Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s2857 Capsella rubella HOM05D005976 ORTHO05D007149 0.0e+00 2361.6 1193 100.0
AT5G65950 Arabidopsis thaliana HOM05D005976 ORTHO05D007149 0.0e+00 2121.3 1193 90.0
AL8G45690 Arabidopsis lyrata HOM05D005976 ORTHO05D007149 0.0e+00 2115.1 1193 89.9
CARHR281820 Cardamine hirsuta HOM05D005976 ORTHO05D007149 0.0e+00 2088.2 1193 88.1
Thhalv10003539m.g Eutrema salsugineum HOM05D005976 ORTHO05D007149 0.0e+00 2058.5 1189 87.8
Sp2g30740 Schrenkiella parvula HOM05D005976 ORTHO05D007149 0.0e+00 2053.5 1193 86.9
A08p00020 Brassica napus HOM05D005976 ORTHO05D007149 0.0e+00 1944.5 1196 83.2
BolC3t21644H Brassica oleracea HOM05D005976 ORTHO05D007149 0.0e+00 1943.7 1198 83.1
Aa31LG1G14470 Aethionema arabicum HOM05D005976 ORTHO05D007149 0.0e+00 1923.7 1181 82.2
THA.LOC104819155 Tarenaya hassleriana HOM05D005976 ORTHO05D007149 0.0e+00 1775.0 1189 76.3
BcaNung06215 Brassica carinata HOM05D005976 ORTHO05D007149 0.0e+00 1523.8 1043 76.3
Potri.011G144700 Populus trichocarpa HOM05D005976 ORTHO05D007149 0.0e+00 1467.6 1195 62.8
Atru.chr3.58 Acer truncatum HOM05D005976 ORTHO05D007149 0.0e+00 1457.6 1200 62.8
Sabra11G0129800 Salix brachista HOM05D005976 ORTHO05D007149 0.0e+00 1453.0 1199 62.6
Gohir.A07G172300 Gossypium hirsutum HOM05D005976 ORTHO05D007149 0.0e+00 1449.9 1201 63.4
Gorai.001G200200 Gossypium raimondii HOM05D005976 ORTHO05D007149 0.0e+00 1446.0 1201 63.2
TAR381G0142 Trochodendron aralioides HOM05D005976 ORTHO05D007149 0.0e+00 1441.8 1197 61.2
COL.COLO4_25046 Corchorus olitorius HOM05D005976 ORTHO05D007149 0.0e+00 1441.4 1201 62.1
Gohir.D07G179000 Gossypium hirsutum HOM05D005976 ORTHO05D007149 0.0e+00 1441.0 1201 63.0
Dinv40218 Davidia involucrata HOM05D005976 ORTHO05D007149 0.0e+00 1435.2 1196 61.7
Duzib147G1500 Durio zibethinus HOM05D005976 ORTHO05D007149 0.0e+00 1433.7 1199 62.6
QL10p048872 Quercus lobata HOM05D005976 ORTHO05D007149 0.0e+00 1415.2 1192 61.5
RcHm_v2.0_Chr2g0096791 Rosa chinensis HOM05D005976 ORTHO05D007149 0.0e+00 1414.8 1190 61.7
Haze_03641 Corylus avellana HOM05D005976 ORTHO05D007149 0.0e+00 1413.3 1198 61.8
MD15G1228100 Malus domestica HOM05D005976 ORTHO05D007149 0.0e+00 1413.3 1196 61.4
Thecc.01G002100 Theobroma cacao HOM05D005976 ORTHO05D007149 0.0e+00 1405.6 1199 61.1
Cfa007111 Carpinus fangiana HOM05D005976 ORTHO05D007149 0.0e+00 1403.3 1203 61.5
Hma1.2p1_0085F.1_g044370 Hydrangea macrophylla HOM05D005976 ORTHO05D007149 0.0e+00 1401.3 1191 60.5
Eucgr.I02203 Eucalyptus grandis HOM05D005976 ORTHO05D007149 0.0e+00 1399.0 1191 60.1
FvH4_1g10000 Fragaria vesca HOM05D005976 ORTHO05D007149 0.0e+00 1392.9 1190 60.8
TWI73G0718 Tripterygium wilfordii HOM05D005976 ORTHO05D007149 0.0e+00 1391.7 1198 60.5
