Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s2827 Capsella rubella HOM05D003676 ORTHO05D004262 2.7e-164 582.0 316 100.0
AT5G66230 Arabidopsis thaliana HOM05D003676 ORTHO05D003783 6.1e-116 421.4 337 75.1
CARHR281500 Cardamine hirsuta HOM05D003676 ORTHO05D004262 1.6e-108 396.7 329 74.2
Thhalv10004614m.g Eutrema salsugineum HOM05D003676 ORTHO05D004262 1.1e-104 384.0 331 72.8
Aa31LG1G14730 Aethionema arabicum HOM05D003676 ORTHO05D004262 1.6e-95 353.6 336 67.9
BolC9t54086H Brassica oleracea HOM05D003676 ORTHO05D004262 1.2e-90 337.4 341 67.4
C09p11980 Brassica napus HOM05D003676 ORTHO05D004262 2.6e-90 336.3 340 67.6
A09p10110 Brassica napus HOM05D003676 ORTHO05D004262 1.1e-88 330.9 336 67.6
BraA09t36654Z Brassica rapa HOM05D003676 ORTHO05D004262 1.9e-88 330.1 340 67.1
Sp2g30470 Schrenkiella parvula HOM05D003676 ORTHO05D004262 2.4e-88 329.7 334 65.9
AL8G45300 Arabidopsis lyrata HOM05D003676 ORTHO05D004262 9.6e-77 291.2 220 78.2
Dinv40087 Davidia involucrata HOM05D003676 ORTHO05D004262 1.7e-65 253.8 363 51.2
Duzib187G0981 Durio zibethinus HOM05D003676 ORTHO05D004262 4.2e-64 249.2 382 47.6
AL5G31630 Arabidopsis lyrata HOM05D003676 ORTHO05D004262 7.1e-64 248.4 325 51.7
Thecc.01G019000 Theobroma cacao HOM05D003676 ORTHO05D004262 1.2e-63 247.7 366 48.9
Nn5g30150 Nelumbo nucifera HOM05D003676 ORTHO05D004262 3.3e-61 239.6 379 46.7
arahy.Tifrunner.gnm1.ann1.3LB61T Arachis hypogaea HOM05D003676 ORTHO05D004262 9.6e-61 238.0 365 51.2
Manes.01G145700 Manihot esculenta HOM05D003676 ORTHO05D004262 9.6e-61 238.0 360 50.8
arahy.Tifrunner.gnm1.ann1.CCI0LY Arachis hypogaea HOM05D003676 ORTHO05D004262 1.6e-60 237.3 365 51.2
Sabra05G0093400 Salix brachista HOM05D003676 ORTHO05D004262 3.7e-60 236.1 376 48.7
MD02G1132500 Malus domestica HOM05D003676 ORTHO05D004262 8.2e-60 235.0 377 50.1
Solyc02g083890.4 Solanum lycopersicum HOM05D003676 ORTHO05D004262 1.4e-59 234.2 365 50.7
Nitab4.5_0005660g0010 Nicotiana tabacum HOM05D003676 ORTHO05D004262 1.8e-59 233.8 355 54.1
Prupe.7G168100 Prunus persica HOM05D003676 ORTHO05D004262 3.1e-59 233.0 384 49.0
Sopen02g028680 Solanum pennellii HOM05D003676 ORTHO05D004262 3.1e-59 233.0 370 50.0
RcHm_v2.0_Chr2g0099451 Rosa chinensis HOM05D003676 ORTHO05D004262 4.1e-59 232.6 331 51.4
ClCG10G000750 Citrullus lanatus HOM05D003676 ORTHO05D004262 6.9e-59 231.9 375 49.9
Dinv33627 Davidia involucrata HOM05D003676 ORTHO05D004262 9.0e-59 231.5 354 49.7
Nitab4.5_0003382g0020 Nicotiana tabacum HOM05D003676 ORTHO05D004262 9.0e-59 231.5 346 55.8
TAR381G0332 Trochodendron aralioides HOM05D003676 ORTHO05D004262 9.0e-59 231.5 360 48.6
THA.LOC104819178 Tarenaya hassleriana HOM05D003676 ORTHO05D004262 1.2e-58 231.1 335 52.5
MD15G1246000 Malus domestica HOM05D003676 ORTHO05D004262 3.4e-58 229.6 371 52.0
CSS0021991 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 4.5e-58 229.2 379 46.2
CSS0022685 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 7.6e-58 228.4 378 46.8
FvH4_1g11840 Fragaria vesca HOM05D003676 ORTHO05D004262 7.6e-58 228.4 388 47.9
