Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s2837 Capsella rubella HOM05D005052 ORTHO05D006226 1.8e-251 872.1 441 100.0
AL8G45470 Arabidopsis lyrata HOM05D005052 ORTHO05D006226 3.6e-231 804.7 444 93.7
CARHR281630 Cardamine hirsuta HOM05D005052 ORTHO05D006226 3.6e-231 804.7 444 92.8
AT5G66120 Arabidopsis thaliana HOM05D005052 ORTHO05D006226 2.3e-230 802.0 446 93.0
Thhalv10004219m.g Eutrema salsugineum HOM05D005052 ORTHO05D006226 7.3e-224 780.4 447 89.5
Sp2g30570 Schrenkiella parvula HOM05D005052 ORTHO05D006226 1.2e-221 773.1 446 88.8
BcaB04g20124 Brassica carinata HOM05D005052 ORTHO05D006226 4.3e-216 754.6 442 88.2
BcaC04g23113 Brassica carinata HOM05D005052 ORTHO05D006226 3.6e-215 751.5 443 87.4
C09p12030 Brassica napus HOM05D005052 ORTHO05D006226 3.6e-215 751.5 443 87.4
BraA09t36659Z Brassica rapa HOM05D005052 ORTHO05D006226 3.6e-215 751.5 443 87.4
A09p10150 Brassica napus HOM05D005052 ORTHO05D006226 6.2e-215 750.7 443 87.4
BolC9t54093H Brassica oleracea HOM05D005052 ORTHO05D006226 5.2e-214 747.7 443 87.4
Aa31LG1G14600 Aethionema arabicum HOM05D005052 ORTHO05D006226 3.2e-203 711.8 444 81.8
THA.LOC104821339 Tarenaya hassleriana HOM05D005052 ORTHO05D006226 1.1e-200 703.4 436 81.4
Cpa.g.sc6.286 Carica papaya HOM05D005052 ORTHO05D006226 1.1e-192 676.8 449 78.0
CiPaw.07G061100 Carya illinoinensis HOM05D005052 ORTHO05D006226 5.6e-192 674.5 452 76.8
TWI53G1960 Tripterygium wilfordii HOM05D005052 ORTHO05D006226 9.6e-192 673.7 426 79.3
Sopen02g028370 Solanum pennellii HOM05D005052 ORTHO05D006226 4.8e-191 671.4 415 81.4
Gohir.D12G058900 Gossypium hirsutum HOM05D005052 ORTHO05D006226 8.1e-191 670.6 446 76.9
MELO3C013755.2 Cucumis melo HOM05D005052 ORTHO05D006226 1.4e-190 669.8 400 82.8
CsaV3_3G000670 Cucumis sativus L. HOM05D005052 ORTHO05D006226 1.4e-190 669.8 400 83.0
Solyc02g083590.3 Solanum lycopersicum HOM05D005052 ORTHO05D006226 1.8e-190 669.5 415 81.4
Cc07_g11060 Coffea canephora HOM05D005052 ORTHO05D006226 2.4e-190 669.1 410 81.0
Ca_24920_v3 Cicer arietinum L. HOM05D005052 ORTHO05D006226 4.0e-190 668.3 435 77.2
COL.COLO4_22462 Corchorus olitorius HOM05D005052 ORTHO05D006226 4.0e-190 668.3 447 77.0
Eucgr.J02467 Eucalyptus grandis HOM05D005052 ORTHO05D006226 5.3e-190 667.9 452 74.8
Gohir.A12G058900 Gossypium hirsutum HOM05D005052 ORTHO05D006226 1.2e-189 666.8 446 76.7
Sabra05G0090900 Salix brachista HOM05D005052 ORTHO05D006226 1.2e-189 666.8 449 75.9
CiPaw.08G130500 Carya illinoinensis HOM05D005052 ORTHO05D006226 2.0e-189 666.0 425 78.4
HanXRQChr13g0424561 Helianthus annuus HOM05D005052 ORTHO05D006226 2.0e-189 666.0 445 75.7
