Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s2714 Capsella rubella HOM05D005407 ORTHO05D006544 6.3e-110 401.4 304 100.0
AL8G43980 Arabidopsis lyrata HOM05D005407 ORTHO05D006544 1.8e-88 330.1 276 87.7
AT5G67350 Arabidopsis thaliana HOM05D005407 ORTHO05D006544 3.9e-83 312.4 315 84.4
CARHR280260 Cardamine hirsuta HOM05D005407 ORTHO05D006544 1.2e-79 300.8 271 83.8
BcaC04g19788 Brassica carinata HOM05D005407 ORTHO05D006544 7.3e-74 281.6 269 68.8
BolC9t53999H Brassica oleracea HOM05D005407 ORTHO05D006544 1.2e-73 280.8 269 79.2
C09p51650 Brassica napus HOM05D005407 ORTHO05D006544 2.1e-73 280.0 269 68.4
BolC9t58026H Brassica oleracea HOM05D005407 ORTHO05D006544 2.1e-73 280.0 269 68.4
C09p11100 Brassica napus HOM05D005407 ORTHO05D006544 4.7e-73 278.9 269 79.9
BcaC04g23209 Brassica carinata HOM05D005407 ORTHO05D006544 1.1e-72 277.7 269 78.4
A09p09420 Brassica napus HOM05D005407 ORTHO05D006544 2.4e-72 276.6 269 69.9
BolC7t42952H Brassica oleracea HOM05D005407 ORTHO05D006544 9.9e-71 271.2 274 77.4
A07p16540 Brassica napus HOM05D005407 ORTHO05D006544 4.9e-70 268.9 309 80.6
BraA07t29378Z Brassica rapa HOM05D005407 ORTHO05D006544 4.9e-70 268.9 309 80.3
Thhalv10005384m.g Eutrema salsugineum HOM05D005407 ORTHO05D006544 2.7e-68 263.1 280 73.9
BraA09t36591Z Brassica rapa HOM05D005407 ORTHO05D006544 4.6e-68 262.3 270 67.8
Sp2g29310 Schrenkiella parvula HOM05D005407 ORTHO05D006544 2.5e-66 256.5 299 71.2
BcaB04g20064 Brassica carinata HOM05D005407 ORTHO05D006544 8.1e-65 251.5 269 68.8
Aa31LG1G15900 Aethionema arabicum HOM05D005407 ORTHO05D006544 2.5e-45 186.8 250 54.8
THA.LOC104827519 Tarenaya hassleriana HOM05D005407 ORTHO05D006544 1.3e-41 174.5 320 44.1
Dinv26896 Davidia involucrata HOM05D005407 ORTHO05D006544 1.7e-22 110.9 298 32.2
Gohir.D03G026900 Gossypium hirsutum HOM05D005407 ORTHO05D006544 2.5e-21 107.1 190 43.2
Cpa.g.sc6.55 Carica papaya HOM05D005407 ORTHO05D006544 3.2e-21 106.7 197 38.6
Gohir.A02G153500 Gossypium hirsutum HOM05D005407 ORTHO05D006544 7.2e-21 105.5 190 42.1
Gorai.003G028600 Gossypium raimondii HOM05D005407 ORTHO05D006544 9.4e-21 105.1 190 42.6
Gohir.D11G205800 Gossypium hirsutum HOM05D005407 ORTHO05D006544 3.6e-20 103.2 200 40.5
Gorai.008G080000 Gossypium raimondii HOM05D005407 ORTHO05D006544 4.7e-20 102.8 325 30.8
Gohir.A11G217700 Gossypium hirsutum HOM05D005407 ORTHO05D006544 1.0e-19 101.7 202 38.1
Gorai.007G220900 Gossypium raimondii HOM05D005407 ORTHO05D006544 2.3e-19 100.5 200 40.0
Gohir.A12G074500 Gossypium hirsutum HOM05D005407 ORTHO05D006544 3.9e-19 99.8 325 30.8