Lj4g0000664 Lotus japonicus HOM05D003676 ORTHO05D004262 7.6e-58 228.4 354 48.9
Peaxi162Scf00083g00320 Petunia axillaris HOM05D003676 ORTHO05D004262 1.3e-57 227.6 365 53.2
Potri.005G114100 Populus trichocarpa HOM05D003676 ORTHO05D004262 1.3e-57 227.6 374 47.3
FAN26G1220 Fragaria x ananassa HOM05D003676 ORTHO05D004262 2.2e-57 226.9 329 53.5
QL06p032755 Quercus lobata HOM05D003676 ORTHO05D004262 8.4e-57 224.9 378 48.9
BcaNung04494 Brassica carinata HOM05D003676 ORTHO05D004262 1.4e-56 224.2 243 64.2
Sp5g10990 Schrenkiella parvula HOM05D003676 ORTHO05D004262 1.4e-56 224.2 332 49.4
Cc07_g10720 Coffea canephora HOM05D003676 ORTHO05D004262 1.9e-56 223.8 384 45.8
FAN19G1818 Fragaria x ananassa HOM05D003676 ORTHO05D004262 1.9e-56 223.8 379 46.4
Ciclev10025949m.g Citrus clementina HOM05D003676 ORTHO05D004262 4.2e-56 222.6 365 48.5
Duzib264G0036 Durio zibethinus HOM05D003676 ORTHO05D004262 4.2e-56 222.6 363 48.2
TAR376G0994 Trochodendron aralioides HOM05D003676 ORTHO05D004262 7.1e-56 221.9 346 48.6
CSS0018215 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 9.3e-56 221.5 364 47.5
Hma1.2p1_0258F.1_g104145 Hydrangea macrophylla HOM05D003676 ORTHO05D004262 9.3e-56 221.5 350 49.1
CiPaw.07G058500 Carya illinoinensis HOM05D003676 ORTHO05D004262 1.2e-55 221.1 379 49.3
MELO3C013767.2 Cucumis melo HOM05D003676 ORTHO05D004262 1.6e-55 220.7 382 46.6
VMungo0251G0225 Vigna mungo HOM05D003676 ORTHO05D004262 3.5e-55 219.5 361 50.1
CsaV3_3G000800 Cucumis sativus L. HOM05D003676 ORTHO05D004262 6.1e-55 218.8 380 48.2
Phvul.003G262100 Phaseolus vulgaris HOM05D003676 ORTHO05D004262 6.1e-55 218.8 349 49.3
Eucgr.I02350 Eucalyptus grandis HOM05D003676 ORTHO05D004262 7.9e-55 218.4 374 48.4
MBI05_g37447_MAGBIO Magnolia biondii HOM05D003676 ORTHO05D004262 7.9e-55 218.4 345 46.1
Lalb_Chr05g0212401 Lupinus albus HOM05D003676 ORTHO05D004262 1.3e-54 217.6 353 45.9
FAN23G0443 Fragaria x ananassa HOM05D003676 ORTHO05D004262 8.7e-54 214.9 330 50.9
Manes.02G104500 Manihot esculenta HOM05D003676 ORTHO05D004262 8.7e-54 214.9 327 51.1
Nn1g05889 Nelumbo nucifera HOM05D003676 ORTHO05D004262 8.7e-54 214.9 355 49.0
TPR.G30058 Trifolium pratense HOM05D003676 ORTHO05D004262 8.7e-54 214.9 371 43.9
Atru.chr3.798 Acer truncatum HOM05D003676 ORTHO05D004262 2.5e-53 213.4 370 46.2
MSTRG.2714 Avicennia marina HOM05D003676 ORTHO05D004262 3.3e-53 213.0 348 50.3
Psat4g099080 Pisum sativum HOM05D003676 ORTHO05D004262 3.3e-53 213.0 365 45.2
Gohir.A11G175400 Gossypium hirsutum HOM05D003676 ORTHO05D004262 7.4e-53 211.8 353 44.2
Sed0017342 Sechium edule HOM05D003676 ORTHO05D004262 9.7e-53 211.5 371 49.1
Medtr8g075950 Medicago truncatula HOM05D003676 ORTHO05D004262 1.6e-52 210.7 358 46.4
CAN.G1671.14 Capsicum annuum HOM05D003676 ORTHO05D004262 3.7e-52 209.5 380 47.1
vmacro18414 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 3.7e-52 209.5 368 47.6
Lj2A468T73 Lonicera japonica HOM05D003676 ORTHO05D004262 6.3e-52 208.8 379 47.2
