Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s2674 Capsella rubella HOM05D006600 ORTHO05D008446 5.0e-161 571.2 326 100.0
AT5G65860 Arabidopsis thaliana HOM05D006600 ORTHO05D008446 2.7e-151 538.9 327 88.7
CARHR279850 Cardamine hirsuta HOM05D006600 ORTHO05D008446 7.4e-149 530.8 333 91.9
Thhalv10005718m.g Eutrema salsugineum HOM05D006600 ORTHO05D008446 6.9e-147 524.2 327 82.6
Sp2g28940 Schrenkiella parvula HOM05D006600 ORTHO05D008446 1.1e-144 516.9 327 90.8
BolC3t18247H Brassica oleracea HOM05D006600 ORTHO05D008446 5.5e-144 514.6 327 76.8
BraA06t26199Z Brassica rapa HOM05D006600 ORTHO05D008446 3.6e-143 511.9 327 76.1
BcaB02g09901 Brassica carinata HOM05D006600 ORTHO05D008446 6.1e-143 511.1 327 75.8
C03p59830 Brassica napus HOM05D006600 ORTHO05D008446 6.1e-143 511.1 327 76.1
A06p32700 Brassica napus HOM05D006600 ORTHO05D008446 1.8e-142 509.6 327 75.8
THA.LOC104807092 Tarenaya hassleriana HOM05D006600 ORTHO05D008446 5.0e-129 464.9 323 68.1
BcaC01g02830 Brassica carinata HOM05D006600 ORTHO05D008446 9.4e-128 460.7 238 90.3
TPR.G33718 Trifolium pratense HOM05D006600 ORTHO05D008446 1.4e-126 456.8 323 67.5
Psat5g038240 Pisum sativum HOM05D006600 ORTHO05D008446 2.6e-125 452.6 323 65.6
VMungo1309G2568 Vigna mungo HOM05D006600 ORTHO05D008446 7.5e-125 451.1 321 80.4
arahy.Tifrunner.gnm1.ann1.H62KW4 Arachis hypogaea HOM05D006600 ORTHO05D008446 1.7e-124 449.9 322 80.1
arahy.Tifrunner.gnm1.ann1.UTGV4K Arachis hypogaea HOM05D006600 ORTHO05D008446 1.7e-124 449.9 322 79.8
Glyma.04G044500 Glycine max HOM05D006600 ORTHO05D008446 2.2e-124 449.5 321 66.7
Medtr3g102800 Medicago truncatula HOM05D006600 ORTHO05D008446 2.2e-124 449.5 323 65.3
CsaV3_2G026260 Cucumis sativus L. HOM05D006600 ORTHO05D008446 2.8e-124 449.1 322 79.5
Glyma.06G045000 Glycine max HOM05D006600 ORTHO05D008446 3.7e-124 448.7 321 80.1
Aa31LG1G16240 Aethionema arabicum HOM05D006600 ORTHO05D008446 4.8e-124 448.4 311 84.2
Ciclev10001599m.g Citrus clementina HOM05D006600 ORTHO05D008446 1.1e-123 447.2 322 80.1
Phvul.009G070400 Phaseolus vulgaris HOM05D006600 ORTHO05D008446 1.1e-123 447.2 320 80.0
Lalb_Chr23g0267431 Lupinus albus HOM05D006600 ORTHO05D008446 1.4e-123 446.8 325 79.1
Lj1g0008642 Lotus japonicus HOM05D006600 ORTHO05D008446 1.8e-123 446.4 323 79.9
Sabra14G0012400 Salix brachista HOM05D006600 ORTHO05D008446 3.1e-123 445.7 322 65.5
Ca_15912_v3 Cicer arietinum L. HOM05D006600 ORTHO05D008446 9.1e-123 444.1 323 76.2
Solyc04g078120.3 Solanum lycopersicum HOM05D006600 ORTHO05D008446 9.1e-123 444.1 322 69.3
QL12p037547 Quercus lobata HOM05D006600 ORTHO05D008446 1.2e-122 443.7 322 64.3
Ah.15g092540 Amaranthus hybridus HOM05D006600 ORTHO05D008446 1.6e-122 443.4 324 63.9
PSO541G2868 Papaver somniferum HOM05D006600 ORTHO05D008446 1.6e-122 443.4 325 72.3
PSO675G8764 Papaver somniferum HOM05D006600 ORTHO05D008446 1.6e-122 443.4 325 65.2
ClCG08G016350 Citrullus lanatus HOM05D006600 ORTHO05D008446 3.5e-122 442.2 322 78.6
PGSC0003DMG400021533 Solanum tuberosum HOM05D006600 ORTHO05D008446 3.5e-122 442.2 322 77.0
Sopen04g031730 Solanum pennellii HOM05D006600 ORTHO05D008446 4.5e-122 441.8 322 67.4
Thecc.08G092000 Theobroma cacao HOM05D006600 ORTHO05D008446 4.5e-122 441.8 320 70.3
