Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s2757 Capsella rubella HOM05D005053 ORTHO05D006206 2.7e-123 445.3 217 100.0
AL8G44450 Arabidopsis lyrata HOM05D005053 ORTHO05D006206 7.4e-121 437.2 217 97.7
CARHR280750 Cardamine hirsuta HOM05D005053 ORTHO05D006206 5.3e-119 431.0 217 95.9
AT5G66930 Arabidopsis thaliana HOM05D005053 ORTHO05D006206 5.9e-118 427.6 217 97.2
Aa31LG1G15480 Aethionema arabicum HOM05D005053 ORTHO05D006206 3.0e-114 415.2 217 91.2
Sp2g29730 Schrenkiella parvula HOM05D005053 ORTHO05D006206 2.6e-113 412.1 217 90.8
BcaB04g20086 Brassica carinata HOM05D005053 ORTHO05D006206 4.4e-113 411.4 218 91.3
Thhalv10005270m.g Eutrema salsugineum HOM05D005053 ORTHO05D006206 3.7e-112 408.3 209 94.3
THA.LOC104819229 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 5.9e-110 401.0 217 87.6
BraA09t36613Z Brassica rapa HOM05D005053 ORTHO05D006206 2.9e-109 398.7 216 88.4
A09p09640 Brassica napus HOM05D005053 ORTHO05D006206 3.8e-109 398.3 216 88.9
BcaC04g23174 Brassica carinata HOM05D005053 ORTHO05D006206 1.1e-108 396.7 219 88.6
C09p11390 Brassica napus HOM05D005053 ORTHO05D006206 1.1e-108 396.7 219 88.6
BolC9t54027H Brassica oleracea HOM05D005053 ORTHO05D006206 2.7e-107 392.1 220 88.2
BraA07t29424Z Brassica rapa HOM05D005053 ORTHO05D006206 1.8e-106 389.4 218 89.0
BcaC06g34767 Brassica carinata HOM05D005053 ORTHO05D006206 4.0e-106 388.3 218 88.1
C07p24820 Brassica napus HOM05D005053 ORTHO05D006206 4.0e-106 388.3 218 88.1
A07p16970 Brassica napus HOM05D005053 ORTHO05D006206 8.8e-106 387.1 218 88.1
Thecc.01G049700 Theobroma cacao HOM05D005053 ORTHO05D006206 5.7e-105 384.4 219 84.0
Gorai.008G072800 Gossypium raimondii HOM05D005053 ORTHO05D006206 2.8e-104 382.1 218 83.5
BcaB02g09970 Brassica carinata HOM05D005053 ORTHO05D006206 8.3e-104 380.6 218 86.7
Atru.chr3.440 Acer truncatum HOM05D005053 ORTHO05D006206 3.1e-103 378.6 218 83.0
COL.COLO4_11341 Corchorus olitorius HOM05D005053 ORTHO05D006206 3.1e-103 378.6 218 82.1
Manes.13G129200 Manihot esculenta HOM05D005053 ORTHO05D006206 1.2e-102 376.7 218 83.9
THA.LOC104821262 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 7.7e-102 374.0 218 83.5
Cpa.g.sc6.408 Carica papaya HOM05D005053 ORTHO05D006206 3.2e-100 368.6 218 82.1
BolC7t43007H Brassica oleracea HOM05D005053 ORTHO05D006206 3.6e-99 365.2 207 87.4
Ciclev10026393m.g Citrus clementina HOM05D005053 ORTHO05D006206 8.8e-98 360.5 236 76.3
RcHm_v2.0_Chr2g0104011 Rosa chinensis HOM05D005053 ORTHO05D006206 1.2e-97 360.1 220 79.1
MD02G1163200 Malus domestica HOM05D005053 ORTHO05D006206 3.4e-97 358.6 220 79.1