Gohir.D12G072700 Gossypium hirsutum HOM05D005407 ORTHO05D006544 3.9e-19 99.8 325 30.5
Duzib187G0216 Durio zibethinus HOM05D005407 ORTHO05D006544 5.1e-19 99.4 229 36.2
Lsat_1_v5_gn_4_162000 Lactuca sativa HOM05D005407 ORTHO05D006544 1.1e-18 98.2 174 39.7
Potri.007G051800 Populus trichocarpa HOM05D005407 ORTHO05D006544 5.7e-18 95.9 199 37.2
Duzib264G0474 Durio zibethinus HOM05D005407 ORTHO05D006544 1.3e-17 94.7 218 37.2
CANSAT01G3084 Cannabis sativa HOM05D005407 ORTHO05D006544 1.7e-17 94.4 183 41.5
TAR628G1677 Trochodendron aralioides HOM05D005407 ORTHO05D006544 3.1e-16 90.1 197 37.1
Nitab4.5_0007941g0010 Nicotiana tabacum HOM05D005407 ORTHO05D006544 4.1e-16 89.7 187 34.2
Potri.005G145100 Populus trichocarpa HOM05D005407 ORTHO05D006544 5.3e-16 89.4 202 33.7
GSVIVG01000158001 Vitis vinifera HOM05D005407 ORTHO05D006544 7.0e-16 89.0 175 38.3
CsaV3_6G043820 Cucumis sativus L. HOM05D005407 ORTHO05D006544 9.1e-16 88.6 321 28.0
HanXRQChr12g0373231 Helianthus annuus HOM05D005407 ORTHO05D006544 9.1e-16 88.6 165 40.6
MELO3C007607.2 Cucumis melo HOM05D005407 ORTHO05D006544 1.6e-15 87.8 317 28.4
Ciclev10025829m.g Citrus clementina HOM05D005407 ORTHO05D006544 2.6e-15 87.0 216 36.6
Nitab4.5_0003878g0070 Nicotiana tabacum HOM05D005407 ORTHO05D006544 2.6e-15 87.0 188 35.1
RcHm_v2.0_Chr2g0107301 Rosa chinensis HOM05D005407 ORTHO05D006544 2.6e-15 87.0 217 35.9
Prupe.6G224800 Prunus persica HOM05D005407 ORTHO05D006544 3.5e-15 86.7 207 36.7
Actinidia21238 Actinidia chinensis HOM05D005407 ORTHO05D006544 5.9e-15 85.9 283 29.3
Sopen02g037270 Solanum pennellii HOM05D005407 ORTHO05D006544 5.9e-15 85.9 187 36.4
Duzib147G1232 Durio zibethinus HOM05D005407 ORTHO05D006544 7.7e-15 85.5 213 35.2
Solyc02g092720.1 Solanum lycopersicum HOM05D005407 ORTHO05D006544 1.0e-14 85.1 282 30.9
CAN.G1075.9 Capsicum annuum HOM05D005407 ORTHO05D006544 1.7e-14 84.3 181 34.8
Nn1g04631 Nelumbo nucifera HOM05D005407 ORTHO05D006544 2.2e-14 84.0 186 35.5
Lsat_1_v5_gn_3_87740 Lactuca sativa HOM05D005407 ORTHO05D006544 3.8e-14 83.2 179 35.2
Manes.13G114000 Manihot esculenta HOM05D005407 ORTHO05D006544 3.8e-14 83.2 197 33.5
MD15G1292600 Malus domestica HOM05D005407 ORTHO05D006544 5.0e-14 82.8 192 37.5
Nn5g30501 Nelumbo nucifera HOM05D005407 ORTHO05D006544 5.0e-14 82.8 193 34.7
Sabra07G0045500 Salix brachista HOM05D005407 ORTHO05D006544 5.0e-14 82.8 202 35.1
Cfa004094 Carpinus fangiana HOM05D005407 ORTHO05D006544 6.5e-14 82.4 202 35.6
CiPaw.01G007800 Carya illinoinensis HOM05D005407 ORTHO05D006544 1.1e-13 81.6 206 35.0
PSO541G0358 Papaver somniferum HOM05D005407 ORTHO05D006544 1.5e-13 81.3 202 34.7