PGSC0003DMG400003640 Solanum tuberosum HOM05D003676 ORTHO05D004262 6.3e-52 208.8 357 49.0
TAR628G0168 Trochodendron aralioides HOM05D003676 ORTHO05D004262 6.3e-52 208.8 360 47.2
Cfa006972 Carpinus fangiana HOM05D003676 ORTHO05D004262 1.4e-51 207.6 378 48.4
DCAR_016607 Daucus carota HOM05D003676 ORTHO05D004262 1.8e-51 207.2 371 48.0
Cpa.g.sc6.251 Carica papaya HOM05D003676 ORTHO05D004262 3.1e-51 206.5 376 47.3
COL.COLO4_21910 Corchorus olitorius HOM05D003676 ORTHO05D004262 5.3e-51 205.7 345 45.5
Actinidia17444 Actinidia chinensis HOM05D003676 ORTHO05D004262 6.9e-51 205.3 355 44.5
BcaNung00393 Brassica carinata HOM05D003676 ORTHO05D004262 4.5e-50 202.6 295 51.5
Ca_22374_v3 Cicer arietinum L. HOM05D003676 ORTHO05D004262 4.5e-50 202.6 330 45.2
BcaC09g50089 Brassica carinata HOM05D003676 ORTHO05D004262 5.9e-50 202.2 298 50.0
C01p29220 Brassica napus HOM05D003676 ORTHO05D004262 5.9e-50 202.2 298 50.0
CANSAT01G0038 Cannabis sativa HOM05D003676 ORTHO05D004262 7.7e-50 201.8 392 43.9
A01p23560 Brassica napus HOM05D003676 ORTHO05D004262 2.2e-49 200.3 298 48.3
BraA01t02262Z Brassica rapa HOM05D003676 ORTHO05D004262 2.2e-49 200.3 298 48.3
Hund16490 Selenicereus undatus HOM05D003676 ORTHO05D004262 2.9e-49 199.9 391 44.0
Gorai.007G194900 Gossypium raimondii HOM05D003676 ORTHO05D004262 5.0e-49 199.1 342 44.2
TWI09G1351 Tripterygium wilfordii HOM05D003676 ORTHO05D004262 5.0e-49 199.1 305 50.2
Gohir.D11G182900 Gossypium hirsutum HOM05D003676 ORTHO05D004262 6.5e-49 198.7 342 43.9
Oeu063192.2 Olea europaea HOM05D003676 ORTHO05D004262 1.9e-48 197.2 332 44.3
Hma1.2p1_0956F.1_g241320 Hydrangea macrophylla HOM05D003676 ORTHO05D004262 4.2e-48 196.1 367 47.4
PGR119G1864 Punica granatum HOM05D003676 ORTHO05D004262 5.5e-48 195.7 354 45.5
SalBow3G1193 Salvia bowleyana HOM05D003676 ORTHO05D004262 7.2e-48 195.3 330 46.7
Gohir.A12G059600 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.2e-47 194.5 355 47.0
Gorai.008G063100 Gossypium raimondii HOM05D003676 ORTHO05D004262 1.2e-47 194.5 345 47.5
Hund14045 Selenicereus undatus HOM05D003676 ORTHO05D004262 1.2e-47 194.5 365 43.6
Glyma.16G128800 Glycine max HOM05D003676 ORTHO05D004262 2.1e-47 193.7 368 46.7
Gohir.D12G060000 Gossypium hirsutum HOM05D003676 ORTHO05D004262 2.7e-47 193.4 348 47.1
Gohir.D11G183000 Gossypium hirsutum HOM05D003676 ORTHO05D004262 4.6e-47 192.6 309 46.6
Glyma.02G048700 Glycine max HOM05D003676 ORTHO05D004262 6.1e-47 192.2 366 46.7
Rhsim10G0212200 Rhododendron simsii HOM05D003676 ORTHO05D004262 6.1e-47 192.2 347 47.3
Carub.0005s1760 Capsella rubella HOM05D003676 ORTHO05D004262 7.9e-47 191.8 318 44.0
Oeu012589.1 Olea europaea HOM05D003676 ORTHO05D004262 3.9e-46 189.5 331 44.1
Oeu048461.1 Olea europaea HOM05D003676 ORTHO05D004262 5.1e-46 189.1 342 48.2
Gorai.007G195000 Gossypium raimondii HOM05D003676 ORTHO05D004262 8.8e-46 188.3 309 45.6
GSVIVG01018782001 Vitis vinifera HOM05D003676 ORTHO05D004262 1.5e-45 187.6 243 55.6
PSO541G5658 Papaver somniferum HOM05D003676 ORTHO05D004262 3.3e-45 186.4 369 40.9