FvH4_1g14960 Fragaria vesca HOM05D005053 ORTHO05D006206 6.3e-96 354.4 221 78.3
FAN26G1713 Fragaria x ananassa HOM05D005053 ORTHO05D006206 8.3e-96 354.0 221 78.3
FAN23G1215 Fragaria x ananassa HOM05D005053 ORTHO05D006206 1.1e-95 353.6 221 77.8
FAN19G0163 Fragaria x ananassa HOM05D005053 ORTHO05D006206 4.1e-95 351.7 221 77.8
FAN28G1734 Fragaria x ananassa HOM05D005053 ORTHO05D006206 7.0e-95 350.9 222 78.4
Cfa003962 Carpinus fangiana HOM05D005053 ORTHO05D006206 9.2e-95 350.5 220 77.7
Potri.007G037800 Populus trichocarpa HOM05D005053 ORTHO05D006206 9.2e-95 350.5 218 78.4
Ca_22210_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 1.2e-94 350.1 220 77.7
MELO3C007534.2 Cucumis melo HOM05D005053 ORTHO05D006206 4.5e-94 348.2 221 76.5
GSVIVG01005060001 Vitis vinifera HOM05D005053 ORTHO05D006206 5.9e-94 347.8 220 78.6
ClCG01G016600 Citrullus lanatus HOM05D005053 ORTHO05D006206 7.7e-94 347.4 221 76.0
CsaV3_6G042980 Cucumis sativus L. HOM05D005053 ORTHO05D006206 1.0e-93 347.1 221 76.0
MD15G1276200 Malus domestica HOM05D005053 ORTHO05D006206 1.0e-93 347.1 218 77.5
PGR102G2816 Punica granatum HOM05D005053 ORTHO05D006206 1.3e-93 346.7 220 78.2
Glyma.17G180900 Glycine max HOM05D005053 ORTHO05D006206 2.3e-93 345.9 220 76.8
Lalb_Chr09g0333681 Lupinus albus HOM05D005053 ORTHO05D006206 2.3e-93 345.9 220 76.8
Sed0021889 Sechium edule HOM05D005053 ORTHO05D006206 2.3e-93 345.9 220 76.8
Aqoxy6G00906 Aquilegia oxysepala HOM05D005053 ORTHO05D006206 2.9e-93 345.5 220 76.8
Cc07_g05640 Coffea canephora HOM05D005053 ORTHO05D006206 5.0e-93 344.7 220 76.8
Actinidia36514 Actinidia chinensis HOM05D005053 ORTHO05D006206 1.1e-92 343.6 220 78.6
Lj4g0026236 Lotus japonicus HOM05D005053 ORTHO05D006206 1.1e-92 343.6 220 76.4
Medtr8g079240 Medicago truncatula HOM05D005053 ORTHO05D006206 1.1e-92 343.6 220 75.5
Lsat_1_v5_gn_2_86920 Lactuca sativa HOM05D005053 ORTHO05D006206 1.5e-92 343.2 220 76.4
arahy.Tifrunner.gnm1.ann1.IMYE37 Arachis hypogaea HOM05D005053 ORTHO05D006206 1.9e-92 342.8 220 76.4
arahy.Tifrunner.gnm1.ann1.VE46QQ Arachis hypogaea HOM05D005053 ORTHO05D006206 1.9e-92 342.8 220 76.4
Hma1.2p1_0687F.1_g203520 Hydrangea macrophylla HOM05D005053 ORTHO05D006206 2.5e-92 342.4 219 75.8
Actinidia12070 Actinidia chinensis HOM05D005053 ORTHO05D006206 4.3e-92 341.7 219 77.6
CSS0024932 Camellia sinensis var. sinensis HOM05D005053 ORTHO05D006206 4.3e-92 341.7 220 75.9
Phvul.003G248000 Phaseolus vulgaris HOM05D005053 ORTHO05D006206 4.3e-92 341.7 220 75.9
AUR62001971 Chenopodium quinoa HOM05D005053 ORTHO05D006206 7.3e-92 340.9 219 74.9
