Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s2721 Capsella rubella HOM05D005694 ORTHO05D007402 1.0e-232 809.7 410 100.0
AT5G67290 Arabidopsis thaliana HOM05D005694 ORTHO05D007402 6.4e-206 720.7 406 90.4
CARHR280330 Cardamine hirsuta HOM05D005694 ORTHO05D007402 3.5e-204 714.9 405 88.6
AL8G44040 Arabidopsis lyrata HOM05D005694 ORTHO05D007402 4.7e-201 704.5 379 92.6
BcaC05g29844 Brassica carinata HOM05D005694 ORTHO05D007402 1.2e-196 689.9 411 84.9
BolC5t34672H Brassica oleracea HOM05D005694 ORTHO05D007402 1.2e-196 689.9 411 84.9
Thhalv10004317m.g Eutrema salsugineum HOM05D005694 ORTHO05D007402 3.0e-195 685.3 411 84.9
C05p60220 Brassica napus HOM05D005694 ORTHO05D007402 4.7e-193 677.9 436 80.0
BcaB06g28844 Brassica carinata HOM05D005694 ORTHO05D007402 3.4e-191 671.8 417 83.0
BraA05t22832Z Brassica rapa HOM05D005694 ORTHO05D007402 1.7e-190 669.5 414 83.3
Sp2g29370 Schrenkiella parvula HOM05D005694 ORTHO05D007402 9.2e-189 663.7 379 88.1
A05p41050 Brassica napus HOM05D005694 ORTHO05D007402 2.3e-187 659.1 379 86.3
Aa31LG1G15820 Aethionema arabicum HOM05D005694 ORTHO05D007402 1.7e-174 616.3 379 81.0
Thecc.01G063300 Theobroma cacao HOM05D005694 ORTHO05D007402 7.4e-162 574.3 384 74.0
Prupe.6G229100 Prunus persica HOM05D005694 ORTHO05D007402 3.7e-161 572.0 401 71.1
THA.LOC104819246 Tarenaya hassleriana HOM05D005694 ORTHO05D007402 4.8e-161 571.6 372 75.5
COL.COLO4_11482 Corchorus olitorius HOM05D005694 ORTHO05D007402 6.2e-161 571.2 424 68.4
Gorai.007G218000 Gossypium raimondii HOM05D005694 ORTHO05D007402 4.0e-160 568.5 396 71.5
Gohir.D11G203300 Gossypium hirsutum HOM05D005694 ORTHO05D007402 1.7e-158 563.1 376 73.7
Duzib264G0643 Durio zibethinus HOM05D005694 ORTHO05D007402 3.8e-158 562.0 376 73.4
RcHm_v2.0_Chr2g0106661 Rosa chinensis HOM05D005694 ORTHO05D007402 8.4e-158 560.8 365 75.3
Cpa.g.sc6.99 Carica papaya HOM05D005694 ORTHO05D007402 2.3e-155 552.7 418 68.7
FvH4_1g16760 Fragaria vesca HOM05D005694 ORTHO05D007402 2.5e-154 549.3 398 70.4
Lj4g0009127 Lotus japonicus HOM05D005694 ORTHO05D007402 2.5e-154 549.3 366 73.8
FAN23G2399 Fragaria x ananassa HOM05D005694 ORTHO05D007402 2.1e-153 546.2 398 69.6
Lsat_1_v5_gn_3_88661 Lactuca sativa HOM05D005694 ORTHO05D007402 1.1e-152 543.9 398 68.8
Ciclev10025664m.g Citrus clementina HOM05D005694 ORTHO05D007402 9.0e-152 540.8 400 68.0
Sabra05G0051000 Salix brachista HOM05D005694 ORTHO05D007402 9.0e-152 540.8 370 71.9
Haze_15351 Corylus avellana HOM05D005694 ORTHO05D007402 2.0e-151 539.7 410 67.8
Glyma.17G167200 Glycine max HOM05D005694 ORTHO05D007402 2.0e-151 539.7 412 67.0
arahy.Tifrunner.gnm1.ann1.ZT89Y7 Arachis hypogaea HOM05D005694 ORTHO05D007402 1.0e-150 537.3 394 67.3
MELO3C007585.2 Cucumis melo HOM05D005694 ORTHO05D007402 1.3e-150 537.0 401 67.8
Ca_22124_v3 Cicer arietinum L. HOM05D005694 ORTHO05D007402 1.7e-150 536.6 375 70.9
MD02G1178800 Malus domestica HOM05D005694 ORTHO05D007402 2.9e-150 535.8 361 72.9