CANSAT25G2560 Cannabis sativa HOM05D005052 ORTHO05D006226 2.6e-189 665.6 397 82.9
VMungo1215G2918 Vigna mungo HOM05D005052 ORTHO05D006226 2.6e-189 665.6 394 83.5
GSVIVG01018732001 Vitis vinifera HOM05D005052 ORTHO05D006226 3.4e-189 665.2 455 74.9
Gorai.008G062200 Gossypium raimondii HOM05D005052 ORTHO05D006226 4.5e-189 664.8 445 76.4
Actinidia22954 Actinidia chinensis HOM05D005052 ORTHO05D006226 9.9e-189 663.7 368 87.2
QL06p051082 Quercus lobata HOM05D005052 ORTHO05D006226 9.9e-189 663.7 454 75.1
PGSC0003DMG400003582 Solanum tuberosum HOM05D005052 ORTHO05D006226 1.3e-188 663.3 428 78.5
ClCG10G000590 Citrullus lanatus HOM05D005052 ORTHO05D006226 1.7e-188 662.9 424 78.8
Peaxi162Scf00328g00523 Petunia axillaris HOM05D005052 ORTHO05D006226 1.7e-188 662.9 408 81.6
Lalb_Chr05g0212261 Lupinus albus HOM05D005052 ORTHO05D006226 2.2e-188 662.5 436 76.6
Nitab4.5_0008943g0020 Nicotiana tabacum HOM05D005052 ORTHO05D006226 2.2e-188 662.5 394 83.0
MSTRG.2728 Avicennia marina HOM05D005052 ORTHO05D006226 2.9e-188 662.1 428 78.0
CAN.G1274.31 Capsicum annuum HOM05D005052 ORTHO05D006226 3.8e-188 661.8 411 79.8
MD15G1242600 Malus domestica HOM05D005052 ORTHO05D006226 3.8e-188 661.8 454 74.0
Potri.005G110900 Populus trichocarpa HOM05D005052 ORTHO05D006226 3.8e-188 661.8 447 76.5
Nitab4.5_0001892g0080 Nicotiana tabacum HOM05D005052 ORTHO05D006226 4.9e-188 661.4 394 82.7
SalBow3G4284 Salvia bowleyana HOM05D005052 ORTHO05D006226 4.9e-188 661.4 441 77.1
Psat2g153160 Pisum sativum HOM05D005052 ORTHO05D006226 6.4e-188 661.0 447 75.2
Prupe.7G171600 Prunus persica HOM05D005052 ORTHO05D006226 6.4e-188 661.0 435 76.6
TPR.G10542 Trifolium pratense HOM05D005052 ORTHO05D006226 6.4e-188 661.0 439 75.2
PGR102G0465 Punica granatum HOM05D005052 ORTHO05D006226 1.9e-187 659.4 443 76.3
Sed0003793 Sechium edule HOM05D005052 ORTHO05D006226 1.9e-187 659.4 424 78.5
Duzib147G0491 Durio zibethinus HOM05D005052 ORTHO05D006226 3.2e-187 658.7 445 75.3
Atru.chr3.855 Acer truncatum HOM05D005052 ORTHO05D006226 4.2e-187 658.3 389 83.0
Glyma.11G078700 Glycine max HOM05D005052 ORTHO05D006226 4.2e-187 658.3 393 81.9
Medtr5g022580 Medicago truncatula HOM05D005052 ORTHO05D006226 4.2e-187 658.3 429 77.4
Phvul.002G106700 Phaseolus vulgaris HOM05D005052 ORTHO05D006226 4.2e-187 658.3 445 75.7
Dinv40116 Davidia involucrata HOM05D005052 ORTHO05D006226 5.4e-187 657.9 458 73.4
arahy.Tifrunner.gnm1.ann1.1KVD1S Arachis hypogaea HOM05D005052 ORTHO05D006226 7.1e-187 657.5 443 77.4
arahy.Tifrunner.gnm1.ann1.PYN71E Arachis hypogaea HOM05D005052 ORTHO05D006226 7.1e-187 657.5 443 77.4
