Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s2766 Capsella rubella HOM05D012861 ORTHO05D006357 5.5e-295 1016.9 523 100.0
AT5G66820 Arabidopsis thaliana HOM05D012861 ORTHO05D006357 1.0e-179 634.0 533 69.0
AL8G44580 Arabidopsis lyrata HOM05D012861 ORTHO05D006357 5.5e-162 575.1 527 64.1
Sp2g29830 Schrenkiella parvula HOM05D012861 ORTHO05D006357 9.4e-146 521.2 541 59.3
Thhalv10004001m.g Eutrema salsugineum HOM05D012861 ORTHO05D006357 1.2e-143 514.2 531 58.8
CARHR280840 Cardamine hirsuta HOM05D012861 ORTHO05D006357 1.5e-143 513.8 527 59.2
BcaC06g34756 Brassica carinata HOM05D012861 ORTHO05D006357 3.4e-119 433.0 523 55.4
BolC7t43021H Brassica oleracea HOM05D012861 ORTHO05D006357 1.7e-118 430.6 528 54.9
A07p17060 Brassica napus HOM05D012861 ORTHO05D006357 1.1e-117 427.9 524 55.2
BraA07t29433Z Brassica rapa HOM05D012861 ORTHO05D006357 2.4e-117 426.8 524 55.2
C07p24920 Brassica napus HOM05D012861 ORTHO05D006357 9.5e-114 414.8 526 53.6
BcaB02g09983 Brassica carinata HOM05D012861 ORTHO05D006357 5.2e-104 382.5 532 51.3
Aa31LG1G15380 Aethionema arabicum HOM05D012861 ORTHO05D006357 3.2e-93 346.7 609 45.5
THA.LOC104804508 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 3.6e-52 210.3 468 39.1
THA.LOC104826201 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 3.6e-52 210.3 468 39.1
Ciclev10024721m.g Citrus clementina HOM05D006144 ORTHO05D006357 2.5e-29 134.4 505 29.7
Haze_15426 Corylus avellana HOM05D006144 ORTHO05D006357 9.4e-29 132.5 487 29.8
Atru.chr3.396 Acer truncatum HOM05D006144 ORTHO05D006357 8.0e-28 129.4 550 28.4
TAR381G1042 Trochodendron aralioides HOM05D006144 ORTHO05D006357 8.0e-28 129.4 551 27.0
Oeu049306.1 Olea europaea HOM05D006144 ORTHO05D006357 1.4e-27 128.6 399 34.1
Potri.005G136600 Populus trichocarpa HOM05D006144 ORTHO05D006357 8.8e-27 125.9 562 28.5
Duzib147G1467 Durio zibethinus HOM05D006144 ORTHO05D006357 4.4e-26 123.6 501 29.1
Gohir.A11G046100 Gossypium hirsutum HOM05D006144 ORTHO05D006357 2.8e-25 120.9 505 28.7
Gohir.D11G049700 Gossypium hirsutum HOM05D006144 ORTHO05D006357 8.3e-25 119.4 504 28.6
Cfa003998 Carpinus fangiana HOM05D006144 ORTHO05D006357 7.0e-24 116.3 488 28.9
Lj4C140T7 Lonicera japonica HOM05D006144 ORTHO05D006357 7.0e-24 116.3 518 27.6
CiPaw.01G021400 Carya illinoinensis HOM05D006144 ORTHO05D006357 9.1e-24 115.9 494 28.5
Gorai.007G053500 Gossypium raimondii HOM05D006144 ORTHO05D006357 9.1e-24 115.9 504 28.0
Thecc.01G052700 Theobroma cacao HOM05D006144 ORTHO05D006357 9.1e-24 115.9 526 28.7
COL.COLO4_22183 Corchorus olitorius HOM05D006144 ORTHO05D006357 2.0e-23 114.8 503 28.2
Solyc03g044620.4 Solanum lycopersicum HOM05D006144 ORTHO05D006357 2.0e-23 114.8 471 28.7
Potri.007G041300 Populus trichocarpa HOM05D006144 ORTHO05D006357 2.7e-23 114.4 512 28.1
TWI09G0039 Tripterygium wilfordii HOM05D006144 ORTHO05D006357 3.5e-23 114.0 522 27.8
QL06p042250 Quercus lobata HOM05D006144 ORTHO05D006357 4.5e-23 113.6 534 28.3
MELO3C007550.2 Cucumis melo HOM05D006144 ORTHO05D006357 1.0e-22 112.5 435 29.9
Sed0018548 Sechium edule HOM05D006144 ORTHO05D006357 1.3e-22 112.1 448 30.6
Sabra07G0036900 Salix brachista HOM05D006144 ORTHO05D006357 2.9e-22 110.9 283 35.0
