Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s2820 Capsella rubella HOM05D005734 ORTHO05D006990 7.7e-104 380.6 203 100.0
AL8G45230 Arabidopsis lyrata HOM05D005734 ORTHO05D006990 5.0e-95 351.3 203 92.6
Sp2g30330 Schrenkiella parvula HOM05D005734 ORTHO05D006990 6.1e-93 344.4 202 92.1
Thhalv10004735m.g Eutrema salsugineum HOM05D005734 ORTHO05D006990 1.2e-88 330.1 189 92.1
AT5G66290 Arabidopsis thaliana HOM05D005734 ORTHO05D006990 2.7e-88 328.9 188 93.6
A07p17570 Brassica napus HOM05D005734 ORTHO05D006990 2.8e-85 318.9 206 88.3
BcaB02g10036 Brassica carinata HOM05D005734 ORTHO05D006990 6.1e-85 317.8 205 87.8
Aa31LG1G14770 Aethionema arabicum HOM05D005734 ORTHO05D006990 2.3e-84 315.8 203 85.2
BcaNung04509 Brassica carinata HOM05D005734 ORTHO05D006990 1.2e-83 313.5 207 84.1
BcaC06g34694 Brassica carinata HOM05D005734 ORTHO05D006990 3.4e-83 312.0 207 86.0
C07p25530 Brassica napus HOM05D005734 ORTHO05D006990 3.4e-83 312.0 207 86.0
BolC7t43073H Brassica oleracea HOM05D005734 ORTHO05D006990 3.4e-83 312.0 207 86.0
BcaC04g23124 Brassica carinata HOM05D005734 ORTHO05D006990 2.0e-80 302.8 203 84.2
BcaNung05273 Brassica carinata HOM05D005734 ORTHO05D006990 2.0e-80 302.8 203 84.2
C09p11890 Brassica napus HOM05D005734 ORTHO05D006990 2.5e-78 295.8 190 85.8
BolC9t54077H Brassica oleracea HOM05D005734 ORTHO05D006990 7.3e-78 294.3 185 87.6
THA.LOC104819182 Tarenaya hassleriana HOM05D005734 ORTHO05D006990 6.2e-77 291.2 189 82.5
BcaC04g23120 Brassica carinata HOM05D005734 ORTHO05D006990 1.8e-76 289.7 193 85.0
A09p10030 Brassica napus HOM05D005734 ORTHO05D006990 1.7e-74 283.1 202 76.2
CARHR281420 Cardamine hirsuta HOM05D005734 ORTHO05D006990 1.3e-71 273.5 159 91.8
Solyc02g084220.3 Solanum lycopersicum HOM05D005734 ORTHO05D006990 1.8e-68 263.1 203 70.0
Sopen02g028960 Solanum pennellii HOM05D005734 ORTHO05D006990 1.2e-67 260.4 203 69.5
Rhsim08G0034500 Rhododendron simsii HOM05D005734 ORTHO05D006990 8.4e-66 254.2 187 69.0
Cc07_g10570 Coffea canephora HOM05D005734 ORTHO05D006990 2.4e-65 252.7 186 72.0
Dinv33615 Davidia involucrata HOM05D005734 ORTHO05D006990 2.4e-65 252.7 187 70.6
Gorai.003G010600 Gossypium raimondii HOM05D005734 ORTHO05D006990 2.4e-65 252.7 201 66.7
Gohir.D03G010200 Gossypium hirsutum HOM05D005734 ORTHO05D006990 5.4e-65 251.5 190 67.9
Thecc.01G021200 Theobroma cacao HOM05D005734 ORTHO05D006990 5.4e-65 251.5 199 67.3
COL.COLO4_21933 Corchorus olitorius HOM05D005734 ORTHO05D006990 9.2e-65 250.8 199 66.8
Lj2C466G2 Lonicera japonica HOM05D005734 ORTHO05D006990 9.2e-65 250.8 200 69.0
Manes.02G102700 Manihot esculenta HOM05D005734 ORTHO05D006990 9.2e-65 250.8 202 67.8
DCAR_017347 Daucus carota HOM05D005734 ORTHO05D006990 1.2e-64 250.4 201 66.7
QL06p033653 Quercus lobata HOM05D005734 ORTHO05D006990 1.2e-64 250.4 201 67.7
CsaV3_4G005730 Cucumis sativus L. HOM05D005734 ORTHO05D006990 3.5e-64 248.8 190 67.9
