Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s2851 Capsella rubella HOM05D006972 ORTHO05D008519 6.1e-104 380.9 209 100.0
AL8G45620 Arabidopsis lyrata HOM05D006972 ORTHO05D008519 5.9e-83 311.2 209 78.9
AT5G66005 Arabidopsis thaliana HOM05D006972 ORTHO05D008519 1.1e-81 307.0 209 78.0
THA.LOC104826441 Tarenaya hassleriana HOM05D006972 ORTHO05D008519 7.3e-73 277.7 209 68.9
Eucgr.I02225 Eucalyptus grandis HOM05D006972 ORTHO05D008519 1.4e-63 246.9 209 63.2
Cfa007077 Carpinus fangiana HOM05D006972 ORTHO05D008519 3.1e-63 245.7 209 60.3
TAR628G0904 Trochodendron aralioides HOM05D006972 ORTHO05D008519 2.6e-62 242.7 209 59.8
Haze_03655 Corylus avellana HOM05D006972 ORTHO05D008519 3.4e-62 242.3 200 62.0
Manes.01G155400 Manihot esculenta HOM05D006972 ORTHO05D008519 3.4e-62 242.3 198 63.6
TPR.G33865 Trifolium pratense HOM05D006972 ORTHO05D008519 5.8e-62 241.5 209 61.7
Prupe.7G182900 Prunus persica HOM05D006972 ORTHO05D008519 9.8e-62 240.7 198 63.1
RcHm_v2.0_Chr2g0097181 Rosa chinensis HOM05D006972 ORTHO05D008519 1.7e-61 240.0 198 62.1
GSVIVG01026641001 Vitis vinifera HOM05D006972 ORTHO05D008519 1.7e-61 240.0 209 60.8
TWI73G0968 Tripterygium wilfordii HOM05D006972 ORTHO05D008519 3.7e-61 238.8 208 58.7
Lalb_Chr16g0380011 Lupinus albus HOM05D006972 ORTHO05D008519 6.4e-61 238.0 209 60.8
Psat2g148200 Pisum sativum HOM05D006972 ORTHO05D008519 8.3e-61 237.7 209 60.8
MSTRG.3630 Avicennia marina HOM05D006972 ORTHO05D008519 1.9e-60 236.5 209 58.9
ClCG10G000270 Citrullus lanatus HOM05D006972 ORTHO05D008519 1.9e-60 236.5 202 61.9
Atru.chr3.134 Acer truncatum HOM05D006972 ORTHO05D008519 2.4e-60 236.1 208 61.5
Oeu012451.1 Olea europaea HOM05D006972 ORTHO05D008519 2.4e-60 236.1 209 58.9
SalBow5G0785 Salvia bowleyana HOM05D006972 ORTHO05D008519 2.4e-60 236.1 209 59.3
Nitab4.5_0005297g0020 Nicotiana tabacum HOM05D006972 ORTHO05D008519 4.1e-60 235.3 205 61.0
CiPaw.08G181600 Carya illinoinensis HOM05D006972 ORTHO05D008519 5.4e-60 235.0 209 59.3
Nitab4.5_0000495g0120 Nicotiana tabacum HOM05D006972 ORTHO05D008519 7.0e-60 234.6 202 59.4
Solyc03g032120.3 Solanum lycopersicum HOM05D006972 ORTHO05D008519 7.0e-60 234.6 197 61.4
Cpa.g.sc365.5 Carica papaya HOM05D006972 ORTHO05D008519 1.2e-59 233.8 198 61.6
Ca_24981_v3 Cicer arietinum L. HOM05D006972 ORTHO05D008519 1.2e-59 233.8 209 60.3
MELO3C013724.2 Cucumis melo HOM05D006972 ORTHO05D008519 1.2e-59 233.8 197 61.9
Ciclev10026547m.g Citrus clementina HOM05D006972 ORTHO05D008519 1.6e-59 233.4 208 59.6
FAN19G2622 Fragaria x ananassa HOM05D006972 ORTHO05D008519 1.6e-59 233.4 198 61.6
CANSAT25G3183 Cannabis sativa HOM05D006972 ORTHO05D008519 2.1e-59 233.0 204 59.3
QL06p052953 Quercus lobata HOM05D006972 ORTHO05D008519 2.7e-59 232.6 219 58.4
Glyma.01G158800 Glycine max HOM05D006972 ORTHO05D008519 6.0e-59 231.5 209 60.8
Cc07_g11850 Coffea canephora HOM05D006972 ORTHO05D008519 1.0e-58 230.7 205 59.0
Sed0027466 Sechium edule HOM05D006972 ORTHO05D008519 1.0e-58 230.7 197 62.4
HanXRQChr14g0442531 Helianthus annuus HOM05D006972 ORTHO05D008519 1.3e-58 230.3 205 59.5
