Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s2852 Capsella rubella HOM05D023070 ORTHO05D023654 3.6e-107 391.7 220 100.0
AT5G66000 Arabidopsis thaliana HOM05D023070 ORTHO05D023654 3.8e-64 248.8 225 73.3
AL8G45630 Arabidopsis lyrata HOM05D023070 ORTHO05D023654 4.6e-62 241.9 222 71.6
Sp2g30690 Schrenkiella parvula HOM05D023070 ORTHO05D023654 5.2e-53 211.8 225 64.9
CARHR281760 Cardamine hirsuta HOM05D023070 ORTHO05D023654 2.7e-41 172.9 199 64.8
Cpa.g.sc6.366 Carica papaya HOM05D004420 ORTHO05D005048 1.8e-13 80.5 145 42.1
CSS0016949 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 1.3e-11 74.3 269 29.0
CSS0044881 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 1.3e-11 74.3 269 29.0
Lalb_Chr09g0324761 Lupinus albus HOM05D004420 ORTHO05D005048 1.7e-11 73.9 101 48.5
Phvul.003G270300 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 8.3e-11 71.6 239 28.0
COL.COLO4_22555 Corchorus olitorius HOM05D004420 ORTHO05D005048 1.1e-10 71.2 147 40.8
arahy.Tifrunner.gnm1.ann1.7Y7MXI Arachis hypogaea HOM05D004420 ORTHO05D005048 1.4e-10 70.9 147 40.8
arahy.Tifrunner.gnm1.ann1.PTZ9GF Arachis hypogaea HOM05D004420 ORTHO05D005048 1.4e-10 70.9 147 40.8
THA.LOC104807425 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 1.9e-10 70.5 190 36.3
Gohir.D07G178200 Gossypium hirsutum HOM05D004420 ORTHO05D005048 2.4e-10 70.1 124 46.8
Gorai.001G199300 Gossypium raimondii HOM05D004420 ORTHO05D005048 2.4e-10 70.1 124 46.8
TWI53G1718 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 2.4e-10 70.1 205 31.7
Ciclev10025852m.g Citrus clementina HOM05D004420 ORTHO05D005048 5.4e-10 68.9 156 32.7
PGR119G1834 Punica granatum HOM05D004420 ORTHO05D005048 5.4e-10 68.9 179 35.2
VMungo0251G1478 Vigna mungo HOM05D004420 ORTHO05D005048 1.2e-09 67.8 239 31.4
AL3G50510 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 2.0e-09 67.0 119 37.0
Cfa007085 Carpinus fangiana HOM05D004420 ORTHO05D005048 4.6e-09 65.9 106 48.1
Manes.01G155700 Manihot esculenta HOM05D004420 ORTHO05D005048 4.6e-09 65.9 193 31.6
Prupe.7G183600 Prunus persica HOM05D004420 ORTHO05D005048 6.0e-09 65.5 197 31.0
Eucgr.I02220 Eucalyptus grandis HOM05D004420 ORTHO05D005048 7.8e-09 65.1 222 32.4
Aa31LG8G14840 Aethionema arabicum HOM05D004420 ORTHO05D005048 1.0e-08 64.7 104 36.5
CiPaw.13G121300 Carya illinoinensis HOM05D004420 ORTHO05D005048 1.0e-08 64.7 147 42.9
Psat4g103680 Pisum sativum HOM05D004420 ORTHO05D005048 1.0e-08 64.7 193 33.7
Actinidia22893 Actinidia chinensis HOM05D004420 ORTHO05D005048 1.3e-08 64.3 168 35.1
CiPaw.08G182000 Carya illinoinensis HOM05D004420 ORTHO05D005048 1.7e-08 63.9 106 51.9
Thecc.01G004900 Theobroma cacao HOM05D004420 ORTHO05D005048 1.7e-08 63.9 106 49.1
Actinidia35683 Actinidia chinensis HOM05D004420 ORTHO05D005048 2.3e-08 63.5 169 37.9
Potri.007G063000 Populus trichocarpa HOM05D004420 ORTHO05D005048 2.3e-08 63.5 102 45.1
THA.LOC104819714 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 3.0e-08 63.2 110 37.3
Gohir.A02G178300 Gossypium hirsutum HOM05D004420 ORTHO05D005048 5.0e-08 62.4 107 48.6
TWI09G0210 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 5.0e-08 62.4 206 27.2
Eucgr.J02539 Eucalyptus grandis HOM05D004420 ORTHO05D005048 6.6e-08 62.0 138 37.7
Glyma.01G158300 Glycine max HOM05D004420 ORTHO05D005048 6.6e-08 62.0 234 31.6
Gohir.A07G173800 Gossypium hirsutum HOM05D004420 ORTHO05D005048 6.6e-08 62.0 145 39.3
AT4G35510 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 8.6e-08 61.6 102 38.2
DCAR_014284 Daucus carota HOM05D004420 ORTHO05D005048 8.6e-08 61.6 168 32.7
DCAR_014308 Daucus carota HOM05D004420 ORTHO05D005048 8.6e-08 61.6 168 32.7
Gohir.D03G001500 Gossypium hirsutum HOM05D004420 ORTHO05D005048 8.6e-08 61.6 107 48.6