FvH4_1g17130 Fragaria vesca HOM05D005407 ORTHO05D006544 1.9e-13 80.9 217 35.5
FAN19G1545 Fragaria x ananassa HOM05D005407 ORTHO05D006544 1.9e-13 80.9 217 35.5
FAN26G3453 Fragaria x ananassa HOM05D005407 ORTHO05D006544 1.9e-13 80.9 217 35.5
MD02G1181700 Malus domestica HOM05D005407 ORTHO05D006544 1.9e-13 80.9 187 35.8
Eucgr.I00726 Eucalyptus grandis HOM05D005407 ORTHO05D006544 2.5e-13 80.5 213 33.8
ClCG01G017290 Citrullus lanatus HOM05D005407 ORTHO05D006544 3.2e-13 80.1 197 32.5
Sabra05G0114800 Salix brachista HOM05D005407 ORTHO05D006544 3.2e-13 80.1 198 33.3
Sabra05G0115900 Salix brachista HOM05D005407 ORTHO05D006544 3.2e-13 80.1 198 33.3
Thecc.01G067900 Theobroma cacao HOM05D005407 ORTHO05D006544 3.2e-13 80.1 220 34.5
Actinidia32821 Actinidia chinensis HOM05D005407 ORTHO05D006544 4.2e-13 79.7 203 33.5
SalBow1G5175 Salvia bowleyana HOM05D005407 ORTHO05D006544 4.2e-13 79.7 192 34.9
FAN23G2725 Fragaria x ananassa HOM05D005407 ORTHO05D006544 5.5e-13 79.3 214 34.6
PGSC0003DMG400024943 Solanum tuberosum HOM05D005407 ORTHO05D006544 7.2e-13 79.0 180 34.4
Atru.chr3.207 Acer truncatum HOM05D005407 ORTHO05D006544 9.4e-13 78.6 179 36.3
TPR.G23890 Trifolium pratense HOM05D005407 ORTHO05D006544 9.4e-13 78.6 194 32.0
Aqoxy6G02765 Aquilegia oxysepala HOM05D005407 ORTHO05D006544 1.2e-12 78.2 191 34.0
Glyma.17G164300 Glycine max HOM05D005407 ORTHO05D006544 1.2e-12 78.2 200 33.0
PSO675G4008 Papaver somniferum HOM05D005407 ORTHO05D006544 1.6e-12 77.8 207 34.3
Haze_15320 Corylus avellana HOM05D005407 ORTHO05D006544 2.7e-12 77.0 200 34.0
PGR004G2820 Punica granatum HOM05D005407 ORTHO05D006544 2.7e-12 77.0 212 32.5
Cc07_g06740 Coffea canephora HOM05D005407 ORTHO05D006544 6.1e-12 75.9 174 35.1
Sed0008783 Sechium edule HOM05D005407 ORTHO05D006544 6.1e-12 75.9 296 27.0
CiPaw.02G004700 Carya illinoinensis HOM05D005407 ORTHO05D006544 1.4e-11 74.7 206 33.5
FAN28G2899 Fragaria x ananassa HOM05D005407 ORTHO05D006544 2.3e-11 73.9 213 32.4
QL06p039956 Quercus lobata HOM05D005407 ORTHO05D006544 2.3e-11 73.9 203 36.9
Lj4g0004383 Lotus japonicus HOM05D005407 ORTHO05D006544 4.0e-11 73.2 196 33.2
Oeu040602.1 Olea europaea HOM05D005407 ORTHO05D006544 4.0e-11 73.2 189 32.3
Gorai.011G107400 Gossypium raimondii HOM05D005407 ORTHO05D006544 6.7e-11 72.4 171 32.7
MSTRG.2839 Avicennia marina HOM05D005407 ORTHO05D006544 2.0e-10 70.9 186 35.5
Glyma.05G103000 Glycine max HOM05D005407 ORTHO05D006544 2.6e-10 70.5 200 32.0
Dinv30062 Davidia involucrata HOM05D005407 ORTHO05D006544 4.4e-10 69.7 203 31.0
Gohir.D10G097800 Gossypium hirsutum HOM05D005407 ORTHO05D006544 4.4e-10 69.7 173 32.9