Potri.005G101501 Populus trichocarpa HOM05D006972 ORTHO05D008519 3.0e-58 229.2 196 61.7
CSS0043244 Camellia sinensis var. sinensis HOM05D006972 ORTHO05D008519 5.1e-58 228.4 209 56.0
Rhsim10G0195900 Rhododendron simsii HOM05D006972 ORTHO05D008519 6.6e-58 228.0 208 57.7
Actinidia17360 Actinidia chinensis HOM05D006972 ORTHO05D008519 8.6e-58 227.6 209 58.4
Aqoxy5G01011 Aquilegia oxysepala HOM05D006972 ORTHO05D008519 8.6e-58 227.6 209 58.9
Migut.L00961 Erythranthe guttata HOM05D006972 ORTHO05D008519 8.6e-58 227.6 210 56.7
CsaV3_3G000300 Cucumis sativus L. HOM05D006972 ORTHO05D008519 1.1e-57 227.3 197 60.9
Gohir.A07G171100 Gossypium hirsutum HOM05D006972 ORTHO05D008519 1.5e-57 226.9 203 55.7
vmacro20633 Vaccinium macrocarpon HOM05D006972 ORTHO05D008519 1.5e-57 226.9 208 56.7
Gohir.D07G177900 Gossypium hirsutum HOM05D006972 ORTHO05D008519 2.5e-57 226.1 205 54.6
Lsat_1_v5_gn_2_73640 Lactuca sativa HOM05D006972 ORTHO05D008519 2.5e-57 226.1 198 60.1
Phvul.002G116601 Phaseolus vulgaris HOM05D006972 ORTHO05D008519 3.3e-57 225.7 212 59.9
Duzib147G0479 Durio zibethinus HOM05D006972 ORTHO05D008519 7.3e-57 224.6 206 54.9
VMungo1215G1992 Vigna mungo HOM05D006972 ORTHO05D008519 1.2e-56 223.8 209 59.3
Gorai.001G199000 Gossypium raimondii HOM05D006972 ORTHO05D008519 1.6e-56 223.4 203 55.2
Nn5g30989 Nelumbo nucifera HOM05D006972 ORTHO05D008519 3.1e-55 219.2 251 49.4
Thecc.01G005600 Theobroma cacao HOM05D006972 ORTHO05D008519 5.2e-55 218.4 206 53.4
MBI05_g14344_MAGBIO Magnolia biondii HOM05D006972 ORTHO05D008519 8.9e-55 217.6 203 57.1
ECA238G2655 Erigeron canadensis HOM05D006972 ORTHO05D008519 2.6e-54 216.1 193 59.1
Ah.02g113990 Amaranthus hybridus HOM05D006972 ORTHO05D008519 3.4e-54 215.7 207 50.7
EL10Ac5g11121 Beta vulgaris HOM05D006972 ORTHO05D008519 4.4e-54 215.3 197 54.8
CAN.G354.14 Capsicum annuum HOM05D006972 ORTHO05D008519 7.5e-54 214.5 188 59.0
Lj2g0018473 Lotus japonicus HOM05D006972 ORTHO05D008519 7.5e-54 214.5 183 62.3
AUR62021571 Chenopodium quinoa HOM05D006972 ORTHO05D008519 1.3e-53 213.8 198 54.5
Medtr5g024200 Medicago truncatula HOM05D006972 ORTHO05D008519 2.2e-53 213.0 177 65.0
Zm00001eb002450 Zea mays HOM05D006972 ORTHO05D008519 2.9e-53 212.6 190 57.9
ATR0807G046 Amborella trichopoda HOM05D006972 ORTHO05D008519 3.7e-53 212.2 197 55.8
HPP92_026034 Vanilla planifolia HOM05D006972 ORTHO05D008519 6.4e-53 211.5 203 54.7
AUR62008520 Chenopodium quinoa HOM05D006972 ORTHO05D008519 2.4e-52 209.5 198 54.0
Haze_03661 Corylus avellana HOM05D006972 ORTHO05D008519 1.2e-51 207.2 170 64.7
PSO541G2195 Papaver somniferum HOM05D006972 ORTHO05D008519 1.6e-51 206.8 198 55.6
Hund19696 Selenicereus undatus HOM05D006972 ORTHO05D008519 3.5e-51 205.7 198 53.0
FvH4_1g10330 Fragaria vesca HOM05D006972 ORTHO05D008519 5.1e-50 201.8 169 63.3
FAN23G2574 Fragaria x ananassa HOM05D006972 ORTHO05D008519 6.6e-50 201.4 222 51.8
CDE04G1133 Ceratophyllum demersum HOM05D006972 ORTHO05D008519 5.6e-49 198.4 184 55.4
arahy.Tifrunner.gnm1.ann1.B19VPR Arachis hypogaea HOM05D006972 ORTHO05D008519 1.2e-48 197.2 173 60.7
arahy.Tifrunner.gnm1.ann1.K20VQB Arachis hypogaea HOM05D006972 ORTHO05D008519 1.2e-48 197.2 173 60.7
