Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s2848 Capsella rubella HOM05D001343 ORTHO05D007223 0.0e+00 1142.1 773 100.0
AL8G45590 Arabidopsis lyrata HOM05D001343 ORTHO05D007223 5.7e-248 861.3 790 81.0
Sp2g30660 Schrenkiella parvula HOM05D001343 ORTHO05D007223 1.2e-242 843.6 782 82.0
AT5G66030 Arabidopsis thaliana HOM05D001343 ORTHO05D007223 4.7e-242 841.6 796 75.9
Thhalv10003686m.g Eutrema salsugineum HOM05D001343 ORTHO05D007223 1.0e-241 840.5 777 77.0
BcaB04g20130 Brassica carinata HOM05D001343 ORTHO05D002008 2.7e-234 815.8 770 73.8
BolC9t54101H Brassica oleracea HOM05D001343 ORTHO05D002008 3.8e-228 795.4 742 78.6
A09p10220 Brassica napus HOM05D001343 ORTHO05D002008 5.0e-228 795.0 735 78.8
BraA09t36667Z Brassica rapa HOM05D001343 ORTHO05D002008 7.2e-227 791.2 742 78.2
BcaC04g23105 Brassica carinata HOM05D001343 ORTHO05D002008 3.7e-223 778.9 735 77.6
C09p12110 Brassica napus HOM05D001343 ORTHO05D002008 4.8e-223 778.5 735 77.6
THA.LOC104826465 Tarenaya hassleriana HOM05D001343 ORTHO05D007223 1.9e-190 670.2 769 62.9
Duzib187G0329 Durio zibethinus HOM05D001343 ORTHO05D007223 1.4e-177 627.5 775 60.3
Duzib147G0638 Durio zibethinus HOM05D001343 ORTHO05D007223 2.6e-176 623.2 772 61.3
CARHR281730 Cardamine hirsuta HOM05D001343 ORTHO05D007223 1.6e-173 614.0 423 89.6
Prupe.7G179600 Prunus persica HOM05D001343 ORTHO05D007223 3.3e-171 606.3 767 61.5
GSVIVG01003839001 Vitis vinifera HOM05D001343 ORTHO05D007223 3.6e-170 602.8 745 60.8
Ciclev10024922m.g Citrus clementina HOM05D001343 ORTHO05D007223 1.4e-169 600.9 779 61.7
QL06p053829 Quercus lobata HOM05D001343 ORTHO05D007223 4.9e-167 592.4 799 62.5
Atru.chr3.956 Acer truncatum HOM05D001343 ORTHO05D007223 8.4e-167 591.7 767 55.7
Lalb_Chr05g0211921 Lupinus albus HOM05D001343 ORTHO05D007223 3.2e-166 589.7 769 57.6
QL06p052741 Quercus lobata HOM05D001343 ORTHO05D007223 2.7e-165 586.6 833 53.3
Actinidia17384 Actinidia chinensis HOM05D001343 ORTHO05D007223 3.5e-165 586.3 774 55.8
CiPaw.07G004100 Carya illinoinensis HOM05D001343 ORTHO05D007223 1.8e-164 583.9 795 57.4
FAN23G1852 Fragaria x ananassa HOM05D001343 ORTHO05D007223 1.6e-162 577.4 787 58.7
Phvul.002G114800 Phaseolus vulgaris HOM05D001343 ORTHO05D007223 4.8e-162 575.9 768 56.4
Haze_03675 Corylus avellana HOM05D001343 ORTHO05D007223 8.1e-162 575.1 801 53.7
CANSAT25G1453 Cannabis sativa HOM05D001343 ORTHO05D007223 2.0e-160 570.5 742 55.5
CsaV3_3G000380 Cucumis sativus L. HOM05D001343 ORTHO05D007223 2.0e-160 570.5 788 58.4
CANSAT25G0854 Cannabis sativa HOM05D001343 ORTHO05D007223 9.9e-160 568.2 742 55.7
Hma1.2p1_0300F.1_g118160 Hydrangea macrophylla HOM05D001343 ORTHO05D007223 9.9e-160 568.2 762 54.2
Thecc.01G007100 Theobroma cacao HOM05D001343 ORTHO05D007223 6.4e-159 565.5 785 58.0
FAN28G2189 Fragaria x ananassa HOM05D001343 ORTHO05D007223 1.9e-158 563.9 787 59.8
Dinv08526 Davidia involucrata HOM05D001343 ORTHO05D007223 1.6e-157 560.8 791 50.2
