Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s2814 Capsella rubella HOM05D008364 ORTHO05D009578 4.5e-70 267.7 126 100.0
AL8G45160 Arabidopsis lyrata HOM05D008364 ORTHO05D009578 2.8e-43 178.7 135 68.9
AT5G66370 Arabidopsis thaliana HOM05D008364 ORTHO05D009578 1.5e-36 156.4 141 62.4
BcaC06g33062 Brassica carinata HOM05D008364 ORTHO05D009578 5.2e-26 121.3 140 52.9
A09p44120 Brassica napus HOM05D008364 ORTHO05D009578 1.5e-25 119.8 137 51.8
BraA09t39871Z Brassica rapa HOM05D008364 ORTHO05D009578 1.5e-25 119.8 137 51.8
BcaC07g39580 Brassica carinata HOM05D008364 ORTHO05D009578 4.4e-25 118.2 137 51.1
C08p26320 Brassica napus HOM05D008364 ORTHO05D009578 4.4e-25 118.2 137 51.1
C07p46100 Brassica napus HOM05D008364 ORTHO05D009578 5.8e-25 117.9 140 52.1
BolC7t45126H Brassica oleracea HOM05D008364 ORTHO05D009578 5.8e-25 117.9 140 52.1
BolC8t50250H Brassica oleracea HOM05D008364 ORTHO05D009578 5.8e-25 117.9 137 51.1
BcaB01g00553 Brassica carinata HOM05D008364 ORTHO05D009578 7.6e-25 117.5 138 52.9
CARHR160600 Cardamine hirsuta HOM05D008364 ORTHO05D009578 1.7e-24 116.3 136 50.0
BraA03t13915Z Brassica rapa HOM05D008364 ORTHO05D009578 3.8e-24 115.2 133 51.1
A03p48080 Brassica napus HOM05D008364 ORTHO05D009578 1.9e-23 112.8 67 77.6
Sp5g11190 Schrenkiella parvula HOM05D008364 ORTHO05D009578 6.0e-22 107.8 137 49.6
AL5G31440 Arabidopsis lyrata HOM05D008364 ORTHO05D009578 7.8e-22 107.5 140 48.6
THA.LOC104820146 Tarenaya hassleriana HOM05D008364 ORTHO05D009578 3.3e-20 102.1 64 73.4
AT3G51020 Arabidopsis thaliana HOM05D008364 ORTHO05D009578 1.3e-19 100.1 125 49.6
Carub.0005s1742 Capsella rubella HOM05D008364 ORTHO05D009578 1.8e-18 96.3 143 44.8
THA.LOC109116996 Tarenaya hassleriana HOM05D008364 ORTHO05D009578 3.1e-18 95.5 129 44.2
Ciclev10010586m.g Citrus clementina HOM05D008364 ORTHO05D009578 5.6e-12 74.7 131 35.9
Sabra02G0008600 Salix brachista HOM05D008364 ORTHO05D009578 5.6e-12 74.7 84 41.7
Potri.002G011500 Populus trichocarpa HOM05D008364 ORTHO05D009578 9.6e-12 73.9 120 34.2
QL09p001451 Quercus lobata HOM05D008364 ORTHO05D009578 4.8e-11 71.6 123 33.3
Sabra02G0008900 Salix brachista HOM05D008364 ORTHO05D009578 6.2e-11 71.2 98 40.8
QL05p084023 Quercus lobata HOM05D008364 ORTHO05D009578 1.4e-10 70.1 63 46.0
Prupe.5G226000 Prunus persica HOM05D008364 ORTHO05D009578 4.0e-10 68.6 68 42.6
CiPaw.12G135100 Carya illinoinensis HOM05D008364 ORTHO05D009578 9.0e-10 67.4 104 36.5
Medtr3g089950 Medicago truncatula HOM05D008364 ORTHO05D009578 1.2e-09 67.0 57 47.4
Sabra05G0085600 Salix brachista HOM05D000192 ORTHO05D000123 1.2e-09 67.0 103 39.8