PSO541G4895 Papaver somniferum HOM05D005053 ORTHO05D006206 1.2e-91 340.1 220 76.4
Gohir.A12G069100 Gossypium hirsutum HOM05D005053 ORTHO05D006206 2.1e-91 339.3 192 84.4
PSO675G4006 Papaver somniferum HOM05D005053 ORTHO05D006206 2.1e-91 339.3 220 75.9
Migut.H00475 Erythranthe guttata HOM05D005053 ORTHO05D006206 2.8e-91 339.0 219 75.3
HanXRQChr14g0448331 Helianthus annuus HOM05D005053 ORTHO05D006206 3.6e-91 338.6 220 75.5
VMungo0251G0766 Vigna mungo HOM05D005053 ORTHO05D006206 3.6e-91 338.6 220 76.4
HanXRQChr07g0199901 Helianthus annuus HOM05D005053 ORTHO05D006206 8.0e-91 337.4 220 75.0
Oeu004887.1 Olea europaea HOM05D005053 ORTHO05D006206 8.0e-91 337.4 219 76.3
Gohir.D12G090200 Gossypium hirsutum HOM05D005053 ORTHO05D006206 1.4e-90 336.7 192 82.8
vmacro17912 Vaccinium macrocarpon HOM05D005053 ORTHO05D006206 1.8e-90 336.3 220 73.2
EL10Ac6g15144 Beta vulgaris HOM05D005053 ORTHO05D006206 5.2e-90 334.7 219 73.5
Sc03g0001310 Simmondsia chinensis HOM05D005053 ORTHO05D006206 5.2e-90 334.7 217 73.3
ECA238G1636 Erigeron canadensis HOM05D005053 ORTHO05D006206 6.8e-90 334.3 220 75.5
TAR376G0500 Trochodendron aralioides HOM05D005053 ORTHO05D006206 8.9e-90 334.0 220 75.5
Duzib264G0045 Durio zibethinus HOM05D005053 ORTHO05D006206 1.1e-87 327.0 192 80.2
Hund13583 Selenicereus undatus HOM05D005053 ORTHO05D006206 1.1e-87 327.0 220 71.4
Duzib147G0596 Durio zibethinus HOM05D005053 ORTHO05D006206 1.4e-87 326.6 192 82.3
MSTRG.15402 Avicennia marina HOM05D005053 ORTHO05D006206 3.2e-87 325.5 229 71.6
BcaC03g18393 Brassica carinata HOM05D005053 ORTHO05D006206 5.4e-87 324.7 226 77.4
C02p64670 Brassica napus HOM05D005053 ORTHO05D006206 5.4e-87 324.7 226 77.4
Haze_15460 Corylus avellana HOM05D005053 ORTHO05D006206 7.0e-87 324.3 233 71.2
Eucgr.H01988 Eucalyptus grandis HOM05D005053 ORTHO05D006206 9.2e-87 323.9 220 72.7
CAN.G470.7 Capsicum annuum HOM05D005053 ORTHO05D006206 1.6e-86 323.2 219 72.1
Duzib264G0685 Durio zibethinus HOM05D005053 ORTHO05D006206 1.6e-86 323.2 192 79.7
QL06p043337 Quercus lobata HOM05D005053 ORTHO05D006206 3.5e-86 322.0 195 79.5
BolC2t12528H Brassica oleracea HOM05D005053 ORTHO05D006206 1.3e-85 320.1 221 77.8
Solyc02g065180.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 1.3e-85 320.1 219 72.6
Sopen02g015310 Solanum pennellii HOM05D005053 ORTHO05D006206 1.3e-85 320.1 219 72.6
TWI53G1273 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 1.3e-85 320.1 193 79.8
unitig_736.g22369 Utricularia gibba HOM05D005053 ORTHO05D006206 1.3e-85 320.1 221 71.5
TWI09G0689 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 3.9e-85 318.5 196 78.1