Dinv40173 Davidia involucrata HOM05D001343 ORTHO05D007223 2.7e-157 560.1 613 66.4
MD15G1233300 Malus domestica HOM05D001343 ORTHO05D007223 6.0e-157 558.9 789 50.6
FAN19G1061 Fragaria x ananassa HOM05D001343 ORTHO05D007223 3.0e-156 556.6 791 58.4
FvH4_1g10521 Fragaria vesca HOM05D001343 ORTHO05D007223 1.5e-155 554.3 790 58.0
Sed0023593 Sechium edule HOM05D001343 ORTHO05D007223 8.2e-154 548.5 787 55.8
Gohir.A10G099100 Gossypium hirsutum HOM05D001343 ORTHO05D007223 1.5e-152 544.3 779 54.8
TPR.G25095 Trifolium pratense HOM05D001343 ORTHO05D007223 5.8e-152 542.3 771 57.5
ClCG10G000340 Citrullus lanatus HOM05D001343 ORTHO05D007223 2.9e-151 540.0 800 56.1
TWI09G1271 Tripterygium wilfordii HOM05D001343 ORTHO05D007223 2.3e-148 530.4 802 53.0
Medtr5g023770 Medicago truncatula HOM05D001343 ORTHO05D007223 5.1e-148 529.3 781 58.9
MD02G1119300 Malus domestica HOM05D001343 ORTHO05D007223 6.7e-148 528.9 788 52.5
Sabra05G0082500 Salix brachista HOM05D001343 ORTHO05D007223 8.2e-146 521.9 775 51.0
PSO210G1702 Papaver somniferum HOM05D001343 ORTHO05D007223 4.5e-144 516.2 784 52.6
Manes.02G112700 Manihot esculenta HOM05D001343 ORTHO05D007223 7.7e-144 515.4 786 56.6
TAR381G1734 Trochodendron aralioides HOM05D001343 ORTHO05D007223 1.0e-143 515.0 754 52.5
Gohir.D10G089000 Gossypium hirsutum HOM05D001343 ORTHO05D007223 2.9e-143 513.5 779 53.4
Gorai.011G097900 Gossypium raimondii HOM05D001343 ORTHO05D007223 1.9e-142 510.8 779 53.1
COL.COLO4_22537 Corchorus olitorius HOM05D001343 ORTHO05D007223 2.5e-142 510.4 785 54.9
Potri.005G099800 Populus trichocarpa HOM05D001343 ORTHO05D007223 2.7e-141 506.9 774 49.7
Hund03615 Selenicereus undatus HOM05D001343 ORTHO05D007223 6.7e-140 502.3 764 50.3
Glyma.01G159900 Glycine max HOM05D001343 ORTHO05D007223 2.0e-139 500.7 771 53.4
Solyc02g082840.3 Solanum lycopersicum HOM05D001343 ORTHO05D007223 6.3e-138 495.7 756 56.5
Nitab4.5_0000702g0060 Nicotiana tabacum HOM05D001343 ORTHO05D007223 9.1e-137 491.9 792 48.2
vmacro20524 Vaccinium macrocarpon HOM05D001343 ORTHO05D007223 1.2e-136 491.5 736 54.6
Sopen02g027640 Solanum pennellii HOM05D001343 ORTHO05D007223 3.4e-136 490.0 790 55.1
SGA_v2.0_scaffold12G05990 Striga asiatica HOM05D001343 ORTHO05D007223 1.0e-135 488.4 775 46.6
ATR0661G538 Amborella trichopoda HOM05D001343 ORTHO05D007223 2.9e-135 486.9 752 52.7
Aqoxy5G01035 Aquilegia oxysepala HOM05D001343 ORTHO05D007223 3.8e-135 486.5 780 46.2
PGR083G0487 Punica granatum HOM05D001343 ORTHO05D007223 3.2e-134 483.4 776 50.6
PSO170G3735 Papaver somniferum HOM05D001343 ORTHO05D007223 5.5e-134 482.6 773 51.6
HanXRQChr14g0442391 Helianthus annuus HOM05D001343 ORTHO05D007223 7.2e-134 482.3 789 49.3
MELO3C013733.2 Cucumis melo HOM05D001343 ORTHO05D007223 7.9e-133 478.8 795 52.8
MSTRG.15594 Avicennia marina HOM05D001343 ORTHO05D007223 1.4e-132 478.0 753 51.1
Nn5g30956 Nelumbo nucifera HOM05D001343 ORTHO05D007223 5.1e-132 476.1 746 52.9
