannabis sativa HOM05D002784 ORTHO05D003113 1.2e-10 70.5 101 46.5
CiPaw.04G163400 Carya illinoinensis HOM05D002784 ORTHO05D003113 1.6e-10 70.1 154 34.4
Ca_20224_v3 Cicer arietinum L. HOM05D002784 ORTHO05D003113 1.6e-10 70.1 88 47.7
Glyma.07G085700 Glycine max HOM05D002784 ORTHO05D003113 2.0e-10 69.7 98 45.9
MD02G1045900 Malus domestica HOM05D002784 ORTHO05D003113 2.0e-10 69.7 101 47.5
VMungo0464G1482 Vigna mungo HOM05D002784 ORTHO05D003113 2.7e-10 69.3 144 38.9
Glyma.09G191200 Glycine max HOM05D002784 ORTHO05D003113 3.5e-10 68.9 103 44.7
Phvul.004G163900 Phaseolus vulgaris HOM05D002784 ORTHO05D003113 4.5e-10 68.6 142 37.3
RcHm_v2.0_Chr2g0090301 Rosa chinensis HOM05D002784 ORTHO05D003113 5.9e-10 68.2 130 41.5
Dinv36638 Davidia involucrata HOM05D002784 ORTHO05D003113 7.8e-10 67.8 123 43.1
Lj2g0023921 Lotus japonicus HOM05D002784 ORTHO05D003113 7.8e-10 67.8 81 50.6
Potri.018G081200 Populus trichocarpa HOM05D002784 ORTHO05D003113 7.8e-10 67.8 107 42.1
arahy.Tifrunner.gnm1.ann1.R2JXRC Arachis hypogaea HOM05D002784 ORTHO05D003113 1.0e-09 67.4 88 46.6
FAN28G2959 Fragaria x ananassa HOM05D002784 ORTHO05D003113 1.0e-09 67.4 92 48.9
arahy.Tifrunner.gnm1.ann1.LV0WMB Arachis hypogaea HOM05D002784 ORTHO05D003113 1.3e-09 67.0 88 45.5
MD15G1184100 Malus domestica HOM05D002784 ORTHO05D003113 2.9e-09 65.9 63 60.3
Lalb_Chr24g0397581 Lupinus albus HOM05D002784 ORTHO05D003113 5.0e-09 65.1 84 50.0
Sed0006908 Sechium edule HOM05D002784 ORTHO05D003113 5.0e-09 65.1 142 37.3
GSVIVG01015384001 Vitis vinifera HOM05D002784 ORTHO05D003113 5.0e-09 65.1 146 38.4
Eucgr.C01035 Eucalyptus grandis HOM05D002784 ORTHO05D003113 6.6e-09 64.7 115 39.1
MELO3C025347.2 Cucumis melo HOM05D002784 ORTHO05D003113 1.5e-08 63.5 152 34.9
FvH4_1g04700 Fragaria vesca HOM05D002784 ORTHO05D003113 1.9e-08 63.2 77 50.6
FAN19G1068 Fragaria x ananassa HOM05D002784 ORTHO05D003113 1.9e-08 63.2 77 50.6
QL02p085176 Quercus lobata HOM05D002784 ORTHO05D003113 1.9e-08 63.2 150 32.0
FAN26G2551 Fragaria x ananassa HOM05D002784 ORTHO05D003113 3.3e-08 62.4 92 45.7
CDE05G2942 Ceratophyllum demersum HOM05D002784 ORTHO05D003113 5.6e-08 61.6 98 40.8
CSS0001462 Camellia sinensis var. sinensis HOM05D002784 ORTHO05D003113 7.3e-08 61.2 149 36.9
PGR142G0531 Punica granatum HOM05D002784 ORTHO05D003113 7.3e-08 61.2 143 37.1
TWI34G0459 Tripterygium wilfordii HOM05D002784 ORTHO05D003113 9.5e-08 60.8 77 44.2
CSS0034731 Camellia sinensis var. sinensis HOM05D002784 ORTHO05D003113 1.6e-07 60.1 149 36.9
Aqoxy7G01644 Aquilegia oxysepala HOM05D002784 ORTHO05D003113 2.1e-07 59.7 73 50.7
CsaV3_1G024260 Cucumis sativus L. HOM05D002784 ORTHO05D003113 2.8e-07 59.3 151 33.1
Dinv41609 Davidia involucrata HOM05D002784 ORTHO05D003113 2.8e-07 59.3 128 39.8
PSO782G3661 Papaver somniferum HOM05D002784 ORTHO05D003113 4.7e-07 58.5 92 37.0
AUR62021494 Chenopodium quinoa HOM05D002784 ORTHO05D003113 6.1e-07 58.2 144 36.1
ClCG06G008580 Citrullus lanatus HOM05D002784 ORTHO05D003113 6.1e-07 58.2 149 34.9
AUR62010985 Chenopodium quinoa HOM05D002784 ORTHO05D003113 1.4e-06 57.0 144 36.1
Actinidia09422 Actinidia chinensis HOM05D002784 ORTHO05D003113 1.8e-06 56.6 112 40.2
PSO832G4222 Papaver somniferum HOM05D002784 ORTHO05D003113 1.8e-06 56.6 95 40.0
TAR383G0815 Trochodendron aralioides HOM05D002784 ORTHO05D003113 2.3e-06 56.2 119 37.8
Actinidia20375 Actinidia chinensis HOM05D002784 ORTHO05D003113 6.8e-06 54.7 101 44.6


User provided reference genes

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