Manes.12G112400 Manihot esculenta HOM05D005407 ORTHO05D006544 5.7e-10 69.3 193 31.1
MSTRG.23698 Avicennia marina HOM05D005407 ORTHO05D006544 7.5e-10 68.9 190 33.7
EL10Ac6g15663 Beta vulgaris HOM05D005407 ORTHO05D006544 9.7e-10 68.6 210 32.4
CDE04G2817 Ceratophyllum demersum HOM05D005407 ORTHO05D006544 9.7e-10 68.6 188 34.0
HanXRQChr12g0377191 Helianthus annuus HOM05D005407 ORTHO05D006544 1.7e-09 67.8 95 44.2
unitig_52.g17607 Utricularia gibba HOM05D005407 ORTHO05D006544 1.7e-09 67.8 173 34.7
Glyma.11G050800 Glycine max HOM05D005407 ORTHO05D006544 3.7e-09 66.6 187 29.9
VMungo1011G0001 Vigna mungo HOM05D005407 ORTHO05D006544 6.3e-09 65.9 199 30.7
Gohir.A10G090300 Gossypium hirsutum HOM05D005407 ORTHO05D006544 8.2e-09 65.5 171 32.2
MSTRG.3457 Avicennia marina HOM05D005407 ORTHO05D006544 1.4e-08 64.7 186 31.7
arahy.Tifrunner.gnm1.ann1.IRX7P6 Arachis hypogaea HOM05D005407 ORTHO05D006544 3.1e-08 63.5 197 29.9
arahy.Tifrunner.gnm1.ann1.UV71K9 Arachis hypogaea HOM05D005407 ORTHO05D006544 3.1e-08 63.5 198 29.3
CDE07G1425 Ceratophyllum demersum HOM05D006600 ORTHO05D008446 3.1e-08 63.5 184 33.2
SGA_v2.0_scaffold15G07407 Striga asiatica HOM05D005407 ORTHO05D006544 3.1e-08 63.5 187 32.6
Peaxi162Scf00365g00076 Petunia axillaris HOM05D005407 ORTHO05D006544 4.1e-08 63.2 162 34.0
Psat4g083080 Pisum sativum HOM05D005407 ORTHO05D006544 5.3e-08 62.8 190 30.5
CSS0012811 Camellia sinensis var. sinensis HOM05D005407 ORTHO05D006544 7.0e-08 62.4 181 30.4
TWI53G1118 Tripterygium wilfordii HOM05D005407 ORTHO05D006544 1.2e-07 61.6 192 30.2
HPP92_007853 Vanilla planifolia HOM05D005407 ORTHO05D006544 1.2e-07 61.6 179 30.2
unitig_62.g23420 Utricularia gibba HOM05D005407 ORTHO05D006544 1.6e-07 61.2 165 31.5
HanXRQChr11g0322471 Helianthus annuus HOM05D005407 ORTHO05D006544 2.7e-07 60.5 159 30.8
Rhsim08G0096100 Rhododendron simsii HOM05D005407 ORTHO05D006544 2.7e-07 60.5 152 35.5
TWI09G0600 Tripterygium wilfordii HOM05D005407 ORTHO05D006544 3.5e-07 60.1 194 30.4
VMungo1215G1030 Vigna mungo HOM05D005407 ORTHO05D006544 4.5e-07 59.7 189 29.6
Phvul.002G013600 Phaseolus vulgaris HOM05D005407 ORTHO05D006544 7.7e-07 58.9 192 30.2
vmacro17985 Vaccinium macrocarpon HOM05D005407 ORTHO05D006544 7.7e-07 58.9 99 38.4
Migut.H00374 Erythranthe guttata HOM05D005407 ORTHO05D006544 1.7e-06 57.8 197 31.0
Phvul.003G237500 Phaseolus vulgaris HOM05D005407 ORTHO05D006544 6.5e-06 55.8 78 44.9
Medtr4g095320 Medicago truncatula HOM05D005407 ORTHO05D006544 8.5e-06 55.5 196 27.6


User provided reference genes

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