TWI09G1579 Tripterygium wilfordii HOM05D005052 ORTHO05D006226 7.1e-187 657.5 423 78.3
RcHm_v2.0_Chr2g0099021 Rosa chinensis HOM05D005052 ORTHO05D006226 2.1e-186 656.0 443 75.2
SGA_v2.0_scaffold94G28549 Striga asiatica HOM05D005052 ORTHO05D006226 2.7e-186 655.6 366 87.2
ECA240G3065 Erigeron canadensis HOM05D005052 ORTHO05D006226 3.5e-186 655.2 444 75.5
PSO541G6199 Papaver somniferum HOM05D005052 ORTHO05D006226 3.5e-186 655.2 387 82.9
Thecc.01G014600 Theobroma cacao HOM05D005052 ORTHO05D006226 3.5e-186 655.2 451 74.7
Lalb_Chr09g0321611 Lupinus albus HOM05D005052 ORTHO05D006226 6.0e-186 654.4 437 76.7
Sc03g0003700 Simmondsia chinensis HOM05D005052 ORTHO05D006226 6.0e-186 654.4 441 75.3
FAN19G0738 Fragaria x ananassa HOM05D005052 ORTHO05D006226 2.3e-185 652.5 441 74.8
Migut.C00533 Erythranthe guttata HOM05D005052 ORTHO05D006226 3.0e-185 652.1 442 77.1
FAN28G0876 Fragaria x ananassa HOM05D005052 ORTHO05D006226 3.0e-185 652.1 441 74.4
Glyma.01G164300 Glycine max HOM05D005052 ORTHO05D006226 3.9e-185 651.7 394 81.7
Oeu048477.1 Olea europaea HOM05D005052 ORTHO05D006226 1.1e-184 650.2 445 74.4
PSO675G6089 Papaver somniferum HOM05D005052 ORTHO05D006226 1.5e-184 649.8 387 82.4
FAN23G2381 Fragaria x ananassa HOM05D005052 ORTHO05D006226 1.9e-184 649.4 401 80.3
vmacro18426 Vaccinium macrocarpon HOM05D005052 ORTHO05D006226 2.5e-184 649.0 433 74.8
FvH4_1g11430 Fragaria vesca HOM05D005052 ORTHO05D006226 3.3e-184 648.7 441 74.1
DCAR_022909 Daucus carota HOM05D005052 ORTHO05D006226 5.6e-184 647.9 434 76.7
Lj2g0011110 Lotus japonicus HOM05D005052 ORTHO05D006226 5.6e-184 647.9 390 82.3
Cfa007001 Carpinus fangiana HOM05D005052 ORTHO05D006226 1.3e-183 646.7 454 74.2
Nn5g28565 Nelumbo nucifera HOM05D005052 ORTHO05D006226 2.8e-183 645.6 387 82.7
AUR62003338 Chenopodium quinoa HOM05D005052 ORTHO05D006226 3.7e-183 645.2 446 74.7
Lj4A222T51 Lonicera japonica HOM05D005052 ORTHO05D006226 4.8e-183 644.8 467 72.8
Nn1g06262 Nelumbo nucifera HOM05D005052 ORTHO05D006226 8.1e-183 644.0 391 81.8
FAN26G3360 Fragaria x ananassa HOM05D005052 ORTHO05D006226 1.1e-182 643.7 453 73.1
Gorai.007G192400 Gossypium raimondii HOM05D005052 ORTHO05D006226 1.4e-182 643.3 450 73.3
Haze_03731 Corylus avellana HOM05D005052 ORTHO05D006226 2.4e-182 642.5 459 72.5
Rhsim08G0032100 Rhododendron simsii HOM05D005052 ORTHO05D006226 4.0e-182 641.7 386 80.1
TAR381G1626 Trochodendron aralioides HOM05D005052 ORTHO05D006226 4.0e-182 641.7 391 82.1
Hund16503 Selenicereus undatus HOM05D005052 ORTHO05D006226 6.9e-182 641.0 397 80.1
MBI05_g23388_MAGBIO Magnolia biondii HOM05D005052 ORTHO05D006226 1.3e-180 636.7 445 72.6