FAN19G0282 Fragaria x ananassa HOM05D005694 ORTHO05D007402 3.8e-150 535.4 398 69.1
Psat4g084360 Pisum sativum HOM05D005694 ORTHO05D007402 3.8e-150 535.4 402 67.7
VMungo0251G0564 Vigna mungo HOM05D005694 ORTHO05D007402 3.8e-150 535.4 402 66.2
Cfa004061 Carpinus fangiana HOM05D005694 ORTHO05D007402 5.0e-150 535.0 412 66.3
FAN26G1197 Fragaria x ananassa HOM05D005694 ORTHO05D007402 8.4e-150 534.3 398 68.8
Oeu037163.1 Olea europaea HOM05D005694 ORTHO05D007402 3.2e-149 532.3 369 70.2
Potri.005G060500 Populus trichocarpa HOM05D005694 ORTHO05D007402 4.2e-149 531.9 370 70.0
SGA_v2.0_scaffold143G35788 Striga asiatica HOM05D005694 ORTHO05D007402 5.5e-149 531.6 371 70.1
CANSAT25G2140 Cannabis sativa HOM05D005694 ORTHO05D007402 7.1e-149 531.2 386 69.4
ClCG01G017080 Citrullus lanatus HOM05D005694 ORTHO05D007402 1.2e-148 530.4 402 67.4
Phvul.003G240300 Phaseolus vulgaris HOM05D005694 ORTHO05D007402 1.2e-148 530.4 402 66.2
Duzib147G1433 Durio zibethinus HOM05D005694 ORTHO05D007402 1.6e-148 530.0 381 70.3
CANSAT25G0291 Cannabis sativa HOM05D005694 ORTHO05D007402 3.5e-148 528.9 409 66.5
Manes.12G108400 Manihot esculenta HOM05D005694 ORTHO05D007402 3.5e-148 528.9 368 71.2
CsaV3_6G043550 Cucumis sativus L. HOM05D005694 ORTHO05D007402 4.6e-148 528.5 400 66.8
Nitab4.5_0002657g0010 Nicotiana tabacum HOM05D005694 ORTHO05D007402 4.6e-148 528.5 376 68.1
Solyc03g044190.3 Solanum lycopersicum HOM05D005694 ORTHO05D007402 4.6e-148 528.5 366 69.4
Sopen03g008170 Solanum pennellii HOM05D005694 ORTHO05D007402 6.1e-148 528.1 366 69.4
QL06p040237 Quercus lobata HOM05D005694 ORTHO05D007402 7.9e-148 527.7 426 65.5
Medtr4g094962 Medicago truncatula HOM05D005694 ORTHO05D007402 1.0e-147 527.3 393 67.7
Gohir.A11G220300 Gossypium hirsutum HOM05D005694 ORTHO05D007402 1.3e-147 526.9 377 70.3
AUR62003938 Chenopodium quinoa HOM05D005694 ORTHO05D007402 1.8e-147 526.6 387 66.9
PGR004G1079 Punica granatum HOM05D005694 ORTHO05D007402 6.7e-147 524.6 418 65.3
CiPaw.01G012900 Carya illinoinensis HOM05D005694 ORTHO05D007402 1.1e-146 523.9 393 67.9
AUR62038254 Chenopodium quinoa HOM05D005694 ORTHO05D007402 1.5e-146 523.5 386 66.3
Hund16366 Selenicereus undatus HOM05D005694 ORTHO05D007402 1.5e-146 523.5 368 70.4
Nitab4.5_0003962g0030 Nicotiana tabacum HOM05D005694 ORTHO05D007402 2.5e-146 522.7 368 68.8
TPR.G23863 Trifolium pratense HOM05D005694 ORTHO05D007402 2.5e-146 522.7 404 66.6
Migut.H00394 Erythranthe guttata HOM05D005694 ORTHO05D007402 3.3e-146 522.3 392 67.9
Lalb_Chr16g0388811 Lupinus albus HOM05D005694 ORTHO05D007402 7.4e-146 521.2 376 68.4
Sed0004561 Sechium edule HOM05D005694 ORTHO05D007402 1.3e-145 520.4 415 65.1
PGSC0003DMG400014873 Solanum tuberosum HOM05D005694 ORTHO05D007402 1.3e-145 520.4 369 68.8
HanXRQChr12g0377261 Helianthus annuus HOM05D005694 ORTHO05D007402 2.2e-145 519.6 387 67.4
EL10Ac6g15690 Beta vulgaris HOM05D005694 ORTHO05D007402 2.8e-145 519.2 374 70.1
Atru.chr3.251 Acer truncatum HOM05D005694 ORTHO05D007402 3.7e-145 518.8 376 67.6