Nn6g32115 Nelumbo nucifera HOM05D005053 ORTHO05D006206 8.6e-85 317.4 221 70.6
SGA_v2.0_scaffold27G11440 Striga asiatica HOM05D005053 ORTHO05D006206 2.5e-84 315.8 221 71.5
Nitab4.5_0000806g0140 Nicotiana tabacum HOM05D005053 ORTHO05D006206 4.3e-84 315.1 219 71.2
SGA_v2.0_scaffold204G41608 Striga asiatica HOM05D005053 ORTHO05D006206 5.6e-84 314.7 221 71.0
ATR0225G009 Amborella trichopoda HOM05D005053 ORTHO05D006206 9.5e-84 313.9 220 70.0
Dinv29944 Davidia involucrata HOM05D005053 ORTHO05D006206 2.8e-83 312.4 198 79.3
Nn5g29376 Nelumbo nucifera HOM05D005053 ORTHO05D006206 2.8e-83 312.4 220 71.4
HPP92_024294 Vanilla planifolia HOM05D005053 ORTHO05D006206 2.8e-83 312.4 220 69.5
HPP92_024303 Vanilla planifolia HOM05D005053 ORTHO05D006206 2.8e-83 312.4 220 69.5
CiPaw.01G025900 Carya illinoinensis HOM05D005053 ORTHO05D006206 1.8e-82 309.7 196 75.5
Ca_22228_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 1.8e-82 309.7 194 77.8
Peaxi162Scf00049g01010 Petunia axillaris HOM05D005053 ORTHO05D006206 1.5e-81 306.6 232 67.2
SEGI_13826 Sequoiadendron giganteum HOM05D005053 ORTHO05D006206 2.0e-81 306.2 219 66.2
TAR628G0491 Trochodendron aralioides HOM05D005053 ORTHO05D006206 3.4e-81 305.4 193 77.2
AUR62003832 Chenopodium quinoa HOM05D005053 ORTHO05D006206 7.5e-81 304.3 193 76.2
Sabra07G0034100 Salix brachista HOM05D005053 ORTHO05D006206 2.7e-78 295.8 195 75.4
Rhsim08G0104900 Rhododendron simsii HOM05D005053 ORTHO05D006206 5.0e-77 291.6 300 53.7
Ah.02g124120 Amaranthus hybridus HOM05D005053 ORTHO05D006206 8.6e-77 290.8 210 66.7
MBI16_g19902_MAGBIO Magnolia biondii HOM05D005053 ORTHO05D006206 3.3e-76 288.9 179 78.8
SMO271G0126 Selaginella moellendorffii HOM05D005053 ORTHO05D006206 5.2e-74 281.6 218 60.1
Mapoly0011s0084 Marchantia polymorpha HOM05D005053 ORTHO05D006206 6.8e-74 281.2 219 62.1
Os12g0428200 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 8.9e-74 280.8 218 62.4
Nitab4.5_0009901g0010 Nicotiana tabacum HOM05D005053 ORTHO05D006206 4.9e-72 275.0 204 67.6
CiPaw.02G011700 Carya illinoinensis HOM05D005053 ORTHO05D006206 8.3e-72 274.2 221 65.6
RhsimUnG0070600 Rhododendron simsii HOM05D005053 ORTHO05D006206 7.1e-71 271.2 289 52.2
Peaxi162Scf00993g00120 Petunia axillaris HOM05D005053 ORTHO05D006206 9.2e-71 270.8 192 69.8
Solyc02g090330.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 3.0e-69 265.8 213 61.5
PGSC0003DMG400010070 Solanum tuberosum HOM05D005053 ORTHO05D006206 4.3e-68 261.9 213 61.0
Zm00001eb184240 Zea mays HOM05D005053 ORTHO05D006206 1.6e-67 260.0 218 60.1