CDE04G0491 Ceratophyllum demersum HOM05D006600 ORTHO05D008446 1.3e-121 440.3 325 64.3
Sed0004073 Sechium edule HOM05D006600 ORTHO05D008446 1.3e-121 440.3 322 79.2
Manes.18G044200 Manihot esculenta HOM05D006600 ORTHO05D008446 1.7e-121 439.9 322 64.3
Oeu050861.1 Olea europaea HOM05D006600 ORTHO05D008446 1.7e-121 439.9 318 67.6
Prupe.1G425800 Prunus persica HOM05D006600 ORTHO05D008446 1.7e-121 439.9 325 77.2
Atru.chr13.803 Acer truncatum HOM05D006600 ORTHO05D008446 2.3e-121 439.5 321 79.1
Gorai.009G217900 Gossypium raimondii HOM05D006600 ORTHO05D008446 2.3e-121 439.5 320 79.4
CiPaw.08G048500 Carya illinoinensis HOM05D006600 ORTHO05D008446 3.8e-121 438.7 319 65.8
Rhsim07G0222000 Rhododendron simsii HOM05D006600 ORTHO05D008446 5.0e-121 438.3 322 77.0
Lsat_1_v5_gn_6_112481 Lactuca sativa HOM05D006600 ORTHO05D008446 8.6e-121 437.6 321 80.1
Nitab4.5_0000934g0020 Nicotiana tabacum HOM05D006600 ORTHO05D008446 8.6e-121 437.6 322 64.6
AUR62038783 Chenopodium quinoa HOM05D006600 ORTHO05D008446 1.1e-120 437.2 324 62.3
Cc10_g05550 Coffea canephora HOM05D006600 ORTHO05D008446 1.1e-120 437.2 322 78.3
Dinv44978 Davidia involucrata HOM05D006600 ORTHO05D008446 1.5e-120 436.8 322 78.6
Eucgr.F00122 Eucalyptus grandis HOM05D006600 ORTHO05D008446 1.9e-120 436.4 322 78.6
PGR083G0558 Punica granatum HOM05D006600 ORTHO05D008446 1.9e-120 436.4 322 78.9
TWI56G0382 Tripterygium wilfordii HOM05D006600 ORTHO05D008446 1.9e-120 436.4 320 77.8
vmacro04585 Vaccinium macrocarpon HOM05D006600 ORTHO05D008446 2.5e-120 436.0 322 78.9
Cfa013668 Carpinus fangiana HOM05D006600 ORTHO05D008446 3.2e-120 435.6 322 77.6
AUR62037454 Chenopodium quinoa HOM05D006600 ORTHO05D008446 3.2e-120 435.6 324 62.7
Gohir.A05G207900 Gossypium hirsutum HOM05D006600 ORTHO05D008446 3.2e-120 435.6 320 78.8
MD08G1088100 Malus domestica HOM05D006600 ORTHO05D008446 4.2e-120 435.3 325 77.5
Migut.C00501 Erythranthe guttata HOM05D006600 ORTHO05D008446 9.5e-120 434.1 320 77.8
Nitab4.5_0003228g0070 Nicotiana tabacum HOM05D006600 ORTHO05D008446 1.6e-119 433.3 322 64.0
CSS0036700 Camellia sinensis var. sinensis HOM05D006600 ORTHO05D008446 2.1e-119 433.0 322 76.7
Gohir.D05G211400 Gossypium hirsutum HOM05D006600 ORTHO05D008446 2.1e-119 433.0 320 78.4
unitig_62.g23648 Utricularia gibba HOM05D006600 ORTHO05D008446 3.6e-119 432.2 319 63.6
HanXRQChr10g0304021 Helianthus annuus HOM05D006600 ORTHO05D008446 4.7e-119 431.8 322 65.2
FAN20G2273 Fragaria x ananassa HOM05D006600 ORTHO05D008446 6.1e-119 431.4 321 71.7
DCAR_020080 Daucus carota HOM05D006600 ORTHO05D008446 8.0e-119 431.0 322 76.4
Peaxi162Scf00081g00125 Petunia axillaris HOM05D006600 ORTHO05D008446 8.0e-119 431.0 322 76.7
Actinidia38095 Actinidia chinensis HOM05D006600 ORTHO05D008446 1.8e-118 429.9 322 77.3
MSTRG.1040 Avicennia marina HOM05D006600 ORTHO05D008446 2.3e-118 429.5 327 74.9
MELO3C010818.2 Cucumis melo HOM05D006600 ORTHO05D008446 2.3e-118 429.5 322 77.3
SalBow7G4697 Salvia bowleyana HOM05D006600 ORTHO05D008446 2.3e-118 429.5 323 76.8
Aqoxy6G02751 Aquilegia oxysepala HOM05D006600 ORTHO05D008446 3.0e-118 429.1 327 76.8
