Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s2826 Capsella rubella HOM05D014245 ORTHO05D010083 2.5e-50 201.8 105 100.0
AL8G45290 Arabidopsis lyrata HOM05D014245 ORTHO05D010083 1.9e-29 132.5 106 74.5
Thhalv10005172m.g Eutrema salsugineum HOM05D014245 ORTHO05D010083 3.6e-28 128.3 102 77.5
CARHR281490 Cardamine hirsuta HOM05D014245 ORTHO05D010083 8.0e-28 127.1 103 75.7
Sp2g30460 Schrenkiella parvula HOM05D014245 ORTHO05D010083 1.7e-25 119.4 101 73.3
BcaB02g10776 Brassica carinata HOM05D014245 ORTHO05D010083 7.0e-24 114.0 97 69.1
A06p26690 Brassica napus HOM05D014245 ORTHO05D010083 1.9e-21 105.9 109 62.4
BcaC01g02219 Brassica carinata HOM05D014245 ORTHO05D010083 1.3e-14 83.2 87 59.8
BolSC21t60232H Brassica oleracea HOM05D014245 ORTHO05D010083 1.3e-14 83.2 87 59.8
C03p67730 Brassica napus HOM05D014245 ORTHO05D010083 6.5e-14 80.9 82 62.2
Prupe.7G167900 Prunus persica HOM05D008224 ORTHO05D010083 1.5e-13 79.7 98 51.0
Solyc02g083930.1 Solanum lycopersicum HOM05D008224 ORTHO05D010083 4.2e-13 78.2 94 50.0
Sopen02g028710 Solanum pennellii HOM05D008224 ORTHO05D010083 4.2e-13 78.2 94 50.0
Gohir.D10G089800 Gossypium hirsutum HOM05D008224 ORTHO05D010083 9.5e-13 77.0 94 48.9
Gorai.011G098500 Gossypium raimondii HOM05D008224 ORTHO05D010083 9.5e-13 77.0 94 48.9
Manes.02G104200 Manihot esculenta HOM05D008224 ORTHO05D010083 1.6e-12 76.3 92 48.9
COL.COLO4_21914 Corchorus olitorius HOM05D008224 ORTHO05D010083 2.1e-12 75.9 94 50.0
Glyma.11G076300 Glycine max HOM05D008224 ORTHO05D010083 4.7e-12 74.7 91 51.6
Gohir.A10G098400 Gossypium hirsutum HOM05D008224 ORTHO05D010083 8.0e-12 73.9 94 46.8
PGSC0003DMG400003638 Solanum tuberosum HOM05D008224 ORTHO05D010083 8.0e-12 73.9 92 47.8
CiPaw.08G131800 Carya illinoinensis HOM05D008224 ORTHO05D010083 1.0e-11 73.6 95 44.2
Lalb_Chr09g0321801 Lupinus albus HOM05D008224 ORTHO05D010083 1.8e-11 72.8 97 48.5
FvH4_1g11880 Fragaria vesca HOM05D008224 ORTHO05D010083 2.3e-11 72.4 84 52.4
FAN19G0355 Fragaria x ananassa HOM05D008224 ORTHO05D010083 2.3e-11 72.4 84 52.4
Sabra05G0093700 Salix brachista HOM05D008224 ORTHO05D010083 2.3e-11 72.4 97 44.3
Psat2g155040 Pisum sativum HOM05D008224 ORTHO05D010083 3.0e-11 72.0 93 48.4
Glyma.01G166900 Glycine max HOM05D008224 ORTHO05D010083 4.0e-11 71.6 91 51.6
Phvul.002G109500 Phaseolus vulgaris HOM05D008224 ORTHO05D010083 6.8e-11 70.9 85 49.4
Potri.005G114500 Populus trichocarpa HOM05D008224 ORTHO05D010083 8.8e-11 70.5 96 44.8
QL06p032684 Quercus lobata HOM05D008224 ORTHO05D010083 8.8e-11 70.5 95 41.1
Atru.chr4.381 Acer truncatum HOM05D008224 ORTHO05D010083 1.5e-10 69.7 92 43.5
Aqoxy5G01777 Aquilegia oxysepala HOM05D008224 ORTHO05D010083 1.5e-10 69.7 99 39.4