MSTRG.2849 Avicennia marina HOM05D005694 ORTHO05D007402 3.1e-144 515.8 385 66.8
Peaxi162Scf00365g00618 Petunia axillaris HOM05D005694 ORTHO05D007402 3.4e-143 512.3 374 67.6
CSS0006569 Camellia sinensis var. sinensis HOM05D005694 ORTHO05D007402 4.5e-143 511.9 366 70.5
PSO541G0377 Papaver somniferum HOM05D005694 ORTHO05D007402 4.5e-143 511.9 371 67.1
Aqoxy6G02871 Aquilegia oxysepala HOM05D005694 ORTHO05D007402 2.2e-142 509.6 425 61.4
arahy.Tifrunner.gnm1.ann1.MA1EVV Arachis hypogaea HOM05D005694 ORTHO05D007402 2.2e-142 509.6 461 57.5
Actinidia12019 Actinidia chinensis HOM05D005694 ORTHO05D007402 2.5e-141 506.1 419 63.7
ECA246G1807 Erigeron canadensis HOM05D005694 ORTHO05D007402 3.2e-141 505.8 399 64.4
Glyma.05G097800 Glycine max HOM05D005694 ORTHO05D007402 3.2e-141 505.8 365 70.1
Rhsim10G0112600 Rhododendron simsii HOM05D005694 ORTHO05D007402 4.2e-141 505.4 416 62.5
PSO675G2151 Papaver somniferum HOM05D005694 ORTHO05D007402 2.0e-138 496.5 408 62.0
Lj4g0018653 Lotus japonicus HOM05D005694 ORTHO05D007402 3.3e-138 495.7 369 68.6
DCAR_025759 Daucus carota HOM05D005694 ORTHO05D007402 5.7e-138 495.0 346 70.2
TAR625G0317 Trochodendron aralioides HOM05D005694 ORTHO05D007402 1.7e-137 493.4 379 65.7
Nn1g04704 Nelumbo nucifera HOM05D005694 ORTHO05D007402 1.5e-135 486.9 357 68.3
TAR381G0027 Trochodendron aralioides HOM05D005694 ORTHO05D007402 4.5e-135 485.3 365 66.3
TAR381G0285 Trochodendron aralioides HOM05D005694 ORTHO05D007402 4.5e-135 485.3 365 66.3
Eucgr.I00787 Eucalyptus grandis HOM05D005694 ORTHO05D007402 1.0e-134 484.2 380 66.1
Eucgr.I00761 Eucalyptus grandis HOM05D005694 ORTHO05D007402 1.3e-134 483.8 380 66.3
Sc16g0005230 Simmondsia chinensis HOM05D005694 ORTHO05D007402 1.7e-134 483.4 376 63.0
TAR625G0863 Trochodendron aralioides HOM05D005694 ORTHO05D007402 7.2e-133 478.0 367 65.7
unitig_46.g18707 Utricularia gibba HOM05D005694 ORTHO05D007402 2.3e-131 473.0 371 63.6
Dinv26866 Davidia involucrata HOM05D005694 ORTHO05D007402 2.8e-129 466.1 365 65.8
Cc11_g04760 Coffea canephora HOM05D005694 ORTHO05D007402 3.1e-128 462.6 379 62.3
ATR1098G030 Amborella trichopoda HOM05D005694 ORTHO05D007402 5.5e-125 451.8 382 61.3
Sc16g0005220 Simmondsia chinensis HOM05D005694 ORTHO05D007402 1.4e-123 447.2 376 59.3
vmacro05254 Vaccinium macrocarpon HOM05D005694 ORTHO05D007402 3.1e-120 436.0 396 59.6
CDE06G0326 Ceratophyllum demersum HOM05D005694 ORTHO05D007402 5.3e-120 435.3 363 59.5
HPP92_017733 Vanilla planifolia HOM05D005694 ORTHO05D007402 8.5e-118 427.9 364 61.8
Os07g0155100 Oryza sativa ssp. japonica HOM05D005694 ORTHO05D007402 4.7e-116 422.2 382 58.4
SEGI_26559 Sequoiadendron giganteum HOM05D005694 ORTHO05D007402 6.1e-116 421.8 385 56.1
Mapoly0178s0017 Marchantia polymorpha HOM05D005694 ORTHO05D007402 1.4e-115 420.6 372 57.8
Zm00001eb300250 Zea mays HOM05D005694 ORTHO05D007402 8.8e-115 417.9 381 58.8
Pp3c14_12180 Physcomitrium patens HOM05D005694 ORTHO05D007402 1.5e-114 417.2 381 59.3