CsaV3_6G043130 Cucumis sativus L. HOM05D006144 ORTHO05D006357 5.0e-22 110.2 442 28.3
Hma1.2p1_0200F.1_g086100 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 3.3e-21 107.5 449 29.4
Manes.12G100500 Manihot esculenta HOM05D006144 ORTHO05D006357 7.2e-21 106.3 484 27.5
Cpa.g.sc55.182 Carica papaya HOM05D006144 ORTHO05D006357 9.5e-21 105.9 559 27.4
CSS0009151 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 1.6e-20 105.1 516 27.1
Actinidia12060 Actinidia chinensis HOM05D006144 ORTHO05D006357 4.7e-20 103.6 503 26.8
Actinidia36503 Actinidia chinensis HOM05D006144 ORTHO05D006357 4.7e-20 103.6 504 27.6
Prupe.7G136200 Prunus persica HOM05D006144 ORTHO05D006357 4.7e-20 103.6 509 26.3
RcHm_v2.0_Chr2g0105021 Rosa chinensis HOM05D006144 ORTHO05D006357 4.7e-20 103.6 569 26.7
GSVIVG01002633001 Vitis vinifera HOM05D006144 ORTHO05D006357 4.7e-20 103.6 534 25.7
CSS0011451 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 6.1e-20 103.2 514 26.8
Sopen03g008900 Solanum pennellii HOM05D006144 ORTHO05D006357 8.0e-20 102.8 467 28.3
Nn5g30196 Nelumbo nucifera HOM05D006144 ORTHO05D006357 1.0e-19 102.4 556 27.5
MD15G1281500 Malus domestica HOM05D006144 ORTHO05D006357 1.4e-19 102.1 512 27.0
ClCG01G016710 Citrullus lanatus HOM05D006144 ORTHO05D006357 6.8e-19 99.8 454 27.1
CSS0044544 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 8.9e-19 99.4 469 28.1
CANSAT01G0270 Cannabis sativa HOM05D006144 ORTHO05D006357 1.5e-18 98.6 484 27.1
Cc07_g05860 Coffea canephora HOM05D006144 ORTHO05D006357 2.0e-18 98.2 512 27.5
Lalb_Chr09g0333701 Lupinus albus HOM05D006144 ORTHO05D006357 2.0e-18 98.2 487 27.3
Psat0s3889g0080 Pisum sativum HOM05D006144 ORTHO05D006357 4.4e-18 97.1 446 25.6
Ca_22186_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 7.5e-18 96.3 510 27.1
Nitab4.5_0000382g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 7.5e-18 96.3 510 26.7
FAN28G0789 Fragaria x ananassa HOM05D006144 ORTHO05D006357 9.8e-18 95.9 506 25.5
MD02G1169100 Malus domestica HOM05D006144 ORTHO05D006357 1.7e-17 95.1 524 26.0
vmacro05326 Vaccinium macrocarpon HOM05D006144 ORTHO05D006357 3.7e-17 94.0 477 27.9
FAN19G3143 Fragaria x ananassa HOM05D006144 ORTHO05D006357 6.3e-17 93.2 507 25.8
Lalb_Chr16g0388301 Lupinus albus HOM05D006144 ORTHO05D006357 6.3e-17 93.2 536 24.1
FvH4_1g15710 Fragaria vesca HOM05D006144 ORTHO05D006357 8.3e-17 92.8 507 25.8
Oeu003786.1 Olea europaea HOM05D006144 ORTHO05D006357 8.3e-17 92.8 475 27.4
Nitab4.5_0001684g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 1.1e-16 92.4 511 25.8
Migut.H00451 Erythranthe guttata HOM05D006144 ORTHO05D006357 1.8e-16 91.7 443 26.2
Dinv29969 Davidia involucrata HOM05D006144 ORTHO05D006357 4.1e-16 90.5 392 27.8
FAN26G0177 Fragaria x ananassa HOM05D006144 ORTHO05D006357 4.1e-16 90.5 509 25.5
Ah.03g144510 Amaranthus hybridus HOM05D006144 ORTHO05D006357 1.2e-15 89.0 409 29.3
FAN23G0857 Fragaria x ananassa HOM05D006144 ORTHO05D006357 4.5e-15 87.0 507 25.0
Aqoxy6G01406 Aquilegia oxysepala HOM05D006144 ORTHO05D006357 7.8e-15 86.3 442 25.6
Glyma.11G057500 Glycine max HOM05D006144 ORTHO05D006357 7.8e-15 86.3 527 25.4