Nitab4.5_0003271g0030 Nicotiana tabacum HOM05D008224 ORTHO05D010083 2.0e-10 69.3 93 43.0
QL12p007153 Quercus lobata HOM05D008224 ORTHO05D010083 2.0e-10 69.3 95 42.1
Thecc.01G019300 Theobroma cacao HOM05D008224 ORTHO05D010083 2.6e-10 68.9 92 45.7
Ca_25829_v3 Cicer arietinum L. HOM05D008224 ORTHO05D010083 4.4e-10 68.2 91 48.4
Nitab4.5_0006286g0060 Nicotiana tabacum HOM05D008224 ORTHO05D010083 4.4e-10 68.2 93 43.0
Gorai.003G009900 Gossypium raimondii HOM05D008224 ORTHO05D010083 5.7e-10 67.8 104 41.3
Lj4P218T44 Lonicera japonica HOM05D008224 ORTHO05D010083 5.7e-10 67.8 102 44.1
Gohir.A11G175668 Gossypium hirsutum HOM05D008224 ORTHO05D010083 7.5e-10 67.4 93 46.2
Medtr5g021840 Medicago truncatula HOM05D008224 ORTHO05D010083 1.3e-09 66.6 93 50.5
Peaxi162Scf00083g00052 Petunia axillaris HOM05D008224 ORTHO05D010083 1.3e-09 66.6 97 39.2
Gohir.D11G183450 Gossypium hirsutum HOM05D008224 ORTHO05D010083 1.7e-09 66.2 93 46.2
Gorai.007G195300 Gossypium raimondii HOM05D008224 ORTHO05D010083 2.2e-09 65.9 96 45.8
Haze_03767 Corylus avellana HOM05D008224 ORTHO05D010083 2.8e-09 65.5 85 48.2
TAR381G1028 Trochodendron aralioides HOM05D008224 ORTHO05D010083 8.3e-09 63.9 96 41.7
Hma1.2p1_0258F.1_g104170 Hydrangea macrophylla HOM05D008224 ORTHO05D010083 1.1e-08 63.5 77 49.4
TPR.G18188 Trifolium pratense HOM05D008224 ORTHO05D010083 1.1e-08 63.5 81 48.1
Ciclev10027456m.g Citrus clementina HOM05D008224 ORTHO05D010083 1.4e-08 63.2 98 43.9
Hma1.2p1_0956F.1_g241380 Hydrangea macrophylla HOM05D008224 ORTHO05D010083 2.4e-08 62.4 82 42.7
Hma1.2p1_2239F.1_g317816 Hydrangea macrophylla HOM05D008224 ORTHO05D010083 2.4e-08 62.4 82 42.7
Cc07_g10680 Coffea canephora HOM05D008224 ORTHO05D010083 2.0e-07 59.3 90 42.2
Oeu064592.1 Olea europaea HOM05D008224 ORTHO05D010083 2.0e-07 59.3 98 44.9
CSS0002084 Camellia sinensis var. sinensis HOM05D008224 ORTHO05D010083 2.7e-07 58.9 106 36.8
TAR625G0799 Trochodendron aralioides HOM05D008224 ORTHO05D010083 2.7e-07 58.9 88 40.9
FAN26G2375 Fragaria x ananassa HOM05D011822 ORTHO05D010083 3.5e-07 58.5 63 55.6
Nn5g30159 Nelumbo nucifera HOM05D008224 ORTHO05D010083 3.5e-07 58.5 83 42.2
Actinidia28703 Actinidia chinensis HOM05D008224 ORTHO05D010083 4.5e-07 58.2 107 40.2
Nn1g05883 Nelumbo nucifera HOM05D008224 ORTHO05D010083 5.9e-07 57.8 74 44.6
ATR0627G002 Amborella trichopoda HOM05D008224 ORTHO05D010083 1.0e-06 57.0 81 39.5
DCAR_016610 Daucus carota HOM05D008224 ORTHO05D010083 1.3e-06 56.6 77 40.3
Sed0025479 Sechium edule HOM05D008224 ORTHO05D010083 1.3e-06 56.6 78 47.4
Actinidia22982 Actinidia chinensis HOM05D002668 ORTHO05D003295 3.8e-06 55.1 68 44.1
ATR0481G006 Amborella trichopoda HOM05D008224 ORTHO05D010083 5.0e-06 54.7 81 38.3


User provided reference genes

Program Settings