ATR0712G043 Amborella trichopoda HOM05D005052 ORTHO05D006226 1.4e-179 633.3 405 77.8
Gohir.D11G180500 Gossypium hirsutum HOM05D005052 ORTHO05D006226 2.5e-179 632.5 379 82.3
AUR62029500 Chenopodium quinoa HOM05D005052 ORTHO05D006226 3.2e-179 632.1 454 73.6
Os09g0539100 Oryza sativa ssp. japonica HOM05D005052 ORTHO05D006226 5.5e-179 631.3 385 81.8
Aqoxy4G02022 Aquilegia oxysepala HOM05D005052 ORTHO05D006226 4.6e-178 628.2 368 83.4
vmacro22193 Vaccinium macrocarpon HOM05D005052 ORTHO05D006226 1.0e-177 627.1 464 69.6
Zm00001eb103800 Zea mays HOM05D005052 ORTHO05D006226 5.6e-176 621.3 390 79.5
Gohir.A11G173500 Gossypium hirsutum HOM05D005052 ORTHO05D006226 6.2e-175 617.8 424 74.3
Pp3c13_24150 Physcomitrium patens HOM05D005052 ORTHO05D006226 1.4e-174 616.7 387 78.0
HPP92_025914 Vanilla planifolia HOM05D005052 ORTHO05D006226 3.8e-172 608.6 441 68.5
HPP92_025909 Vanilla planifolia HOM05D005052 ORTHO05D006226 1.2e-170 603.6 441 68.0
Ciclev10025711m.g Citrus clementina HOM05D005052 ORTHO05D006226 9.7e-168 594.0 447 70.2
Mapoly0031s0094 Marchantia polymorpha HOM05D005052 ORTHO05D006226 1.8e-166 589.7 387 73.9
CSS0012363 Camellia sinensis var. sinensis HOM05D005052 ORTHO05D006226 4.1e-166 588.6 328 87.2
AagrBONN_evm.TU.Sc2ySwM_340.387 Anthoceros agrestis HOM05D005052 ORTHO05D006226 1.5e-165 586.6 387 73.9
SMO228G0049 Selaginella moellendorffii HOM05D005052 ORTHO05D006226 5.1e-161 571.6 364 75.0
DCAR_004732 Daucus carota HOM05D005052 ORTHO05D006226 1.4e-155 553.5 412 68.4
Actinidia28717 Actinidia chinensis HOM05D005052 ORTHO05D006226 1.6e-154 550.1 392 73.2
CBR_g10969 Chara braunii HOM05D005052 ORTHO05D006226 1.4e-153 547.0 382 68.8
Zm00001eb331970 Zea mays HOM05D005052 ORTHO05D006226 1.4e-153 547.0 407 70.3
Lsat_1_v5_gn_3_125660 Lactuca sativa HOM05D005052 ORTHO05D006226 9.7e-152 540.8 417 68.6
Cre08.g368950 Chlamydomonas reinhardtii HOM05D005052 ORTHO05D006226 1.4e-147 526.9 371 68.7
Actinidia17421 Actinidia chinensis HOM05D005052 ORTHO05D006226 4.7e-146 521.9 287 88.2
EL10Ac6g15523 Beta vulgaris HOM05D005052 ORTHO05D006226 1.4e-142 510.4 461 59.4
MCO01G625 Micromonas commoda HOM05D005052 ORTHO05D006226 7.7e-141 504.6 358 67.3
CDE04G1415 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 1.0e-137 494.2 287 82.6
PRCOL_00000314 Prasinoderma coloniale HOM05D005052 ORTHO05D006226 9.4e-131 471.1 363 63.9
Hma1.2p1_0315F.1_g122330 Hydrangea macrophylla HOM05D005052 ORTHO05D006226 6.8e-129 464.9 367 66.5
Manes.02G107200 Manihot esculenta HOM05D005052 ORTHO05D006226 1.2e-128 464.2 333 73.3