FAN19G1634 Fragaria x ananassa HOM05D005976 ORTHO05D007149 0.0e+00 1387.9 1197 60.4
Actinidia28755 Actinidia chinensis HOM05D005976 ORTHO05D007149 0.0e+00 1385.9 1179 60.7
FAN26G2461 Fragaria x ananassa HOM05D005976 ORTHO05D007149 0.0e+00 1384.8 1197 60.2
PGR119G1871 Punica granatum HOM05D005976 ORTHO05D007149 0.0e+00 1383.2 1200 59.9
FAN28G0094 Fragaria x ananassa HOM05D005976 ORTHO05D007149 0.0e+00 1378.2 1190 60.1
Ciclev10026942m.g Citrus clementina HOM05D005976 ORTHO05D007149 0.0e+00 1374.8 1193 60.5
Ca_22438_v3 Cicer arietinum L. HOM05D005976 ORTHO05D007149 0.0e+00 1374.4 1198 58.1
FAN23G1414 Fragaria x ananassa HOM05D005976 ORTHO05D007149 0.0e+00 1373.2 1197 59.8
Aqoxy6G02993 Aquilegia oxysepala HOM05D005976 ORTHO05D007149 0.0e+00 1365.5 1198 59.1
Glyma.16G112900 Glycine max HOM05D005976 ORTHO05D007149 0.0e+00 1364.0 1197 58.6
EL10Ac6g15029 Beta vulgaris HOM05D005976 ORTHO05D007149 0.0e+00 1362.4 1182 58.5
Medtr8g072710 Medicago truncatula HOM05D005976 ORTHO05D007149 0.0e+00 1358.2 1207 56.9
PSO675G7053 Papaver somniferum HOM05D005976 ORTHO05D007149 0.0e+00 1354.7 1214 58.2
Lalb_Chr16g0391711 Lupinus albus HOM05D005976 ORTHO05D007149 0.0e+00 1350.5 1197 57.4
Prupe.7G186800 Prunus persica HOM05D005976 ORTHO05D007149 0.0e+00 1349.0 1194 59.5
TPR.G27924 Trifolium pratense HOM05D005976 ORTHO05D007149 0.0e+00 1345.1 1217 56.6
AUR62018030 Chenopodium quinoa HOM05D005976 ORTHO05D007149 0.0e+00 1342.4 1182 57.4
Glyma.09G196100 Glycine max HOM05D005976 ORTHO05D007149 0.0e+00 1342.0 1197 57.8
Sopen02g026940 Solanum pennellii HOM05D005976 ORTHO05D007149 0.0e+00 1341.3 1197 58.5
Phvul.003G271600 Phaseolus vulgaris HOM05D005976 ORTHO05D007149 0.0e+00 1340.9 1200 57.9
Rhsim08G0025900 Rhododendron simsii HOM05D005976 ORTHO05D007149 0.0e+00 1340.9 1195 58.7
PGSC0003DMG402013639 Solanum tuberosum HOM05D005976 ORTHO05D007149 0.0e+00 1340.9 1197 58.3
Psat4g106360 Pisum sativum HOM05D005976 ORTHO05D007149 0.0e+00 1339.3 1202 56.7
Sc03g0004130 Simmondsia chinensis HOM05D005976 ORTHO05D007149 0.0e+00 1334.7 1186 57.0
Solyc02g082280.3 Solanum lycopersicum HOM05D005976 ORTHO05D007149 0.0e+00 1334.7 1197 58.1
vmacro18477 Vaccinium macrocarpon HOM05D005976 ORTHO05D007149 0.0e+00 1334.3 1214 57.6
VMungo0251G2412 Vigna mungo HOM05D005976 ORTHO05D007149 0.0e+00 1333.2 1197 57.9
Lj4g0003913 Lotus japonicus HOM05D005976 ORTHO05D007149 0.0e+00 1332.8 1192 57.8
Manes.02G116600 Manihot esculenta HOM05D005976 ORTHO05D007149 0.0e+00 1332.0 1062 64.3
Nitab4.5_0011596g0010 Nicotiana tabacum HOM05D005976 ORTHO05D007149 0.0e+00 1324.3 1191 57.3
Nitab4.5_0000855g0090 Nicotiana tabacum HOM05D005976 ORTHO05D007149 0.0e+00 1320.1 1191 57.6
DCAR_014120 Daucus carota HOM05D005976 ORTHO05D007149 0.0e+00 1317.0 1203 56.9