PGSC0003DMG400003554 Solanum tuberosum HOM05D005734 ORTHO05D006990 3.5e-64 248.8 229 62.4
Peaxi162Scf00083g00086 Petunia axillaris HOM05D005734 ORTHO05D006990 6.0e-64 248.1 203 67.5
Gohir.A02G169800 Gossypium hirsutum HOM05D005734 ORTHO05D006990 1.0e-63 247.3 185 68.1
MSTRG.2698 Avicennia marina HOM05D005734 ORTHO05D006990 1.3e-63 246.9 198 68.7
Nitab4.5_0005721g0110 Nicotiana tabacum HOM05D005734 ORTHO05D006990 2.3e-63 246.1 212 66.0
ClCG07G008420 Citrullus lanatus HOM05D005734 ORTHO05D006990 3.0e-63 245.7 190 67.4
Ciclev10026469m.g Citrus clementina HOM05D005734 ORTHO05D006990 3.9e-63 245.4 198 65.7
TWI73G0895 Tripterygium wilfordii HOM05D005734 ORTHO05D006990 6.6e-63 244.6 201 65.7
SalBow3G4629 Salvia bowleyana HOM05D005734 ORTHO05D006990 1.1e-62 243.8 191 67.0
Nitab4.5_0004254g0030 Nicotiana tabacum HOM05D005734 ORTHO05D006990 1.5e-62 243.4 214 65.9
Duzib147G0754 Durio zibethinus HOM05D005734 ORTHO05D006990 2.5e-62 242.7 200 66.5
Sabra07G0011400 Salix brachista HOM05D005734 ORTHO05D006990 2.5e-62 242.7 189 68.8
TAR376G0390 Trochodendron aralioides HOM05D005734 ORTHO05D006990 2.5e-62 242.7 187 66.3
CiPaw.08G133400 Carya illinoinensis HOM05D005734 ORTHO05D006990 4.3e-62 241.9 196 67.9
Lalb_Chr16g0391171 Lupinus albus HOM05D005734 ORTHO05D006990 4.3e-62 241.9 187 67.9
Phvul.002G110400 Phaseolus vulgaris HOM05D005734 ORTHO05D006990 4.3e-62 241.9 187 69.5
MD15G1247200 Malus domestica HOM05D005734 ORTHO05D006990 5.6e-62 241.5 185 67.0
VMungo1215G0268 Vigna mungo HOM05D005734 ORTHO05D006990 2.8e-61 239.2 187 68.4
Actinidia31004 Actinidia chinensis HOM05D005734 ORTHO05D006990 4.7e-61 238.4 188 67.0
Ca_24908_v3 Cicer arietinum L. HOM05D005734 ORTHO05D006990 4.7e-61 238.4 199 62.8
Eucgr.K02152 Eucalyptus grandis HOM05D005734 ORTHO05D006990 4.7e-61 238.4 194 66.0
Sabra05G0095300 Salix brachista HOM05D005734 ORTHO05D006990 8.1e-61 237.7 189 68.3
Glyma.11G075600 Glycine max HOM05D005734 ORTHO05D006990 1.8e-60 236.5 195 64.6
Sed0005630 Sechium edule HOM05D005734 ORTHO05D006990 3.1e-60 235.7 190 64.2
Potri.005G116300 Populus trichocarpa HOM05D005734 ORTHO05D006990 5.2e-60 235.0 189 68.3
CSS0031169 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 6.8e-60 234.6 195 63.6
TWI09G0878 Tripterygium wilfordii HOM05D005734 ORTHO05D006990 8.9e-60 234.2 194 66.0
Migut.H01144 Erythranthe guttata HOM05D005734 ORTHO05D006990 1.5e-59 233.4 204 62.3
arahy.Tifrunner.gnm1.ann1.GC558H Arachis hypogaea HOM05D005734 ORTHO05D006990 2.0e-59 233.0 212 62.7
Lj2g0025294 Lotus japonicus HOM05D005734 ORTHO05D006990 2.0e-59 233.0 203 64.0
MD02G1134200 Malus domestica HOM05D005734 ORTHO05D006990 2.6e-59 232.6 185 65.4
RcHm_v2.0_Chr2g0099641 Rosa chinensis HOM05D005734 ORTHO05D006990 3.4e-59 232.3 185 63.8
Cpa.g.sc6.229 Carica papaya HOM05D005734 ORTHO05D006990 5.8e-59 231.5 180 68.9
FvH4_1g12000 Fragaria vesca HOM05D005734 ORTHO05D006990 7.6e-59 231.1 189 63.5