Gorai.003G001900 Gossypium raimondii HOM05D004420 ORTHO05D005048 8.6e-08 61.6 107 48.6
QL06p053029 Quercus lobata HOM05D004420 ORTHO05D005048 8.6e-08 61.6 112 44.6
Duzib147G0341 Durio zibethinus HOM05D004420 ORTHO05D005048 1.1e-07 61.2 107 42.1
BcaC06g36286 Brassica carinata HOM05D004420 ORTHO05D005048 1.5e-07 60.8 134 38.8
Duzib264G0151 Durio zibethinus HOM05D004420 ORTHO05D005048 1.5e-07 60.8 104 52.9
Glyma.11G086400 Glycine max HOM05D004420 ORTHO05D005048 1.5e-07 60.8 234 32.5
CANSAT25G3726 Cannabis sativa HOM05D004420 ORTHO05D005048 1.9e-07 60.5 216 34.7
CiPaw.07G002200 Carya illinoinensis HOM05D004420 ORTHO05D005048 1.9e-07 60.5 188 37.2
CsaV3_3G000180 Cucumis sativus L. HOM05D004420 ORTHO05D005048 1.9e-07 60.5 126 42.9
Phvul.002G117000 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 1.9e-07 60.5 240 29.6
Actinidia17355 Actinidia chinensis HOM05D004420 ORTHO05D005048 2.5e-07 60.1 224 28.6
CAN.G1238.15 Capsicum annuum HOM05D004420 ORTHO05D005048 2.5e-07 60.1 133 44.4
Ca_02853_v3 Cicer arietinum L. HOM05D004420 ORTHO05D005048 2.5e-07 60.1 227 30.4
Migut.F01091 Erythranthe guttata HOM05D004420 ORTHO05D005048 2.5e-07 60.1 136 45.6
BcaNung03633 Brassica carinata HOM05D004420 ORTHO05D005048 3.3e-07 59.7 133 33.8
Oeu045734.2 Olea europaea HOM05D004420 ORTHO05D005048 3.3e-07 59.7 220 33.6
SGA_v2.0_scaffold10G05298 Striga asiatica HOM05D004420 ORTHO05D005048 3.3e-07 59.7 230 33.9
Dinv40193 Davidia involucrata HOM05D004420 ORTHO05D005048 4.3e-07 59.3 240 32.1
Sopen02g027250 Solanum pennellii HOM05D004420 ORTHO05D005048 4.3e-07 59.3 133 45.1
vmacro20627 Vaccinium macrocarpon HOM05D004420 ORTHO05D005048 4.3e-07 59.3 169 33.1
MELO3C013712.2 Cucumis melo HOM05D004420 ORTHO05D005048 5.6e-07 58.9 126 42.9
Lalb_Chr05g0214821 Lupinus albus HOM05D004420 ORTHO05D005048 5.6e-07 58.9 237 35.9
Rhsim10G0195100 Rhododendron simsii HOM05D004420 ORTHO05D005048 5.6e-07 58.9 169 34.3
Sp3g30900 Schrenkiella parvula HOM05D004420 ORTHO05D005048 5.6e-07 58.9 201 29.9
BcaC03g15301 Brassica carinata HOM05D020457 ORTHO05D021832 7.3e-07 58.5 192 45.3
C02p29120 Brassica napus HOM05D020457 ORTHO05D021832 7.3e-07 58.5 192 45.3
BolC2t08960H Brassica oleracea HOM05D020457 ORTHO05D021832 7.3e-07 58.5 192 45.3
Carub.0007s0482 Capsella rubella HOM05D004420 ORTHO05D005048 9.5e-07 58.2 103 36.9
PGSC0003DMG400001515 Solanum tuberosum HOM05D004420 ORTHO05D005048 9.5e-07 58.2 133 45.1
Potri.005G102000 Populus trichocarpa HOM05D004420 ORTHO05D005048 1.2e-06 57.8 152 32.2
Sp7g33290 Schrenkiella parvula HOM05D004420 ORTHO05D005048 1.2e-06 57.8 111 36.9
CARHR243840 Cardamine hirsuta HOM05D004420 ORTHO05D005048 1.6e-06 57.4 226 29.6
Glyma.16G111400 Glycine max HOM05D004420 ORTHO05D005048 1.6e-06 57.4 154 34.4
unitig_46.g18801 Utricularia gibba HOM05D004420 ORTHO05D005048 1.6e-06 57.4 144 30.6
Dinv40192 Davidia involucrata HOM05D004420 ORTHO05D005048 2.1e-06 57.0 129 39.5
Solyc02g082570.3 Solanum lycopersicum HOM05D004420 ORTHO05D005048 2.1e-06 57.0 136 44.1
VMungo1215G0928 Vigna mungo HOM05D004420 ORTHO05D005048 2.8e-06 56.6 192 31.2
C07p05740 Brassica napus HOM05D004420 ORTHO05D005048 4.7e-06 55.8 134 37.3
Nitab4.5_0004608g0040 Nicotiana tabacum HOM05D004420 ORTHO05D005048 4.7e-06 55.8 133 41.4
Hma1.2p1_0300F.1_g117950 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 6.2e-06 55.5 215 34.0
MD15G1230400 Malus domestica HOM05D004420 ORTHO05D005048 6.2e-06 55.5 145 33.1
unitig_52.g17736 Utricularia gibba HOM05D004420 ORTHO05D005048 6.2e-06 55.5 171 40.4
A06p33900 Brassica napus HOM05D004420 ORTHO05D005048 8.1e-06 55.1 229 28.4
Lj2g0010108 Lotus japonicus HOM05D004420 ORTHO05D005048 8.1e-06 55.1 189 30.7
Oeu043391.2 Olea europaea HOM05D004420 ORTHO05D005048 8.1e-06 55.1 220 30.5


User provided reference genes

Program Settings