Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s2677 Capsella rubella HOM05D008250 ORTHO05D010361 3.4e-26 120.9 63 100.0
AL8G43594 Arabidopsis lyrata HOM05D008250 ORTHO05D010361 6.0e-23 110.2 60 91.7
AT5G65880 Arabidopsis thaliana HOM05D008250 ORTHO05D010361 1.5e-21 105.5 62 90.3
BcaC01g02825 Brassica carinata HOM05D008250 ORTHO05D010361 6.3e-20 100.1 57 91.2
BraA06t26203Z Brassica rapa HOM05D008250 ORTHO05D010361 6.3e-20 100.1 57 91.2
BcaB02g09904 Brassica carinata HOM05D008250 ORTHO05D010361 8.2e-20 99.8 57 89.5
C03p59760 Brassica napus HOM05D008250 ORTHO05D010361 1.8e-19 98.6 57 89.5
C03p59770 Brassica napus HOM05D008250 ORTHO05D010361 1.8e-19 98.6 57 89.5
BolC3t18239H Brassica oleracea HOM05D008250 ORTHO05D010361 1.8e-19 98.6 57 89.5
BolC3t18240H Brassica oleracea HOM05D008250 ORTHO05D010361 1.8e-19 98.6 57 89.5
Thhalv10005252m.g Eutrema salsugineum HOM05D008250 ORTHO05D010361 2.6e-18 94.7 57 82.5
CARHR279880 Cardamine hirsuta HOM05D008250 ORTHO05D010361 8.5e-17 89.7 62 79.0
CiPaw.01G002500 Carya illinoinensis HOM05D008250 ORTHO05D010361 4.2e-16 87.4 56 78.6
Thecc.01G075500 Theobroma cacao HOM05D008250 ORTHO05D010361 3.0e-14 81.3 51 72.5
Hma1.2p1_1760F.1_g301220 Hydrangea macrophylla HOM05D008250 ORTHO05D010361 3.9e-14 80.9 50 80.0
COL.COLO4_11607 Corchorus olitorius HOM05D008250 ORTHO05D010361 8.7e-14 79.7 50 74.0
Lsat_1_v5_gn_4_159680 Lactuca sativa HOM05D008250 ORTHO05D010361 1.9e-13 78.6 61 65.6
ClCG02G012200 Citrullus lanatus HOM05D008250 ORTHO05D010361 2.5e-13 78.2 56 69.6
Gohir.A12G078200 Gossypium hirsutum HOM05D008250 ORTHO05D010361 2.5e-13 78.2 50 74.0
HanXRQChr09g0255361 Helianthus annuus HOM05D008250 ORTHO05D010361 2.5e-13 78.2 61 63.9
Gohir.D12G076400 Gossypium hirsutum HOM05D008250 ORTHO05D010361 3.3e-13 77.8 50 72.0
Gorai.008G085000 Gossypium raimondii HOM05D008250 ORTHO05D010361 3.3e-13 77.8 50 72.0
TWI74G1530 Tripterygium wilfordii HOM05D008250 ORTHO05D010361 5.7e-13 77.0 50 78.0
Sc03g0002500 Simmondsia chinensis HOM05D008250 ORTHO05D010361 7.4e-13 76.6 61 63.9
GSVIVG01002948001 Vitis vinifera HOM05D008250 ORTHO05D010361 9.7e-13 76.3 60 65.0
GSVIVG01004436001 Vitis vinifera HOM05D008250 ORTHO05D010361 9.7e-13 76.3 60 65.0
Manes.12G117000 Manihot esculenta HOM05D008250 ORTHO05D010361 1.3e-12 75.9 56 67.9
Potri.007G006700 Populus trichocarpa HOM05D008250 ORTHO05D010361 1.3e-12 75.9 61 62.3
Actinidia16414 Actinidia chinensis HOM05D008250 ORTHO05D010361 2.2e-12 75.1 61 60.7