Peaxi162Scf01446g00025 Petunia axillaris HOM05D001343 ORTHO05D007223 6.7e-132 475.7 801 46.1
Lj2g0004784 Lotus japonicus HOM05D001343 ORTHO05D007223 8.8e-132 475.3 756 53.0
Atru.chr3.968 Acer truncatum HOM05D001343 ORTHO05D007223 4.4e-131 473.0 767 49.2
Cpa.g.sc55.186 Carica papaya HOM05D001343 ORTHO05D007223 1.3e-130 471.5 788 48.1
arahy.Tifrunner.gnm1.ann1.AU9Y8G Arachis hypogaea HOM05D001343 ORTHO05D007223 2.8e-130 470.3 784 52.9
arahy.Tifrunner.gnm1.ann1.SLQH96 Arachis hypogaea HOM05D001343 ORTHO05D007223 2.8e-130 470.3 784 52.9
ECA238G2213 Erigeron canadensis HOM05D001343 ORTHO05D007223 9.1e-129 465.3 799 46.7
CSS0043948 Camellia sinensis var. sinensis HOM05D001343 ORTHO05D007223 2.0e-128 464.2 772 52.3
CAN.G890.76 Capsicum annuum HOM05D001343 ORTHO05D007223 2.2e-127 460.7 754 47.3
Glyma.11G084200 Glycine max HOM05D001343 ORTHO05D007223 8.8e-124 448.7 771 51.5
EL10Ac6g15468 Beta vulgaris HOM05D001343 ORTHO05D007223 3.3e-123 446.8 790 45.6
SalBow5G5069 Salvia bowleyana HOM05D001343 ORTHO05D007223 4.1e-121 439.9 703 50.9
Eucgr.J02528 Eucalyptus grandis HOM05D001343 ORTHO05D007223 4.5e-120 436.4 790 51.8
Manes.01G153700 Manihot esculenta HOM05D001343 ORTHO05D007223 2.2e-119 434.1 649 59.6
Ca_24963_v3 Cicer arietinum L. HOM05D001343 ORTHO05D007223 1.2e-115 421.8 794 50.3
Cc07_g11650 Coffea canephora HOM05D001343 ORTHO05D007223 2.0e-115 421.0 801 53.1
Actinidia22910 Actinidia chinensis HOM05D001343 ORTHO05D007223 3.4e-115 420.2 779 48.1
VMungo1215G1031 Vigna mungo HOM05D001343 ORTHO05D007223 7.5e-115 419.1 786 48.7
Os07g0472500 Oryza sativa ssp. japonica HOM05D001343 ORTHO05D007223 8.3e-114 415.6 747 47.9
AUR62003379 Chenopodium quinoa HOM05D001343 ORTHO05D007223 1.8e-113 414.5 758 47.5
Sc16g0001690 Simmondsia chinensis HOM05D001343 ORTHO05D007223 1.0e-111 408.7 751 46.3
Zm00001eb104860 Zea mays HOM05D001343 ORTHO05D007223 2.9e-111 407.1 772 43.0
Nitab4.5_0002967g0060 Nicotiana tabacum HOM05D001343 ORTHO05D007223 5.5e-110 402.9 797 41.4
Lj4A232G45 Lonicera japonica HOM05D001343 ORTHO05D007223 1.0e-108 398.7 724 54.1
Lsat_1_v5_gn_2_74420 Lactuca sativa HOM05D001343 ORTHO05D007223 4.0e-108 396.7 792 46.6
Migut.L00734 Erythranthe guttata HOM05D001343 ORTHO05D007223 9.8e-107 392.1 799 47.1
Ah.03g148390 Amaranthus hybridus HOM05D001343 ORTHO05D007223 7.7e-104 382.5 776 42.8
AUR62029449 Chenopodium quinoa HOM05D001343 ORTHO05D007223 3.6e-101 373.6 757 42.9
HPP92_003502 Vanilla planifolia HOM05D001343 ORTHO05D007223 2.6e-99 367.5 797 43.8
Mapoly0179s0009 Marchantia polymorpha HOM05D001343 ORTHO05D007223 1.0e-92 345.5 777 35.6
unitig_88.g27773 Utricularia gibba HOM05D001343 ORTHO05D007223 1.4e-89 335.1 738 38.2
AagrBONN_evm.TU.Sc2ySwM_344.163 Anthoceros agrestis HOM05D001343 ORTHO05D007223 9.2e-81 305.8 675 36.6
DCAR_011583 Daucus carota HOM05D001343 ORTHO05D007223 5.8e-75 286.6 772 39.2
RcHm_v2.0_Chr2g0097461 Rosa chinensis HOM05D001343 ORTHO05D007223 1.7e-71 275.0 546 55.7
