Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s2856 Capsella rubella HOM05D004986 ORTHO05D005898 8.2e-227 790.0 395 100.0
AL8G45680 Arabidopsis lyrata HOM05D004986 ORTHO05D005898 3.1e-202 708.4 395 90.1
AT5G65960 Arabidopsis thaliana HOM05D004986 ORTHO05D005898 1.2e-198 696.4 395 89.4
Sp2g30730 Schrenkiella parvula HOM05D004986 ORTHO05D005898 1.1e-189 666.8 392 84.9
Thhalv10004346m.g Eutrema salsugineum HOM05D004986 ORTHO05D005898 6.8e-189 664.1 396 84.6
CARHR257450 Cardamine hirsuta HOM05D004986 ORTHO05D005898 4.1e-170 601.7 399 80.2
Aa31LG1G14460 Aethionema arabicum HOM05D004986 ORTHO05D005898 5.4e-170 601.3 393 79.4
A09p10240 Brassica napus HOM05D004986 ORTHO05D005898 6.2e-150 534.6 401 73.6
C09p12150 Brassica napus HOM05D004986 ORTHO05D005898 8.7e-144 514.2 399 72.2
BolC9t54105H Brassica oleracea HOM05D004986 ORTHO05D005898 9.6e-143 510.8 400 71.5
BraA09t36669Z Brassica rapa HOM05D004986 ORTHO05D005898 3.7e-142 508.8 402 72.1
THA.LOC104826450 Tarenaya hassleriana HOM05D004986 ORTHO05D005898 1.1e-141 507.3 390 70.0
BcaC04g23101 Brassica carinata HOM05D004986 ORTHO05D005898 1.8e-141 506.5 400 71.2
BcaB04g20132 Brassica carinata HOM05D004986 ORTHO05D005898 5.8e-140 501.5 406 69.0
Lj3g0020964 Lotus japonicus HOM05D004986 ORTHO05D005898 6.7e-136 488.0 392 62.5
GSVIVG01022308001 Vitis vinifera HOM05D004986 ORTHO05D005898 1.3e-134 483.8 395 62.0
Atru.chr10.1816 Acer truncatum HOM05D004986 ORTHO05D005898 4.1e-133 478.8 395 63.0
Manes.02G115500 Manihot esculenta HOM05D004986 ORTHO05D005898 3.4e-132 475.7 397 60.2
Dinv28304 Davidia involucrata HOM05D004986 ORTHO05D005898 5.9e-132 474.9 394 61.2
Atru.chr10.1831 Acer truncatum HOM05D004986 ORTHO05D005898 1.0e-131 474.2 396 62.9
QL11p035166 Quercus lobata HOM05D004986 ORTHO05D005898 1.7e-131 473.4 394 59.4
Psat4g105800 Pisum sativum HOM05D004986 ORTHO05D005898 1.9e-130 469.9 396 61.4
Cfa007104 Carpinus fangiana HOM05D004986 ORTHO05D005898 5.5e-130 468.4 404 58.9
arahy.Tifrunner.gnm1.ann1.H550X0 Arachis hypogaea HOM05D004986 ORTHO05D005898 1.6e-129 466.8 394 59.6
Cpa.g.sc91.49 Carica papaya HOM05D004986 ORTHO05D005898 2.1e-129 466.5 395 60.8
Medtr8g073110 Medicago truncatula HOM05D004986 ORTHO05D005898 2.1e-129 466.5 396 59.3
Ca_02840_v3 Cicer arietinum L. HOM05D004986 ORTHO05D005898 3.6e-129 465.7 395 60.3
Manes.01G157000 Manihot esculenta HOM05D004986 ORTHO05D005898 4.6e-129 465.3 397 60.7
Phvul.010G020700 Phaseolus vulgaris HOM05D004986 ORTHO05D005898 5.7e-127 458.4 394 58.6
Thecc.01G002600 Theobroma cacao HOM05D004986 ORTHO05D005898 7.4e-127 458.0 395 59.5