Medtr5g021750 Medicago truncatula HOM05D005734 ORTHO05D006990 1.3e-58 230.3 195 60.5
Nn6g32291 Nelumbo nucifera HOM05D005734 ORTHO05D006990 1.3e-58 230.3 197 62.4
TPR.G2344 Trifolium pratense HOM05D005734 ORTHO05D006990 1.3e-58 230.3 208 59.6
FAN19G0086 Fragaria x ananassa HOM05D005734 ORTHO05D006990 1.7e-58 229.9 189 63.5
TAR628G0339 Trochodendron aralioides HOM05D005734 ORTHO05D006990 1.7e-58 229.9 187 63.6
EL10Ac3g07303 Beta vulgaris HOM05D005734 ORTHO05D006990 2.2e-58 229.6 195 62.6
Glyma.01G167600 Glycine max HOM05D005734 ORTHO05D006990 8.4e-58 227.6 195 62.6
ATR0147G004 Amborella trichopoda HOM05D005734 ORTHO05D006990 1.1e-57 227.3 182 64.8
PSO210G7806 Papaver somniferum HOM05D005734 ORTHO05D006990 3.2e-57 225.7 191 63.9
GSVIVG01018804001 Vitis vinifera HOM05D005734 ORTHO05D006990 7.1e-57 224.6 203 61.1
Psat2g155360 Pisum sativum HOM05D005734 ORTHO05D006990 9.3e-57 224.2 201 60.7
Ah.03g141620 Amaranthus hybridus HOM05D005734 ORTHO05D006990 1.0e-55 220.7 188 64.9
HanXRQChr16g0531031 Helianthus annuus HOM05D005734 ORTHO05D006990 1.9e-54 216.5 198 60.6
Lsat_1_v5_gn_3_73980 Lactuca sativa HOM05D005734 ORTHO05D006990 1.9e-54 216.5 203 61.6
Gohir.A12G060300 Gossypium hirsutum HOM05D005734 ORTHO05D006990 2.8e-53 212.6 193 61.1
Hund14038 Selenicereus undatus HOM05D005734 ORTHO05D006990 3.6e-53 212.2 229 53.3
Aqoxy4G02678 Aquilegia oxysepala HOM05D005734 ORTHO05D006990 1.8e-52 209.9 190 60.0
Aqoxy4G02673 Aquilegia oxysepala HOM05D005734 ORTHO05D006990 5.3e-52 208.4 190 59.5
MBI05_g26512_MAGBIO Magnolia biondii HOM05D005734 ORTHO05D006990 6.9e-52 208.0 193 60.6
HPP92_018404 Vanilla planifolia HOM05D005734 ORTHO05D006990 6.9e-52 208.0 185 60.0
ECA246G4348 Erigeron canadensis HOM05D000013 ORTHO05D000011 2.6e-51 206.1 193 61.7
unitig_699.g19712 Utricularia gibba HOM05D005734 ORTHO05D006990 9.9e-51 204.1 184 59.8
HanXRQChr15g0482851 Helianthus annuus HOM05D005734 ORTHO05D006990 1.1e-49 200.7 191 59.2
Prupe.7G166600 Prunus persica HOM05D005734 ORTHO05D006990 1.1e-49 200.7 187 58.3
Nn5g29268 Nelumbo nucifera HOM05D005734 ORTHO05D006990 4.2e-49 198.7 182 59.3
Os03g0727100 Oryza sativa ssp. japonica HOM05D005734 ORTHO05D006990 4.2e-49 198.7 211 55.0
CSS0012385 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 1.2e-48 197.2 148 70.9
CSS0021905 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 2.7e-48 196.1 148 70.9
RcHm_v2.0_Chr1g0353231 Rosa chinensis HOM05D005734 ORTHO05D006990 7.9e-48 194.5 167 59.9
FAN26G0019 Fragaria x ananassa HOM05D005734 ORTHO05D006990 1.0e-47 194.1 185 56.2
RcHm_v2.0_Chr0c39g0503221 Rosa chinensis HOM05D005734 ORTHO05D006990 2.3e-47 193.0 144 66.0
RcHm_v2.0_Chr5g0080231 Rosa chinensis HOM05D005734 ORTHO05D006990 2.3e-47 193.0 149 65.1
Sc16g0002040 Simmondsia chinensis HOM05D005734 ORTHO05D006990 2.5e-46 189.5 139 70.5
Lsat_1_v5_gn_4_152781 Lactuca sativa HOM05D005734 ORTHO05D006990 7.3e-46 188.0 181 54.7
Zm00001eb055930 Zea mays HOM05D005734 ORTHO05D006990 3.6e-45 185.7 214 51.9