PGSC0003DMG400019754 Solanum tuberosum HOM05D006144 ORTHO05D006357 2.3e-14 84.7 502 25.3
DCAR_025720 Daucus carota HOM05D006144 ORTHO05D006357 3.9e-14 84.0 506 24.5
MSTRG.2895 Avicennia marina HOM05D006144 ORTHO05D006357 5.0e-14 83.6 485 27.4
Nn1g05861 Nelumbo nucifera HOM05D006144 ORTHO05D006357 5.0e-14 83.6 178 36.5
Glyma.01G184700 Glycine max HOM05D006144 ORTHO05D006357 8.6e-14 82.8 527 25.6
Hund13563 Selenicereus undatus HOM05D006144 ORTHO05D006357 1.1e-13 82.4 451 28.4
EL10Ac6g15152 Beta vulgaris HOM05D006144 ORTHO05D006357 2.5e-13 81.3 407 27.3
CAN.G11.1 Capsicum annuum HOM05D006144 ORTHO05D006357 2.5e-13 81.3 504 24.2
arahy.Tifrunner.gnm1.ann1.AH11HU Arachis hypogaea HOM05D006144 ORTHO05D006357 3.3e-13 80.9 528 23.5
Lj2g0024358 Lotus japonicus HOM05D006144 ORTHO05D006357 4.3e-13 80.5 513 24.8
SGA_v2.0_scaffold204G41590 Striga asiatica HOM05D006144 ORTHO05D006357 4.3e-13 80.5 438 24.9
PSO675G0817 Papaver somniferum HOM05D006144 ORTHO05D006357 7.3e-13 79.7 396 30.1
Sc03g0001430 Simmondsia chinensis HOM05D006144 ORTHO05D006357 9.5e-13 79.3 438 27.2
Peaxi162Scf00183g00711 Petunia axillaris HOM05D006144 ORTHO05D006357 3.6e-12 77.4 510 24.7
arahy.Tifrunner.gnm1.ann1.IY5EPV Arachis hypogaea HOM05D006144 ORTHO05D006357 4.7e-12 77.0 528 24.1
Phvul.002G020300 Phaseolus vulgaris HOM05D006144 ORTHO05D006357 8.0e-12 76.3 533 24.4
Ca_24781_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 2.3e-11 74.7 444 24.8
Eucgr.H01999 Eucalyptus grandis HOM05D006144 ORTHO05D006357 6.8e-11 73.2 496 24.4
VMungo1215G0092 Vigna mungo HOM05D006144 ORTHO05D006357 6.8e-11 73.2 527 25.0
Rhsim10G0119800 Rhododendron simsii HOM05D006144 ORTHO05D006357 1.2e-10 72.4 316 29.4
Hma1.2p1_1415F.1_g282000 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 1.3e-09 68.9 442 24.7
TPR.G640 Trifolium pratense HOM05D006144 ORTHO05D006357 1.7e-09 68.6 211 29.4
HPP92_004081 Vanilla planifolia HOM05D006144 ORTHO05D006357 1.7e-09 68.6 460 25.4
PGR102G0121 Punica granatum HOM05D006144 ORTHO05D006357 2.2e-09 68.2 480 24.4
Zm00001eb006470 Zea mays HOM05D006144 ORTHO05D006357 2.2e-09 68.2 464 24.1
ECA232G0891 Erigeron canadensis HOM05D006144 ORTHO05D006357 3.7e-09 67.4 311 26.4
MSTRG.23764 Avicennia marina HOM05D006144 ORTHO05D006357 4.1e-08 63.9 481 25.8
Oeu004869.1 Olea europaea HOM05D006144 ORTHO05D006357 4.1e-08 63.9 499 25.1
ATR0104G015 Amborella trichopoda HOM05D006144 ORTHO05D006357 7.0e-08 63.2 337 25.5
Psat4g089200 Pisum sativum HOM05D006144 ORTHO05D006357 1.6e-07 62.0 246 26.4
Dinv29968 Davidia involucrata HOM05D000370 ORTHO05D001366 4.6e-07 60.5 118 39.8
Os03g0186500 Oryza sativa ssp. japonica HOM05D006144 ORTHO05D006357 1.0e-06 59.3 448 23.4
AUR62003855 Chenopodium quinoa HOM05D006144 ORTHO05D006357 1.3e-06 58.9 418 24.9
PSO541G4136 Papaver somniferum HOM05D006144 ORTHO05D006357 1.3e-06 58.9 382 26.7
Lsat_1_v5_gn_4_167780 Lactuca sativa HOM05D006144 ORTHO05D006357 6.6e-06 56.6 294 27.9
CDE03G0440 Ceratophyllum demersum HOM05D006144 ORTHO05D006357 8.6e-06 56.2 467 24.6


User provided reference genes

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