PSO675G3277 Papaver somniferum HOM05D006972 ORTHO05D008519 2.4e-47 193.0 184 54.9
SGA_v2.0_scaffold132G34519 Striga asiatica HOM05D006972 ORTHO05D008519 5.2e-47 191.8 186 56.5
Sc03g0003950 Simmondsia chinensis HOM05D006972 ORTHO05D008519 5.8e-46 188.3 170 57.6
COL.COLO4_24144 Corchorus olitorius HOM05D006972 ORTHO05D008519 2.9e-45 186.0 184 53.3
RcHm_v2.0_Chr1g0346531 Rosa chinensis HOM05D006972 ORTHO05D008519 3.3e-41 172.6 154 60.4
RcHm_v2.0_Chr2g0090391 Rosa chinensis HOM05D006972 ORTHO05D008519 7.3e-41 171.4 154 59.7
Peaxi162Scf00122g02416 Petunia axillaris HOM05D006972 ORTHO05D008519 7.6e-38 161.4 108 72.2
unitig_747.g21812 Utricularia gibba HOM05D006972 ORTHO05D008519 8.4e-37 157.9 220 44.1
MD15G1231300 Malus domestica HOM05D006972 ORTHO05D008519 1.9e-36 156.8 106 67.0
FAN26G0227 Fragaria x ananassa HOM05D006972 ORTHO05D008519 4.2e-36 155.6 169 53.8
Os03g0130750 Oryza sativa ssp. japonica HOM05D006972 ORTHO05D008519 1.6e-35 153.7 113 63.7
Mapoly0114s0024 Marchantia polymorpha HOM05D006972 ORTHO05D008519 2.3e-34 149.8 220 42.3
FAN28G2862 Fragaria x ananassa HOM05D006972 ORTHO05D008519 3.9e-34 149.1 110 70.0
Sopen03g005970 Solanum pennellii HOM05D006972 ORTHO05D008519 3.0e-26 122.9 119 56.3
SMO352G0055 Selaginella moellendorffii HOM05D006972 ORTHO05D008519 3.9e-26 122.5 148 46.6
CANSAT35G0485 Cannabis sativa HOM05D006972 ORTHO05D008519 2.1e-24 116.7 88 63.6
RcHm_v2.0_Chr5g0047551 Rosa chinensis HOM05D006972 ORTHO05D008519 4.0e-23 112.5 77 67.5
Lsat_1_v5_gn_5_10160 Lactuca sativa HOM05D006972 ORTHO05D008519 5.3e-23 112.1 88 65.9
RcHm_v2.0_Chr5g0015201 Rosa chinensis HOM05D006972 ORTHO05D008519 9.0e-23 111.3 70 72.9
Cre16.g682050 Chlamydomonas reinhardtii HOM05D006972 ORTHO05D008519 1.5e-22 110.5 191 37.7
MCO16G109 Micromonas commoda HOM05D006972 ORTHO05D008519 7.9e-19 98.2 193 34.2
Glyma.11G085800 Glycine max HOM05D006972 ORTHO05D008519 1.0e-18 97.8 143 43.4
SMO147G0393 Selaginella moellendorffii HOM05D006972 ORTHO05D008519 1.1e-17 94.4 147 37.4
Pp3c7_7150 Physcomitrium patens HOM05D006972 ORTHO05D008519 5.7e-17 92.0 194 30.4
Actinidia22899 Actinidia chinensis HOM05D006972 ORTHO05D008519 9.6e-17 91.3 76 56.6
MD15G1231400 Malus domestica HOM05D006972 ORTHO05D008519 1.6e-16 90.5 86 58.1
Pp3c11_19180 Physcomitrium patens HOM05D006972 ORTHO05D008519 2.1e-16 90.1 194 30.4
Lsat_1_v5_gn_1_125281 Lactuca sativa HOM05D006972 ORTHO05D008519 1.8e-15 87.0 59 67.8
Mapoly0023s0154 Marchantia polymorpha HOM05D006972 ORTHO05D008519 5.3e-15 85.5 186 30.6
PRCOL_00004399 Prasinoderma coloniale HOM05D006972 ORTHO05D008519 5.0e-13 79.0 149 35.6
CBR_g19759 Chara braunii HOM05D006972 ORTHO05D008519 4.2e-12 75.9 144 35.4
Lsat_1_v5_gn_8_30121 Lactuca sativa HOM05D006972 ORTHO05D008519 5.1e-10 68.9 61 62.3
arahy.Tifrunner.gnm1.ann1.J6JT3S Arachis hypogaea HOM05D006972 ORTHO05D008519 3.7e-08 62.8 96 42.7
arahy.Tifrunner.gnm1.ann1.9GY3HT Arachis hypogaea HOM05D006972 ORTHO05D008519 4.5e-06 55.8 87 41.4


User provided reference genes

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