Ah.03g149130 Amaranthus hybridus HOM05D005052 ORTHO05D006226 8.3e-127 458.0 328 72.9
SEGI_14262 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 8.6e-116 421.4 281 73.3
Dinv33661 Davidia involucrata HOM05D005052 ORTHO05D006226 5.6e-115 418.7 233 86.7
Hma1.2p1_2620F.1_g325580 Hydrangea macrophylla HOM05D005052 ORTHO05D006226 1.1e-107 394.4 442 53.2
CDE02G2775 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 3.6e-106 389.4 315 63.8
SEGI_08539 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 7.8e-93 345.1 224 71.9
CDE02G1558 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 4.6e-85 319.3 256 65.2
SGA_v2.0_scaffold273G46395 Striga asiatica HOM05D005052 ORTHO05D006226 4.8e-82 309.3 229 67.2
Lsat_1_v5_gn_0_46241 Lactuca sativa HOM05D005052 ORTHO05D006226 2.7e-77 293.5 299 47.8
TPR.G6592 Trifolium pratense HOM05D005052 ORTHO05D006226 2.0e-72 277.3 273 57.5
RcHm_v2.0_Chr2g0099011 Rosa chinensis HOM05D005052 ORTHO05D006226 7.6e-72 275.4 246 58.9
unitig_699.g19702 Utricularia gibba HOM05D005052 ORTHO05D006226 2.7e-69 266.9 161 80.1
Haze_27270 Corylus avellana HOM05D005052 ORTHO05D006226 2.3e-68 263.8 359 43.5
Cfa024476 Carpinus fangiana HOM05D003566 ORTHO05D126353 4.2e-54 216.5 336 42.3
Dinv33662 Davidia involucrata HOM05D005052 ORTHO05D006226 8.7e-52 208.8 210 58.1
unitig_699.g19703 Utricularia gibba HOM05D005052 ORTHO05D006226 9.0e-49 198.7 182 61.5
Rhsim07G0143100 Rhododendron simsii HOM05D005052 ORTHO05D006226 7.9e-45 185.7 184 57.6
SEGI_40904 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 1.5e-43 181.4 113 76.1
Ah.03g149140 Amaranthus hybridus HOM05D000441 ORTHO05D000340 1.0e-28 132.1 77 80.5
SEGI_17140 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 5.7e-27 126.3 83 69.9
SEGI_34573 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 5.7e-27 126.3 83 69.9
MD02G1126200 Malus domestica HOM05D005052 ORTHO05D006226 2.7e-24 117.5 129 51.2
MD14G1099300 Malus domestica HOM05D005052 ORTHO05D006226 2.7e-24 117.5 129 51.2
Rhsim07G0135500 Rhododendron simsii HOM05D005052 ORTHO05D006226 9.4e-22 109.0 73 71.2
DCAR_004721 Daucus carota HOM05D005052 ORTHO05D006226 4.7e-21 106.7 113 52.2
SEGI_22853 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 1.5e-19 101.7 69 68.1
CDE04G1456 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 5.4e-17 93.2 75 62.7
Rhsim07G0135600 Rhododendron simsii HOM05D005052 ORTHO05D339393 2.0e-08 64.7 37 73.0
CSS0040013 Camellia sinensis var. sinensis HOM05D005052 ORTHO05D006226 4.3e-06 57.0 33 72.7


User provided reference genes

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