Cc07_g12200 Coffea canephora HOM05D005976 ORTHO05D007149 0.0e+00 1313.9 1198 57.3
AUR62003719 Chenopodium quinoa HOM05D005976 ORTHO05D007149 0.0e+00 1301.2 1182 56.2
arahy.Tifrunner.gnm1.ann1.2S25M9 Arachis hypogaea HOM05D005976 ORTHO05D007149 0.0e+00 1300.8 1202 56.1
MELO3C007982.2 Cucumis melo HOM05D005976 ORTHO05D007149 0.0e+00 1299.3 1186 57.1
CiPaw.06G032800 Carya illinoinensis HOM05D005976 ORTHO05D007149 0.0e+00 1298.1 1111 61.1
arahy.Tifrunner.gnm1.ann1.8BHC3E Arachis hypogaea HOM05D005976 ORTHO05D007149 0.0e+00 1297.3 1203 56.3
CAN.G1428.10 Capsicum annuum HOM05D005976 ORTHO05D007149 0.0e+00 1295.0 1191 56.5
MSTRG.18885 Avicennia marina HOM05D005976 ORTHO05D007149 0.0e+00 1293.1 1202 57.1
CsaV3_6G047940 Cucumis sativus L. HOM05D005976 ORTHO05D007149 0.0e+00 1291.2 1188 56.6
Hund19685 Selenicereus undatus HOM05D005976 ORTHO05D007149 0.0e+00 1279.6 1310 52.1
GSVIVG01026446001 Vitis vinifera HOM05D005976 ORTHO05D007149 0.0e+00 1277.7 1054 61.7
Peaxi162Scf00677g00223 Petunia axillaris HOM05D005976 ORTHO05D007149 0.0e+00 1272.3 1191 56.4
HanXRQChr09g0259071 Helianthus annuus HOM05D005976 ORTHO05D007149 0.0e+00 1258.8 1207 55.8
SalBow2G0432 Salvia bowleyana HOM05D005976 ORTHO05D007149 0.0e+00 1253.8 1234 53.4
MBI04_g31209_MAGBIO Magnolia biondii HOM05D005976 ORTHO05D007149 0.0e+00 1246.9 1209 54.3
ClCG01G020980 Citrullus lanatus HOM05D005976 ORTHO05D007149 0.0e+00 1235.7 1186 55.3
Ah.02g123200 Amaranthus hybridus HOM05D005976 ORTHO05D007149 0.0e+00 1226.8 1182 54.3
ECA232G3572 Erigeron canadensis HOM05D005976 ORTHO05D007149 0.0e+00 1221.5 1185 55.2
Nn6g31621 Nelumbo nucifera HOM05D005976 ORTHO05D007149 0.0e+00 1216.1 1070 58.5
ATR0605G043 Amborella trichopoda HOM05D005976 ORTHO05D007149 0.0e+00 1214.5 1198 53.3
SGA_v2.0_scaffold6G03353 Striga asiatica HOM05D005976 ORTHO05D007149 0.0e+00 1214.1 1209 54.5
CDE06G1894 Ceratophyllum demersum HOM05D005976 ORTHO05D007149 0.0e+00 1207.6 1194 53.0
Hma1.2p1_0085F.1_g044380 Hydrangea macrophylla HOM05D005976 ORTHO05D007149 0.0e+00 1189.5 1041 59.8
BraA08t32059Z Brassica rapa HOM05D005976 ORTHO05D007149 0.0e+00 1182.5 745 82.0
Zm00001eb252650 Zea mays HOM05D005976 ORTHO05D007149 0.0e+00 1180.2 1186 53.0
Lsat_1_v5_gn_8_114080 Lactuca sativa HOM05D005976 ORTHO05D007149 0.0e+00 1172.5 1182 52.8
Migut.D02574 Erythranthe guttata HOM05D005976 ORTHO05D007149 0.0e+00 1126.3 1204 51.7
unitig_746.g26634 Utricularia gibba HOM05D005976 ORTHO05D007149 0.0e+00 1121.3 1221 49.6
Sed0007938 Sechium edule HOM05D005976 ORTHO05D007149 0.0e+00 1105.5 1037 56.2
Sed0007865 Sechium edule HOM05D005976 ORTHO05D007149 0.0e+00 1090.1 1049 55.5
SEGI_34852 Sequoiadendron giganteum HOM05D005976 ORTHO05D007149 1.6e-310 1069.7 1233 47.4
Oeu021989.1 Olea europaea HOM05D005976 ORTHO05D007149 1.8e-309 1066.2 1200 50.4