SEGI_12448 Sequoiadendron giganteum HOM05D001343 ORTHO05D007223 2.3e-71 274.6 789 36.0
Pp3c20_18210 Physcomitrium patens HOM05D001343 ORTHO05D007223 6.6e-71 273.1 818 30.4
CDE06G1375 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 3.1e-68 264.2 278 56.1
RcHm_v2.0_Chr2g0097581 Rosa chinensis HOM05D001343 ORTHO05D007223 3.4e-67 260.8 547 54.8
CDE07G1064 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 1.6e-64 251.9 259 56.8
Psat2g150480 Pisum sativum HOM05D001343 ORTHO05D007223 7.8e-64 249.6 202 69.8
RcHm_v2.0_Chr2g0097451 Rosa chinensis HOM05D001343 ORTHO05D007223 2.3e-63 248.1 198 73.2
Pp3c23_9770 Physcomitrium patens HOM05D001343 ORTHO05D007223 5.6e-62 243.4 684 39.3
Migut.L00811 Erythranthe guttata HOM05D001343 ORTHO05D007223 3.1e-44 184.5 140 76.4
Psat2g150520 Pisum sativum HOM05D001343 ORTHO05D007223 6.5e-42 176.8 485 50.7
QL06p053793 Quercus lobata HOM05D001343 ORTHO05D007223 6.5e-42 176.8 144 75.7
Actinidia26548 Actinidia chinensis HOM05D001343 ORTHO05D007223 3.5e-40 171.0 148 64.2
RcHm_v2.0_Chr2g0097571 Rosa chinensis HOM05D001343 ORTHO05D007223 5.1e-39 167.2 123 77.2
Rhsim10G0198000 Rhododendron simsii HOM05D001343 ORTHO05D007223 1.2e-35 156.0 366 41.3
arahy.Tifrunner.gnm1.ann1.ISY8LN Arachis hypogaea HOM05D001343 ORTHO05D007223 2.1e-32 145.2 177 50.3
arahy.Tifrunner.gnm1.ann1.9PSP05 Arachis hypogaea HOM05D001343 ORTHO05D007223 8.7e-31 139.8 181 52.5
CBR_g34809 Chara braunii HOM05D000019 ORTHO05D000002 8.7e-31 139.8 351 34.2
CDE07G1287 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 2.5e-30 138.3 285 49.1
AL472U10010 Arabidopsis lyrata HOM05D001343 ORTHO05D007223 9.0e-28 129.8 200 57.0
Aa31LG1G14520 Aethionema arabicum HOM05D001343 ORTHO05D007223 2.0e-27 128.6 169 56.2
Migut.L00927 Erythranthe guttata HOM05D001343 ORTHO05D007223 2.2e-26 125.2 330 53.0
arahy.Tifrunner.gnm1.ann1.6P6C0I Arachis hypogaea HOM05D001343 ORTHO05D007223 4.8e-21 107.5 95 69.5
arahy.Tifrunner.gnm1.ann1.T78FCF Arachis hypogaea HOM05D001343 ORTHO05D007223 1.3e-18 99.4 79 72.2
HPP92_003508 Vanilla planifolia HOM05D001343 ORTHO05D007223 7.9e-16 90.1 56 87.5
QL06p052753 Quercus lobata HOM05D003687 ORTHO05D007223 6.7e-15 87.0 55 81.8
Cpa.g.sc1414.4 Carica papaya HOM05D001343 ORTHO05D007223 9.7e-14 83.2 130 45.4
arahy.Tifrunner.gnm1.ann1.QS1PDB Arachis hypogaea HOM05D001343 ORTHO05D007223 7.0e-12 77.0 80 48.8
RcHm_v2.0_Chr6g0253501 Rosa chinensis HOM05D001343 ORTHO05D007223 2.9e-10 71.6 123 43.1
Oeu032010.1 Olea europaea HOM05D001343 ORTHO05D007223 6.5e-10 70.5 180 35.6
Lsat_1_v5_gn_4_84780 Lactuca sativa HOM05D003172 ORTHO05D007223 4.0e-07 61.2 52 71.2
CBR_g34810 Chara braunii HOM05D043006 ORTHO05D000353 8.8e-07 60.1 151 32.5
Cre09.g398808 Chlamydomonas reinhardtii HOM05D001343 ORTHO05D007223 8.8e-07 60.1 71 42.3


User provided reference genes

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