CSS0007723 Camellia sinensis var. sinensis HOM05D004986 ORTHO05D005898 9.7e-127 457.6 396 59.6
Hma1.2p1_0085F.1_g044450 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 9.7e-127 457.6 392 58.9
TWI53G0851 Tripterygium wilfordii HOM05D004986 ORTHO05D005898 1.7e-126 456.8 399 59.1
Lalb_Chr05g0214931 Lupinus albus HOM05D004986 ORTHO05D005898 8.2e-126 454.5 400 58.5
RcHm_v2.0_Chr2g0096901 Rosa chinensis HOM05D004986 ORTHO05D005898 1.8e-125 453.4 406 58.4
CARHR281810 Cardamine hirsuta HOM05D004986 ORTHO05D005898 4.1e-125 452.2 270 85.2
Nitab4.5_0000495g0010 Nicotiana tabacum HOM05D004986 ORTHO05D005898 6.9e-125 451.4 393 59.3
Duzib106G1274 Durio zibethinus HOM05D004986 ORTHO05D005898 1.5e-124 450.3 403 58.6
Oeu002901.1 Olea europaea HOM05D004986 ORTHO05D005898 1.5e-124 450.3 403 59.3
Nitab4.5_0004269g0070 Nicotiana tabacum HOM05D004986 ORTHO05D005898 2.0e-124 449.9 394 59.4
Ciclev10025602m.g Citrus clementina HOM05D004986 ORTHO05D005898 4.5e-124 448.7 401 59.6
Migut.B01487 Erythranthe guttata HOM05D004986 ORTHO05D005898 5.9e-124 448.4 392 59.2
CiPaw.07G000800 Carya illinoinensis HOM05D004986 ORTHO05D005898 1.0e-123 447.6 394 58.1
Glyma.09G196600 Glycine max HOM05D004986 ORTHO05D005898 1.0e-123 447.6 394 59.4
Eucgr.I02210 Eucalyptus grandis HOM05D004986 ORTHO05D005898 1.7e-123 446.8 399 58.1
PGR119G1257 Punica granatum HOM05D004986 ORTHO05D005898 1.7e-123 446.8 398 59.8
Actinidia22885 Actinidia chinensis HOM05D004986 ORTHO05D005898 3.8e-123 445.7 395 59.5
Actinidia32993 Actinidia chinensis HOM05D004986 ORTHO05D005898 3.8e-123 445.7 399 58.6
FvH4_1g10130 Fragaria vesca HOM05D004986 ORTHO05D005898 8.5e-123 444.5 400 57.8
VMungo0331G1669 Vigna mungo HOM05D004986 ORTHO05D005898 8.5e-123 444.5 397 57.4
FAN23G1121 Fragaria x ananassa HOM05D004986 ORTHO05D005898 1.1e-122 444.1 400 57.8
CAN.G647.4 Capsicum annuum HOM05D004986 ORTHO05D005898 1.9e-122 443.4 399 58.9
FAN26G2552 Fragaria x ananassa HOM05D004986 ORTHO05D005898 1.9e-122 443.4 400 57.0
FAN28G2129 Fragaria x ananassa HOM05D004986 ORTHO05D005898 1.9e-122 443.4 400 57.0
Glyma.16G112300 Glycine max HOM05D004986 ORTHO05D005898 1.9e-122 443.4 395 58.5
SalBow5G3763 Salvia bowleyana HOM05D004986 ORTHO05D005898 1.9e-122 443.4 398 58.3
Prupe.7G185600 Prunus persica HOM05D004986 ORTHO05D005898 2.5e-122 443.0 404 57.7
FAN23G2177 Fragaria x ananassa HOM05D004986 ORTHO05D005898 4.2e-122 442.2 400 57.8
Peaxi162Scf00920g00114 Petunia axillaris HOM05D004986 ORTHO05D005898 4.2e-122 442.2 397 58.7