Rhsim08G0033700 Rhododendron simsii HOM05D003676 ORTHO05D004262 4.3e-45 186.0 369 43.9
AT3G51230 Arabidopsis thaliana HOM05D003676 ORTHO05D004262 9.7e-45 184.9 208 58.7
FAN28G1902 Fragaria x ananassa HOM05D003676 ORTHO05D004262 1.3e-44 184.5 322 48.8
MBI05_g30743_MAGBIO Magnolia biondii HOM05D003676 ORTHO05D004262 1.3e-44 184.5 333 40.5
Sc07g0000980 Simmondsia chinensis HOM05D003676 ORTHO05D004262 1.3e-44 184.5 320 48.1
AUR62029464 Chenopodium quinoa HOM05D003676 ORTHO05D004262 2.8e-44 183.3 346 42.2
PSO675G7127 Papaver somniferum HOM05D003676 ORTHO05D004262 2.8e-44 183.3 360 43.3
ECA232G1625 Erigeron canadensis HOM05D003676 ORTHO05D004262 1.4e-43 181.0 342 41.2
HanXRQChr09g0256601 Helianthus annuus HOM05D003676 ORTHO05D004262 1.8e-43 180.6 299 45.2
Actinidia30997 Actinidia chinensis HOM05D003676 ORTHO05D004262 2.4e-43 180.3 353 44.8
Gohir.A02G170700 Gossypium hirsutum HOM05D003676 ORTHO05D004262 3.1e-43 179.9 434 38.0
unitig_736.g22721 Utricularia gibba HOM05D003676 ORTHO05D004262 9.1e-43 178.3 337 43.0
Aqoxy6G02292 Aquilegia oxysepala HOM05D003676 ORTHO05D004262 2.0e-42 177.2 341 41.6
Glyma.01G166300 Glycine max HOM05D003676 ORTHO05D004262 4.5e-42 176.0 364 42.3
Gohir.D03G009400 Gossypium hirsutum HOM05D003676 ORTHO05D004262 4.5e-42 176.0 434 37.3
Lsat_1_v5_gn_4_146360 Lactuca sativa HOM05D003676 ORTHO05D004262 1.1e-40 171.4 300 43.7
Sc16g0002190 Simmondsia chinensis HOM05D003676 ORTHO05D004262 1.1e-40 171.4 307 40.7
Actinidia22976 Actinidia chinensis HOM05D003676 ORTHO05D004262 1.4e-40 171.0 267 48.7
TWI53G0168 Tripterygium wilfordii HOM05D003676 ORTHO05D004262 2.5e-40 170.2 378 41.8
CARHR160810 Cardamine hirsuta HOM05D003676 ORTHO05D004262 3.2e-40 169.9 217 53.9
Gorai.003G009600 Gossypium raimondii HOM05D003676 ORTHO05D004262 1.0e-38 164.9 440 36.1
Glyma.11G077200 Glycine max HOM05D003676 ORTHO05D004262 1.8e-38 164.1 376 42.3
Potri.007G057800 Populus trichocarpa HOM05D003676 ORTHO05D004262 1.8e-38 164.1 365 41.6
SGA_v2.0_scaffold78G25382 Striga asiatica HOM05D003676 ORTHO05D004262 7.4e-37 158.7 348 43.7
HanXRQChr15g0487251 Helianthus annuus HOM05D003676 ORTHO05D004262 9.7e-37 158.3 306 43.8
AUR62003369 Chenopodium quinoa HOM05D003676 ORTHO05D004262 3.7e-36 156.4 347 40.9
Ca_25824_v3 Cicer arietinum L. HOM05D003676 ORTHO05D004262 3.7e-36 156.4 359 42.9
Lj4A218T52 Lonicera japonica HOM05D003676 ORTHO05D004262 4.8e-36 156.0 361 39.9
Lsat_1_v5_gn_3_74521 Lactuca sativa HOM05D003676 ORTHO05D004262 9.1e-35 151.8 305 43.3
Haze_03763 Corylus avellana HOM05D003676 ORTHO05D004262 2.0e-34 150.6 178 59.0
HPP92_020902 Vanilla planifolia HOM05D003676 ORTHO05D004262 5.9e-34 149.1 363 43.0
Migut.H01153 Erythranthe guttata HOM05D003676 ORTHO05D004262 7.7e-34 148.7 330 42.4
Ah.03g148760 Amaranthus hybridus HOM05D003676 ORTHO05D004262 1.3e-33 147.9 323 41.8
CDE05G2608 Ceratophyllum demersum HOM05D003676 ORTHO05D004262 2.9e-33 146.7 301 39.5
ECA246G1385 Erigeron canadensis HOM05D003676 ORTHO05D004262 3.2e-32 143.3 253 45.1