Cfa006957 Carpinus fangiana HOM05D005734 ORTHO05D006990 6.2e-45 184.9 117 76.9
vmacro18422 Vaccinium macrocarpon HOM05D005734 ORTHO05D006990 6.2e-45 184.9 236 49.2
QL06p033647 Quercus lobata HOM05D005734 ORTHO05D006990 4.0e-44 182.2 130 70.8
arahy.Tifrunner.gnm1.ann1.DFQ3ES Arachis hypogaea HOM05D005734 ORTHO05D006990 1.5e-43 180.3 157 63.7
Atru.chr3.782 Acer truncatum HOM05D005734 ORTHO05D006990 9.9e-43 177.6 174 54.6
SGA_v2.0_scaffold137G35098 Striga asiatica HOM05D005734 ORTHO05D006990 1.1e-41 174.1 110 77.3
MELO3C016376.2 Cucumis melo HOM05D005734 ORTHO05D006990 3.2e-41 172.6 137 66.4
ATR0876G001 Amborella trichopoda HOM05D005734 ORTHO05D006990 1.2e-40 170.6 111 71.2
AUR62018084 Chenopodium quinoa HOM05D005734 ORTHO05D006990 7.9e-40 167.9 118 69.5
FAN23G1819 Fragaria x ananassa HOM05D005734 ORTHO05D006990 1.6e-37 160.2 190 52.6
Potri.007G014000 Populus trichocarpa HOM05D005734 ORTHO05D006990 2.1e-37 159.8 158 59.5
BraA09t36646Z Brassica rapa HOM05D005734 ORTHO05D006990 8.4e-34 147.9 111 73.9
Gorai.008G063500 Gossypium raimondii HOM05D005734 ORTHO05D006990 1.4e-28 130.6 115 63.5
Mapoly0166s0009 Marchantia polymorpha HOM05D005734 ORTHO05D006990 1.4e-28 130.6 178 41.6
PSO170G3799 Papaver somniferum HOM05D005734 ORTHO05D006990 2.4e-28 129.8 124 58.1
Sc16g0006390 Simmondsia chinensis HOM05D005734 ORTHO05D006990 1.2e-27 127.5 88 72.7
Sc18g0002570 Simmondsia chinensis HOM05D005734 ORTHO05D006990 1.2e-27 127.5 83 75.9
CDE11G0627 Ceratophyllum demersum HOM05D005734 ORTHO05D006990 2.6e-27 126.3 102 58.8
Pp3c14_25740 Physcomitrium patens HOM05D005734 ORTHO05D006990 4.5e-27 125.6 179 42.5
Sc09g0006730 Simmondsia chinensis HOM05D005734 ORTHO05D006990 8.4e-26 121.3 88 69.3
Pp3c1_42750 Physcomitrium patens HOM05D005734 ORTHO05D006990 1.6e-24 117.1 189 40.2
CDE05G1720 Ceratophyllum demersum HOM05D005734 ORTHO05D006990 6.7e-23 111.7 149 48.3
Haze_03794 Corylus avellana HOM05D005734 ORTHO05D006990 4.3e-22 109.0 69 76.8
Lsat_1_v5_gn_4_38760 Lactuca sativa HOM05D005734 ORTHO05D006990 5.7e-22 108.6 123 48.0
FAN28G1963 Fragaria x ananassa HOM05D005734 ORTHO05D006990 2.2e-21 106.7 100 56.0
Lj2A474G36 Lonicera japonica HOM05D005734 ORTHO05D006990 3.8e-18 95.9 153 41.8
Medtr5g021780 Medicago truncatula HOM05D005734 ORTHO05D006990 1.4e-17 94.0 81 56.8
SMO228G0004 Selaginella moellendorffii HOM05D005734 ORTHO05D006990 1.9e-17 93.6 117 40.2
Gohir.D12G060400 Gossypium hirsutum HOM05D005734 ORTHO05D006990 9.4e-17 91.3 80 60.0
RcHm_v2.0_Chr2g0126361 Rosa chinensis HOM05D005734 ORTHO05D006990 7.9e-16 88.2 61 65.6
AagrBONN_evm.TU.Sc2ySwM_117.481 Anthoceros agrestis HOM05D005734 ORTHO05D006990 3.0e-15 86.3 139 37.4
Lj2C474G2 Lonicera japonica HOM05D005734 ORTHO05D006990 1.5e-14 84.0 63 68.3
HanXRQChr04g0110971 Helianthus annuus HOM05D000316 ORTHO05D012803 4.4e-06 55.8 63 54.0


User provided reference genes

Program Settings