Atru.chr9.2110 Acer truncatum HOM05D009668 ORTHO05D009578 2.6e-09 65.9 93 38.7
COL.COLO4_09770 Corchorus olitorius HOM05D008364 ORTHO05D009578 2.6e-09 65.9 134 34.3
Prupe.3G304900 Prunus persica HOM05D008364 ORTHO05D009578 2.6e-09 65.9 59 49.2
Prupe.4G231200 Prunus persica HOM05D008364 ORTHO05D009578 3.4e-09 65.5 137 31.4
Potri.005G103500 Populus trichocarpa HOM05D008364 ORTHO05D009578 9.9e-09 63.9 113 33.6
Ciclev10007119m.g Citrus clementina HOM05D009668 ORTHO05D009578 2.2e-08 62.8 125 32.8
Gohir.A11G277632 Gossypium hirsutum HOM05D008364 ORTHO05D009578 4.9e-08 61.6 102 36.3
MD17G1012800 Malus domestica HOM05D008364 ORTHO05D009578 1.4e-07 60.1 58 48.3
Atru.chr1.58 Acer truncatum HOM05D009668 ORTHO05D009578 1.9e-07 59.7 85 36.5
Gorai.007G311400 Gossypium raimondii HOM05D008364 ORTHO05D009578 1.9e-07 59.7 101 33.7
QL08p061688 Quercus lobata HOM05D008364 ORTHO05D009578 1.9e-07 59.7 58 41.4
Haze_12861 Corylus avellana HOM05D000571 ORTHO05D000435 2.4e-07 59.3 108 33.3
Duzib213G0700 Durio zibethinus HOM05D008364 ORTHO05D009578 2.4e-07 59.3 132 32.6
Gohir.D11G287799 Gossypium hirsutum HOM05D008364 ORTHO05D009578 3.2e-07 58.9 101 33.7
COL.COLO4_09771 Corchorus olitorius HOM05D008364 ORTHO05D009578 9.3e-07 57.4 63 42.9
FvH4_6g53282 Fragaria vesca HOM05D009668 ORTHO05D009578 9.3e-07 57.4 61 37.7
FAN02G0808 Fragaria x ananassa HOM05D009668 ORTHO05D009578 9.3e-07 57.4 61 37.7
FAN09G4247 Fragaria x ananassa HOM05D009668 ORTHO05D009578 9.3e-07 57.4 61 37.7
FAN14G3007 Fragaria x ananassa HOM05D009668 ORTHO05D009578 9.3e-07 57.4 61 37.7
FvH4_3g23891 Fragaria vesca HOM05D008364 ORTHO05D009578 1.2e-06 57.0 132 36.4
FAN11G2266 Fragaria x ananassa HOM05D008364 ORTHO05D009578 1.2e-06 57.0 132 36.4
MD09G1012100 Malus domestica HOM05D008364 ORTHO05D009578 1.2e-06 57.0 60 43.3
Medtr7g109930 Medicago truncatula HOM05D008364 ORTHO05D009578 2.1e-06 56.2 60 41.7
Ca_09229_v3 Cicer arietinum L. HOM05D000049 ORTHO05D000027 2.7e-06 55.8 66 39.4
Duzib068G1047 Durio zibethinus HOM05D009668 ORTHO05D009578 4.6e-06 55.1 72 33.3
Medtr3g084890 Medicago truncatula HOM05D009668 ORTHO05D009578 4.6e-06 55.1 60 41.7
Gohir.A11G277700 Gossypium hirsutum HOM05D008364 ORTHO05D009578 6.0e-06 54.7 118 30.5
Cfa014398 Carpinus fangiana HOM05D000571 ORTHO05D000435 7.9e-06 54.3 73 43.8
Gohir.A11G277566 Gossypium hirsutum HOM05D004024 ORTHO05D004639 7.9e-06 54.3 55 47.3
Gorai.007G311500 Gossypium raimondii HOM05D008364 ORTHO05D009578 7.9e-06 54.3 122 30.3


User provided reference genes

Program Settings