unitig_899.g14713 Utricularia gibba HOM05D003676 ORTHO05D004262 5.5e-32 142.5 300 39.0
Phvul.002G108800 Phaseolus vulgaris HOM05D003676 ORTHO05D004262 1.0e-30 138.3 317 38.2
Nn1g05888 Nelumbo nucifera HOM05D003676 ORTHO05D004262 1.4e-30 137.9 341 37.5
CDE05G0776 Ceratophyllum demersum HOM05D003676 ORTHO05D004262 1.8e-30 137.5 248 43.5
Psat2g154560 Pisum sativum HOM05D003676 ORTHO05D004262 2.6e-29 133.7 354 40.1
Medtr5g022010 Medicago truncatula HOM05D003676 ORTHO05D004262 9.7e-29 131.7 353 38.8
TPR.G18183 Trifolium pratense HOM05D003676 ORTHO05D004262 8.2e-28 128.6 357 36.7
Zm00001eb024930 Zea mays HOM05D003676 ORTHO05D004262 1.1e-27 128.3 339 35.7
PGSC0003DMG400023891 Solanum tuberosum HOM05D003676 ORTHO05D004262 1.4e-27 127.9 246 41.9
ATR0149G006 Amborella trichopoda HOM05D003676 ORTHO05D004262 2.0e-26 124.0 349 34.7
Os10g0577400 Oryza sativa ssp. japonica HOM05D003676 ORTHO05D004262 1.0e-25 121.7 373 34.6
Zm00001eb224920 Zea mays HOM05D003676 ORTHO05D004262 1.7e-25 120.9 391 31.7
Nitab4.5_0002337g0030 Nicotiana tabacum HOM05D003676 ORTHO05D004262 8.5e-25 118.6 282 38.7
Solyc02g062170.3 Solanum lycopersicum HOM05D003676 ORTHO05D004262 2.5e-24 117.1 240 40.8
SEGI_09532 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 5.5e-24 115.9 386 31.6
DCAR_025998 Daucus carota HOM05D003676 ORTHO05D004262 9.4e-24 115.2 237 41.4
SEGI_21114 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 1.2e-23 114.8 369 31.4
SHI32179 Sapria himalayana HOM05D003676 ORTHO05D004262 1.6e-23 114.4 320 34.4
Sopen02g013140 Solanum pennellii HOM05D003676 ORTHO05D004262 2.1e-23 114.0 240 40.4
Lalb_Chr09g0321731 Lupinus albus HOM05D003676 ORTHO05D004262 8.0e-23 112.1 339 35.4
Nitab4.5_0000188g0110 Nicotiana tabacum HOM05D003676 ORTHO05D004262 4.0e-22 109.8 211 45.5
Gorai.010G060700 Gossypium raimondii HOM05D003676 ORTHO05D004262 4.4e-21 106.3 119 59.7
RcHm_v2.0_Chr6g0272671 Rosa chinensis HOM05D003676 ORTHO05D004262 5.4e-19 99.4 131 54.2
Atru.chr1.3640 Acer truncatum HOM05D003676 ORTHO05D004262 7.7e-18 95.5 126 54.8
HanXRQChr16g0531461 Helianthus annuus HOM05D003676 ORTHO05D004262 7.7e-18 95.5 214 36.9
vmacro23249 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 8.0e-15 85.5 221 36.7
vmacro23473 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 8.0e-15 85.5 221 36.7
SEGI_24904 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 1.2e-13 81.6 273 31.5
Gohir.D09G239350 Gossypium hirsutum HOM05D003676 ORTHO05D004262 2.7e-10 70.5 58 67.2
Gorai.006G262100 Gossypium raimondii HOM05D003676 ORTHO05D004262 5.9e-10 69.3 58 65.5
TAR629G3197 Trochodendron aralioides HOM05D003676 ORTHO05D004262 1.5e-08 64.7 93 44.1
vmacro22131 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 6.1e-07 59.3 218 30.7
Atru.chr1.3647 Acer truncatum HOM05D003676 ORTHO05D004262 2.3e-06 57.4 152 39.5
Mapoly0004s0127 Marchantia polymorpha HOM05D003676 ORTHO05D030105 8.9e-06 55.5 307 29.3


User provided reference genes

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