Dinv30033 Davidia involucrata HOM05D005694 ORTHO05D007402 1.1e-112 411.0 356 60.1
AagrBONN_evm.TU.Sc2ySwM_117.3787 Anthoceros agrestis HOM05D005694 ORTHO05D007402 1.8e-112 410.2 387 55.8
SMO351G0208 Selaginella moellendorffii HOM05D005694 ORTHO05D007402 5.5e-109 398.7 396 53.0
HanXRQChr02g0044351 Helianthus annuus HOM05D005694 ORTHO05D007402 8.8e-107 391.3 376 54.5
Aa31LG1G15830 Aethionema arabicum HOM05D005694 ORTHO05D007402 9.8e-106 387.9 226 81.9
ECA238G4251 Erigeron canadensis HOM05D005694 ORTHO05D007402 9.8e-106 387.9 378 55.3
SMO367G0384 Selaginella moellendorffii HOM05D005694 ORTHO05D007402 3.5e-103 379.4 381 51.4
Lj7C77T1 Lonicera japonica HOM05D005694 ORTHO05D007402 3.9e-94 349.4 278 65.5
HPP92_017700 Vanilla planifolia HOM05D005694 ORTHO05D007402 1.1e-93 347.8 315 59.4
SEGI_01647 Sequoiadendron giganteum HOM05D005694 ORTHO05D007402 7.3e-93 345.1 368 50.0
Mapoly0178s0018 Marchantia polymorpha HOM05D005694 ORTHO05D007402 1.9e-88 330.5 314 55.7
CAN.G572.58 Capsicum annuum HOM05D005694 ORTHO05D007402 5.0e-86 322.4 267 61.4
Cre16.g671450 Chlamydomonas reinhardtii HOM05D005694 ORTHO05D007402 2.8e-76 290.0 396 43.4
FAN28G1711 Fragaria x ananassa HOM05D005694 ORTHO05D007402 1.3e-70 271.2 172 74.4
FAN28G1889 Fragaria x ananassa HOM05D005694 ORTHO05D007402 1.3e-70 271.2 172 74.4
MCO03G407 Micromonas commoda HOM05D005694 ORTHO05D007402 3.2e-64 250.0 381 42.3
Actinidia36463 Actinidia chinensis HOM05D005694 ORTHO05D007402 5.6e-53 212.6 166 60.8
Aa31sc2295G20 Aethionema arabicum HOM05D005694 ORTHO05D007402 1.9e-48 197.6 130 77.7
MCO09G374 Micromonas commoda HOM05D005694 ORTHO05D007402 4.2e-48 196.4 400 35.2
Aa31LG1G15840 Aethionema arabicum HOM05D005694 ORTHO05D007402 2.7e-47 193.7 145 74.5
Aa31LG1G18440 Aethionema arabicum HOM05D005694 ORTHO05D007402 6.2e-44 182.6 193 56.5
Lj7A77T5 Lonicera japonica HOM05D005694 ORTHO05D007402 1.4e-40 171.4 147 57.8
Cfa023451 Carpinus fangiana HOM05D000115 ORTHO05D005317 8.7e-38 162.2 405 34.1
Medtr8g072720 Medicago truncatula HOM05D005694 ORTHO05D007402 9.7e-29 132.1 83 77.1
PRCOL_00002834 Prasinoderma coloniale HOM05D005694 ORTHO05D007402 1.7e-25 121.3 392 28.8
BcaC07g37383 Brassica carinata HOM05D005694 ORTHO05D031998 8.5e-17 92.4 108 52.8
BolC8t47687H Brassica oleracea HOM05D005694 ORTHO05D031998 8.5e-17 92.4 108 52.8
BolC8t47689H Brassica oleracea HOM05D005694 ORTHO05D031998 8.5e-17 92.4 108 52.8
Aa31LG1G18450 Aethionema arabicum HOM05D005694 ORTHO05D007402 1.8e-14 84.7 73 60.3
Aa31sc2295G10 Aethionema arabicum HOM05D005694 ORTHO05D007402 1.8e-14 84.7 73 60.3
BcaNung00805 Brassica carinata HOM05D005694 ORTHO05D007402 5.1e-14 83.2 72 61.1
Cfa026332 Carpinus fangiana HOM05D005694 ORTHO05D123404 1.2e-07 62.0 273 26.4
Os01g0594800 Oryza sativa ssp. japonica HOM05D005694 ORTHO05D007402 1.6e-07 61.6 86 41.9
HPP92_028926 Vanilla planifolia HOM05D005694 ORTHO05D427666 8.8e-06 55.8 222 30.2


User provided reference genes

Program Settings