PGSC0003DMG400018667 Solanum tuberosum HOM05D004986 ORTHO05D005898 5.5e-122 441.8 399 58.9
Haze_03636 Corylus avellana HOM05D004986 ORTHO05D005898 9.4e-122 441.0 446 53.6
MSTRG.17107 Avicennia marina HOM05D004986 ORTHO05D005898 1.2e-121 440.7 397 57.7
Solyc03g032050.4 Solanum lycopersicum HOM05D004986 ORTHO05D005898 1.6e-121 440.3 399 58.6
CsaV3_4G027660 Cucumis sativus L. HOM05D004986 ORTHO05D005898 2.1e-121 439.9 399 57.1
FAN19G1207 Fragaria x ananassa HOM05D004986 ORTHO05D005898 2.1e-121 439.9 400 57.2
Sopen03g005900 Solanum pennellii HOM05D004986 ORTHO05D005898 3.6e-121 439.1 397 58.7
arahy.Tifrunner.gnm1.ann1.UZ6AL0 Arachis hypogaea HOM05D004986 ORTHO05D005898 4.7e-121 438.7 427 54.3
Cc07_g12070 Coffea canephora HOM05D004986 ORTHO05D005898 6.1e-121 438.3 401 55.9
ClCG04G005010 Citrullus lanatus HOM05D004986 ORTHO05D005898 1.0e-120 437.6 398 57.0
CANSAT21G0416 Cannabis sativa HOM05D004986 ORTHO05D005898 6.7e-120 434.9 399 56.6
DCAR_024399 Daucus carota HOM05D004986 ORTHO05D005898 6.7e-120 434.9 395 57.0
Gorai.005G068600 Gossypium raimondii HOM05D004986 ORTHO05D005898 1.1e-119 434.1 396 57.3
PSO170G5246 Papaver somniferum HOM05D004986 ORTHO05D005898 1.5e-119 433.7 403 56.8
HanXRQChr10g0316221 Helianthus annuus HOM05D004986 ORTHO05D005898 2.6e-119 433.0 395 57.0
Sed0027663 Sechium edule HOM05D004986 ORTHO05D005898 3.3e-119 432.6 394 57.1
TAR628G0962 Trochodendron aralioides HOM05D004986 ORTHO05D005898 5.7e-119 431.8 395 57.0
MD15G1228500 Malus domestica HOM05D004986 ORTHO05D005898 1.3e-118 430.6 415 56.4
Gohir.D02G061000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 4.8e-118 428.7 396 56.8
MELO3C026343.2 Cucumis melo HOM05D004986 ORTHO05D005898 8.2e-118 427.9 390 57.4
Rhsim10G0191900 Rhododendron simsii HOM05D004986 ORTHO05D005898 1.8e-117 426.8 392 56.9
Gohir.D03G000700 Gossypium hirsutum HOM05D004986 ORTHO05D005898 5.3e-117 425.2 400 56.5
Gohir.A02G179000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 1.2e-116 424.1 409 54.8
Hund21384 Selenicereus undatus HOM05D004986 ORTHO05D005898 1.2e-116 424.1 395 56.2
Gohir.A02G055800 Gossypium hirsutum HOM05D004986 ORTHO05D005898 1.5e-116 423.7 394 56.3
Aqoxy6G01559 Aquilegia oxysepala HOM05D004986 ORTHO05D005898 3.8e-115 419.1 406 54.2
Gorai.003G001100 Gossypium raimondii HOM05D004986 ORTHO05D005898 6.5e-115 418.3 400 56.0
ECA240G4103 Erigeron canadensis HOM05D004986 ORTHO05D005898 9.4e-114 414.5 396 56.1
TAR381G0383 Trochodendron aralioides HOM05D004986 ORTHO05D005898 2.1e-113 413.3 390 56.4
Nn5g31026 Nelumbo nucifera HOM05D004986 ORTHO05D005898 1.0e-112 411.0 456 50.7