Ciclev10026916m.g Citrus clementina HOM05D008250 ORTHO05D010361 2.2e-12 75.1 61 62.3
Migut.H00327 Erythranthe guttata HOM05D008250 ORTHO05D010361 2.2e-12 75.1 62 64.5
Aqoxy6G02462 Aquilegia oxysepala HOM05D008250 ORTHO05D010361 3.7e-12 74.3 50 78.0
Nn6g34516 Nelumbo nucifera HOM05D008250 ORTHO05D010361 4.8e-12 73.9 60 65.0
Phvul.003G233500 Phaseolus vulgaris HOM05D008250 ORTHO05D010361 6.3e-12 73.6 59 62.7
Atru.chr3.1053 Acer truncatum HOM05D008250 ORTHO05D010361 1.4e-11 72.4 61 60.7
Prupe.6G217600 Prunus persica HOM05D008250 ORTHO05D010361 2.4e-11 71.6 38 84.2
MD02G1189100 Malus domestica HOM05D008250 ORTHO05D010361 3.1e-11 71.2 56 69.6
Glyma.05G107700 Glycine max HOM05D008250 ORTHO05D010361 4.1e-11 70.9 38 81.6
Glyma.17G159100 Glycine max HOM05D008250 ORTHO05D010361 5.3e-11 70.5 37 83.8
Sed0009961 Sechium edule HOM05D008250 ORTHO05D010361 6.9e-11 70.1 56 60.7
RcHm_v2.0_Chr2g0108561 Rosa chinensis HOM05D008250 ORTHO05D010361 2.0e-10 68.6 54 57.4
Solyc02g092130.2 Solanum lycopersicum HOM05D008250 ORTHO05D010361 2.0e-10 68.6 50 72.0
PGSC0003DMG400021408 Solanum tuberosum HOM05D008250 ORTHO05D010361 2.0e-10 68.6 50 72.0
Medtr4g097410 Medicago truncatula HOM05D008250 ORTHO05D010361 2.6e-10 68.2 60 55.0
Lj4g0012638 Lotus japonicus HOM05D008250 ORTHO05D010361 4.5e-10 67.4 37 78.4
Lalb_Chr05g0230301 Lupinus albus HOM05D008250 ORTHO05D010361 5.9e-10 67.0 61 57.4
Potri.014G006850 Populus trichocarpa HOM05D008250 ORTHO05D010361 5.9e-10 67.0 43 74.4
SEGI_25339 Sequoiadendron giganteum HOM05D008250 ORTHO05D010361 5.9e-10 67.0 56 55.4
arahy.Tifrunner.gnm1.ann1.IKZ63P Arachis hypogaea HOM05D008250 ORTHO05D010361 7.7e-10 66.6 34 85.3
arahy.Tifrunner.gnm1.ann1.L5XXFX Arachis hypogaea HOM05D008250 ORTHO05D010361 7.7e-10 66.6 34 85.3
A06p32730 Brassica napus HOM05D008250 ORTHO05D010361 7.7e-10 66.6 39 87.2
Psat4g080920 Pisum sativum HOM05D008250 ORTHO05D010361 1.7e-09 65.5 36 75.0
TPR.G3717 Trifolium pratense HOM05D008250 ORTHO05D010361 1.7e-09 65.5 37 73.0
CsaV3_2G016360 Cucumis sativus L. HOM05D008250 ORTHO05D010361 1.1e-08 62.8 39 79.5
Aa31LG1G16230 Aethionema arabicum HOM05D008250 ORTHO05D010361 1.4e-08 62.4 41 78.0
CDE02G1785 Ceratophyllum demersum HOM05D008250 ORTHO05D010361 1.9e-08 62.0 43 65.1
Os03g0675700 Oryza sativa ssp. japonica HOM05D008250 ORTHO05D010361 3.6e-07 57.8 43 60.5
AagrBONN_evm.TU.Sc2ySwM_362.1884 Anthoceros agrestis HOM05D063975 ORTHO05D010361 1.4e-06 55.8 52 53.8


User provided reference genes

Program Settings