Lj7A44T18 Lonicera japonica HOM05D005053 ORTHO05D006206 4.0e-66 255.4 179 73.2
Dinv39902 Davidia involucrata HOM05D005053 ORTHO05D006206 8.9e-66 254.2 172 73.3
Pp3c11_5110 Physcomitrium patens HOM05D005053 ORTHO05D006206 5.8e-65 251.5 221 57.0
DCAR_025697 Daucus carota HOM05D005053 ORTHO05D006206 9.9e-65 250.8 169 74.0
Os12g0446700 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 1.4e-63 246.9 192 62.0
Prupe.7G140800 Prunus persica HOM05D005053 ORTHO05D006206 3.5e-62 242.3 163 73.6
AagrBONN_evm.TU.Sc2ySwM_344.1822 Anthoceros agrestis HOM05D005053 ORTHO05D006206 1.0e-61 240.7 224 54.0
AagrBONN_evm.TU.Sc2ySwM_344.1821 Anthoceros agrestis HOM05D005053 ORTHO05D006206 1.5e-60 236.9 194 59.8
CBR_g23008 Chara braunii HOM05D005053 ORTHO05D006206 1.5e-60 236.9 221 53.4
Psat4g088960 Pisum sativum HOM05D005053 ORTHO05D006206 2.0e-57 226.5 158 72.8
Nitab4.5_0002157g0070 Nicotiana tabacum HOM05D005053 ORTHO05D006206 1.4e-55 220.3 169 66.9
Ah.03g144090 Amaranthus hybridus HOM05D005053 ORTHO05D006206 7.8e-54 214.5 195 59.0
AagrBONN_evm.TU.Sc2ySwM_369.468 Anthoceros agrestis HOM05D000050 ORTHO05D000771 4.9e-48 195.3 218 48.6
Psat4g089040 Pisum sativum HOM05D005053 ORTHO05D006206 7.9e-46 188.0 182 55.5
Sopen02g035010 Solanum pennellii HOM05D005053 ORTHO05D006206 3.0e-45 186.0 161 57.8
CDE02G0556 Ceratophyllum demersum HOM05D005053 ORTHO05D006206 3.3e-44 182.6 150 60.0
TPR.G40637 Trifolium pratense HOM05D005053 ORTHO05D006206 2.8e-43 179.5 93 87.1
MCO07G250 Micromonas commoda HOM05D005053 ORTHO05D006206 1.6e-35 153.7 220 35.5
SGA_v2.0_scaffold15G07238 Striga asiatica HOM05D005053 ORTHO05D006206 6.2e-35 151.8 246 40.2
Cre07.g334700 Chlamydomonas reinhardtii HOM05D005053 ORTHO05D006206 4.0e-34 149.1 228 35.5
FAN19G1388 Fragaria x ananassa HOM05D005053 ORTHO05D006206 1.4e-31 140.6 84 79.8
PRCOL_00006110 Prasinoderma coloniale HOM05D005053 ORTHO05D006206 6.0e-30 135.2 215 36.7
Zm00001eb184160 Zea mays HOM05D005053 ORTHO05D006206 2.3e-29 133.3 84 70.2
TPR.G672 Trifolium pratense HOM05D005053 ORTHO05D006206 2.5e-28 129.8 100 69.0
Nitab4.5_0003750g0060 Nicotiana tabacum HOM05D005053 ORTHO05D006206 1.4e-23 114.0 140 45.7
Ciclev10027037m.g Citrus clementina HOM05D005053 ORTHO05D006206 4.6e-22 109.0 77 74.0
AUR62028910 Chenopodium quinoa HOM05D005053 ORTHO05D006206 9.7e-20 101.3 92 54.3
CAN.G836.41 Capsicum annuum HOM05D005053 ORTHO05D024763 4.5e-09 65.9 145 37.9
Cfa024505 Carpinus fangiana HOM05D005053 ORTHO05D124968 1.4e-07 60.8 186 22.6


User provided reference genes

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