Lsat_1_v5_gn_2_73561 Lactuca sativa HOM05D004986 ORTHO05D005898 2.3e-112 409.8 404 54.5
unitig_26.g8860 Utricularia gibba HOM05D004986 ORTHO05D005898 8.2e-110 401.4 398 55.0
SGA_v2.0_scaffold52G19267 Striga asiatica HOM05D004986 ORTHO05D005898 1.1e-106 391.0 374 55.1
Ah.10g026930 Amaranthus hybridus HOM05D004986 ORTHO05D005898 1.5e-106 390.6 395 51.9
Sabra02G0136200 Salix brachista HOM05D004986 ORTHO05D005898 1.9e-106 390.2 401 53.1
vmacro20612 Vaccinium macrocarpon HOM05D004986 ORTHO05D005898 5.5e-106 388.7 405 51.9
EL10Ac3g05234 Beta vulgaris HOM05D004986 ORTHO05D005898 1.0e-104 384.4 389 52.4
Lj2C503G0 Lonicera japonica HOM05D004986 ORTHO05D005898 1.4e-104 384.0 384 55.7
SGA_v2.0_scaffold34G13577 Striga asiatica HOM05D004986 ORTHO05D005898 1.2e-103 380.9 422 48.8
Os04g0584800 Oryza sativa ssp. japonica HOM05D004986 ORTHO05D005898 9.1e-101 371.3 409 49.4
Zm00001eb072790 Zea mays HOM05D004986 ORTHO05D005898 1.0e-99 367.9 412 48.3
HPP92_007280 Vanilla planifolia HOM05D004986 ORTHO05D005898 1.2e-97 360.9 396 48.0
Potri.002G177100 Populus trichocarpa HOM05D004986 ORTHO05D005898 2.3e-96 356.7 321 58.9
Psat0s3210g0040 Pisum sativum HOM05D004986 ORTHO05D005898 9.8e-95 351.3 287 61.0
AUR62006055 Chenopodium quinoa HOM05D004986 ORTHO05D005898 6.3e-94 348.6 390 46.9
Hma1.2p1_0085F.1_g044460 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 1.6e-89 334.0 299 55.2
MBI13_g20494_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 4.0e-88 329.3 463 43.4
COL.COLO4_34271 Corchorus olitorius HOM05D004986 ORTHO05D005898 6.8e-88 328.6 399 48.6
ATR0807G113 Amborella trichopoda HOM05D004986 ORTHO05D005898 1.3e-83 314.3 462 40.7
Sc05g0009010 Simmondsia chinensis HOM05D004986 ORTHO05D005898 6.8e-80 302.0 349 49.0
SEGI_13138 Sequoiadendron giganteum HOM05D004986 ORTHO05D005898 1.5e-79 300.8 401 41.9
Potri.007G064500 Populus trichocarpa HOM05D004986 ORTHO05D005898 4.9e-78 295.8 366 46.4
Mapoly0024s0125 Marchantia polymorpha HOM05D004986 ORTHO05D005898 3.2e-77 293.1 427 40.3
CDE04G0629 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 1.2e-73 281.2 402 42.3
Dinv40206 Davidia involucrata HOM05D004986 ORTHO05D005898 3.6e-73 279.6 255 57.6
Atru.chr3.37 Acer truncatum HOM05D004986 ORTHO05D005898 6.8e-72 275.4 406 42.6
Oeu037412.2 Olea europaea HOM05D004986 ORTHO05D005898 1.5e-71 274.2 403 44.4
Lj4g0017944 Lotus japonicus HOM05D004986 ORTHO05D005898 1.4e-69 267.7 361 46.0
SMO147G0325 Selaginella moellendorffii HOM05D004986 ORTHO05D005898 9.5e-66 255.0 402 39.1