Cpa.g.sc365.8 Carica papaya HOM05D005976 ORTHO05D007149 3.5e-273 945.7 767 63.5
Mapoly0077s0054 Marchantia polymorpha HOM05D005976 ORTHO05D007149 1.4e-248 864.0 1221 41.4
Pp3c17_22570 Physcomitrium patens HOM05D005976 ORTHO05D007149 9.4e-234 814.7 1235 39.7
Mapoly0075s0041 Marchantia polymorpha HOM05D005976 ORTHO05D007149 2.0e-231 807.0 1216 41.2
Potri.001G457201 Populus trichocarpa HOM05D005976 ORTHO05D007149 3.0e-216 756.5 830 52.0
Lj4A240G31 Lonicera japonica HOM05D005976 ORTHO05D007149 1.4e-213 747.7 729 56.1
Migut.D02599 Erythranthe guttata HOM05D005976 ORTHO05D007149 5.9e-212 742.3 744 55.2
Os02g0714500 Oryza sativa ssp. japonica HOM05D005976 ORTHO05D007149 4.3e-202 709.5 712 52.9
HPP92_022739 Vanilla planifolia HOM05D005976 ORTHO05D007149 1.2e-201 708.0 711 51.9
FAN23G1168 Fragaria x ananassa HOM05D005976 ORTHO05D007149 7.3e-178 629.0 525 62.9
SHI19208 Sapria himalayana HOM05D005976 ORTHO05D007149 2.1e-172 610.9 778 45.5
AagrBONN_evm.TU.Sc2ySwM_117.3206 Anthoceros agrestis HOM05D005976 ORTHO05D007149 1.6e-169 601.3 786 44.1
Lj4C240T7 Lonicera japonica HOM05D005976 ORTHO05D007149 5.5e-149 533.1 453 59.4
CBR_g24120 Chara braunii HOM05D005976 ORTHO05D007149 1.3e-147 528.5 1358 29.2
Hund03584 Selenicereus undatus HOM05D005976 ORTHO05D007149 1.4e-139 501.9 440 57.5
Cpa.g.sc6.347 Carica papaya HOM05D005976 ORTHO05D007149 2.6e-135 487.6 449 59.0
Zm00001eb188960 Zea mays HOM05D002434 ORTHO05D007149 7.0e-120 436.4 454 51.5
Zm00001eb055070 Zea mays HOM05D005976 ORTHO05D007149 1.9e-109 401.7 443 49.4
SMO144G0134 Selaginella moellendorffii HOM05D005976 ORTHO05D007149 5.9e-103 380.2 686 33.2
Cc04_g09170 Coffea canephora HOM05D005976 ORTHO05D007149 3.1e-75 288.1 358 44.7
Zm00001eb339980 Zea mays HOM05D005976 ORTHO05D007149 8.6e-70 270.0 324 46.9
arahy.Tifrunner.gnm1.ann1.SH4Y7X Arachis hypogaea HOM05D005976 ORTHO05D007149 1.9e-56 225.7 354 40.1
Zm00001eb425900 Zea mays HOM05D005976 ORTHO05D007149 7.9e-55 220.3 228 51.8
MCO16G661 Micromonas commoda HOM05D005976 ORTHO05D007149 4.0e-51 208.0 1262 22.6
Manes.07G108212 Manihot esculenta HOM05D005976 ORTHO05D007149 2.7e-39 168.7 179 55.3
Hma1.2p1_0085F.1_g044360 Hydrangea macrophylla HOM05D005976 ORTHO05D007149 5.0e-33 147.9 130 54.6
Hund03583 Selenicereus undatus HOM05D005976 ORTHO05D007149 2.3e-30 139.0 194 42.3
Oeu041882.1 Olea europaea HOM05D005976 ORTHO05D007149 4.5e-26 124.8 126 52.4
Cre17.g729700 Chlamydomonas reinhardtii HOM05D005976 ORTHO05D007149 1.4e-24 119.8 345 29.9
PRCOL_00004193 Prasinoderma coloniale HOM05D005976 ORTHO05D007149 1.6e-23 116.3 1200 21.9
TPR.G4013 Trifolium pratense HOM05D005976 ORTHO05D007149 1.2e-07 63.5 35 65.7


User provided reference genes

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