Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G67600 Arabidopsis thaliana HOM05D006534 ORTHO05D006434 1.5e-21 105.9 83 100.0
Carub.0008s2687 Capsella rubella HOM05D006534 ORTHO05D006434 1.5e-21 105.9 83 100.0
BcaNung05866 Brassica carinata HOM05D006534 ORTHO05D006434 4.8e-20 100.9 83 97.6
AL8G43700 Arabidopsis lyrata HOM05D006534 ORTHO05D006434 1.8e-19 99.0 83 92.8
BraA06t26214Z Brassica rapa HOM05D006534 ORTHO05D006434 4.5e-18 94.4 83 96.4
CARHR279990 Cardamine hirsuta HOM05D006534 ORTHO05D006434 1.9e-16 89.0 85 85.9
Sp2g29050 Schrenkiella parvula HOM05D006534 ORTHO05D006434 5.5e-16 87.4 84 85.7
C03p59650 Brassica napus HOM05D006534 ORTHO05D006434 4.7e-15 84.3 83 86.7
BolC3t18227H Brassica oleracea HOM05D006534 ORTHO05D006434 4.7e-15 84.3 83 86.7
A02p44130 Brassica napus HOM05D006534 ORTHO05D006434 6.8e-14 80.5 84 86.9
C02p64390 Brassica napus HOM05D006534 ORTHO05D006434 6.8e-14 80.5 84 86.9
BolC2t12503H Brassica oleracea HOM05D006534 ORTHO05D006434 6.8e-14 80.5 84 86.9
BraA02t09336Z Brassica rapa HOM05D006534 ORTHO05D006434 6.8e-14 80.5 84 86.9
BcaC03g18364 Brassica carinata HOM05D006534 ORTHO05D006434 2.6e-13 78.6 85 76.5
Aa31LG1G16150 Aethionema arabicum HOM05D006534 ORTHO05D006434 4.4e-13 77.8 83 74.7
THA.LOC104821207 Tarenaya hassleriana HOM05D006534 ORTHO05D006434 1.4e-11 72.8 83 79.5
BcaNung05864 Brassica carinata HOM05D001027 ORTHO05D000844 2.9e-09 65.1 31 96.8
Ciclev10026875m.g Citrus clementina HOM05D006534 ORTHO05D006434 3.8e-09 64.7 82 64.6
Cfa004139 Carpinus fangiana HOM05D006534 ORTHO05D006434 1.5e-08 62.8 82 57.3
Glyma.17G160200 Glycine max HOM05D006534 ORTHO05D006434 1.5e-08 62.8 81 58.0
arahy.Tifrunner.gnm1.ann1.VT3BTZ Arachis hypogaea HOM05D006534 ORTHO05D006434 4.2e-08 61.2 83 74.7
Psat4g081440 Pisum sativum HOM05D006534 ORTHO05D006434 5.5e-08 60.8 81 63.0
Sc08g0004430 Simmondsia chinensis HOM05D006534 ORTHO05D006434 7.2e-08 60.5 88 64.8
HPP92_006071 Vanilla planifolia HOM05D006534 ORTHO05D006434 1.2e-07 59.7 84 69.0
GSVIVG01002630001 Vitis vinifera HOM05D006534 ORTHO05D006434 1.6e-07 59.3 82 65.9
Ca_22100_v3 Cicer arietinum L. HOM05D006534 ORTHO05D006434 2.7e-07 58.5 81 64.2
Aqoxy5G01709 Aquilegia oxysepala HOM05D006534 ORTHO05D006434 4.7e-07 57.8 92 69.6
CDE04G3098 Ceratophyllum demersum HOM05D006534 ORTHO05D006434 6.1e-07 57.4 83 73.5
Dinv42239 Davidia involucrata HOM05D006534 ORTHO05D006434 6.1e-07 57.4 88 59.1
Lalb_Chr16g0389271 Lupinus albus HOM05D006534 ORTHO05D006434 6.1e-07 57.4 81 59.3
TPR.G21131 Trifolium pratense HOM05D006534 ORTHO05D006434 8.0e-07 57.0 96 57.3
Duzib052G0836 Durio zibethinus HOM05D006534 ORTHO05D006434 1.4e-06 56.2 82 56.1
Ciclev10029655m.g Citrus clementina HOM05D006534 ORTHO05D006434 1.8e-06 55.8 97 58.8
HanXRQChr16g0509341 Helianthus annuus HOM05D006534 ORTHO05D006434 1.8e-06 55.8 88 75.0
Lalb_Chr06g0165061 Lupinus albus HOM05D006534 ORTHO05D006434 1.8e-06 55.8 86 59.3
BcaC09g49978 Brassica carinata HOM05D012517 ORTHO05D014406 4.0e-06 54.7 111 51.4
BolC1t02988H Brassica oleracea HOM05D012517 ORTHO05D014406 4.0e-06 54.7 111 51.4
Manes.13G110700 Manihot esculenta HOM05D006534 ORTHO05D006434 5.2e-06 54.3 82 72.0
SMO163G0020 Selaginella moellendorffii HOM05D006534 ORTHO05D006434 5.2e-06 54.3 30 76.7
Phvul.007G046300 Phaseolus vulgaris HOM05D006534 ORTHO05D006434 6.8e-06 53.9 92 70.7
Potri.009G086900 Populus trichocarpa HOM05D006534 ORTHO05D006434 6.8e-06 53.9 94 59.6
Thecc.02G118300 Theobroma cacao HOM05D006534 ORTHO05D006434 6.8e-06 53.9 87 71.3


User provided reference genes

Program Settings