AagrBONN_evm.TU.Sc2ySwM_362.836 Anthoceros agrestis HOM05D004986 ORTHO05D005898 2.1e-65 253.8 463 36.1
Pp3c17_5460 Physcomitrium patens HOM05D004986 ORTHO05D005898 3.6e-65 253.1 446 38.3
HanXRQChr13g0388311 Helianthus annuus HOM05D004986 ORTHO05D005898 4.3e-58 229.6 219 54.8
Sed0024004 Sechium edule HOM05D004986 ORTHO05D005898 1.7e-54 217.6 317 43.5
MD02G1112100 Malus domestica HOM05D004986 ORTHO05D005898 5.4e-53 212.6 166 59.6
HanXRQChr13g0388301 Helianthus annuus HOM05D004986 ORTHO05D005898 3.3e-50 203.4 180 56.7
CDE07G1230 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 7.3e-50 202.2 258 39.9
AUR62035574 Chenopodium quinoa HOM05D004986 ORTHO05D005898 5.3e-40 169.5 174 48.9
MD02G1113000 Malus domestica HOM05D004986 ORTHO05D005898 2.9e-38 163.7 157 53.5
SGA_v2.0_scaffold578G53029 Striga asiatica HOM05D004986 ORTHO05D005898 3.8e-38 163.3 193 48.7
MD02G1109300 Malus domestica HOM05D004986 ORTHO05D005898 3.2e-37 160.2 167 47.9
Atru.chr3.32 Acer truncatum HOM05D004986 ORTHO05D005898 1.5e-34 151.4 175 49.7
Atru.chr3.33 Acer truncatum HOM05D004986 ORTHO05D005898 2.1e-33 147.5 110 62.7
CBR_g24177 Chara braunii HOM05D004986 ORTHO05D005898 2.0e-31 141.0 258 36.4
TPR.G33051 Trifolium pratense HOM05D004986 ORTHO05D005898 3.7e-25 120.2 88 59.1
MD02G1113100 Malus domestica HOM05D004986 ORTHO05D005898 2.4e-24 117.5 188 43.1
CARHR281800 Cardamine hirsuta HOM05D004986 ORTHO05D005898 1.3e-19 101.7 54 90.7
Zm00001eb355160 Zea mays HOM05D004986 ORTHO05D005898 1.5e-18 98.2 93 54.8
Zm00001eb338840 Zea mays HOM05D004986 ORTHO05D005898 7.4e-18 95.9 70 64.3
MD02G1112600 Malus domestica HOM05D004986 ORTHO05D005898 2.8e-17 94.0 139 38.8
MBI15_g18235_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 1.5e-15 88.2 118 44.9
arahy.Tifrunner.gnm1.ann1.864E1P Arachis hypogaea HOM05D004986 ORTHO05D005898 4.2e-13 80.1 88 52.3
arahy.Tifrunner.gnm1.ann1.GJAM3K Arachis hypogaea HOM05D004986 ORTHO05D005898 4.2e-13 80.1 88 52.3
arahy.Tifrunner.gnm1.ann1.06FJIN Arachis hypogaea HOM05D004986 ORTHO05D005898 7.2e-13 79.3 54 70.4
arahy.Tifrunner.gnm1.ann1.757MF4 Arachis hypogaea HOM05D004986 ORTHO05D005898 7.2e-13 79.3 54 70.4
CDE04G2304 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 2.3e-11 74.3 183 32.8
MCO09G766 Micromonas commoda HOM05D004986 ORTHO05D005898 3.0e-11 73.9 398 22.4
MD02G1112300 Malus domestica HOM05D004986 ORTHO05D005898 1.7e-09 68.2 81 39.5
Hund16730 Selenicereus undatus HOM05D000064 ORTHO05D008287 6.5e-06 56.2 123 30.1


User provided reference genes

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