FvH4_2g33350 Fragaria vesca HOM05D006600 ORTHO05D008446 6.8e-118 427.9 321 76.9
FAN15G1504 Fragaria x ananassa HOM05D006600 ORTHO05D008446 6.8e-118 427.9 321 77.3
FAN24G1058 Fragaria x ananassa HOM05D006600 ORTHO05D008446 1.5e-117 426.8 321 76.9
CANSAT35G1599 Cannabis sativa HOM05D006600 ORTHO05D008446 3.4e-117 425.6 322 76.7
MBI16_g13383_MAGBIO Magnolia biondii HOM05D006600 ORTHO05D008446 1.7e-116 423.3 319 63.6
TAR625G0631 Trochodendron aralioides HOM05D006600 ORTHO05D008446 2.8e-116 422.5 322 75.5
Hma1.2p1_0923F.1_g236990 Hydrangea macrophylla HOM05D006600 ORTHO05D008446 4.9e-116 421.8 323 76.5
RcHm_v2.0_Chr6g0309231 Rosa chinensis HOM05D006600 ORTHO05D008446 4.9e-116 421.8 321 76.0
SGA_v2.0_scaffold244G44349 Striga asiatica HOM05D006600 ORTHO05D008446 4.9e-116 421.8 317 62.5
Haze_22302 Corylus avellana HOM05D006600 ORTHO05D008446 5.9e-114 414.8 322 73.3
EL10As7g23812 Beta vulgaris HOM05D006600 ORTHO05D008446 1.1e-112 410.6 368 64.9
FAN27G3009 Fragaria x ananassa HOM05D006600 ORTHO05D008446 1.5e-112 410.2 321 74.5
Cpa.g.sc21.115 Carica papaya HOM05D006600 ORTHO05D008446 1.6e-111 406.8 233 78.1
GSVIVG01009372001 Vitis vinifera HOM05D006600 ORTHO05D008446 2.8e-111 406.0 231 78.4
Zm00001eb214310 Zea mays HOM05D006600 ORTHO05D008446 4.0e-110 402.1 318 60.4
ATR0030G048 Amborella trichopoda HOM05D006600 ORTHO05D008446 5.2e-110 401.7 330 72.7
CAN.G1054.24 Capsicum annuum HOM05D006600 ORTHO05D008446 5.7e-109 398.3 232 75.9
Lj4A761T87 Lonicera japonica HOM05D006600 ORTHO05D008446 9.8e-109 397.5 231 75.8
Os03g0761200 Oryza sativa ssp. japonica HOM05D006600 ORTHO05D008446 9.8e-109 397.5 317 59.9
SEGI_28402 Sequoiadendron giganteum HOM05D006600 ORTHO05D008446 3.2e-107 392.5 319 73.0
HPP92_018760 Vanilla planifolia HOM05D006600 ORTHO05D008446 8.6e-105 384.4 321 58.3
AL8G43570 Arabidopsis lyrata HOM05D006600 ORTHO05D008446 1.1e-99 367.5 251 91.6
SMO228G0045 Selaginella moellendorffii HOM05D006600 ORTHO05D008446 3.2e-99 365.9 320 55.0
COL.COLO4_28538 Corchorus olitorius HOM05D006600 ORTHO05D008446 3.3e-96 355.9 329 55.3
Nn1g04625 Nelumbo nucifera HOM05D006600 ORTHO05D008446 1.8e-94 350.1 324 67.6
AagrBONN_evm.TU.Sc2ySwM_228.1907 Anthoceros agrestis HOM05D006600 ORTHO05D008446 8.9e-94 347.8 318 66.7
Mapoly0063s0069 Marchantia polymorpha HOM05D006600 ORTHO05D008446 9.9e-93 344.4 320 65.9
Potri.014G019000 Populus trichocarpa HOM05D006600 ORTHO05D008446 3.9e-89 332.4 263 79.1
Duzib093G2027 Durio zibethinus HOM05D006600 ORTHO05D008446 1.1e-86 324.3 262 59.2
ECA246G2737 Erigeron canadensis HOM05D006600 ORTHO05D008446 2.6e-85 319.7 272 75.4
Hma1.2p1_0923F.1_g236980 Hydrangea macrophylla HOM05D006600 ORTHO05D008446 1.9e-83 313.5 282 72.3
BcaC01g02829 Brassica carinata HOM05D006600 ORTHO05D008446 1.7e-81 307.0 228 68.4
COL.COLO4_28541 Corchorus olitorius HOM05D006600 ORTHO05D008446 3.3e-80 302.8 250 60.4
Sc26g0004110 Simmondsia chinensis HOM05D006600 ORTHO05D008446 9.6e-80 301.2 252 76.2
Cre01.g050050 Chlamydomonas reinhardtii HOM05D006600 ORTHO05D008446 2.0e-69 266.9 374 37.7
Pp3c17_19880 Physcomitrium patens HOM05D006600 ORTHO05D008446 1.3e-68 264.2 248 71.4
MCO09G534 Micromonas commoda HOM05D006600 ORTHO05D008446 3.1e-62 243.0 331 45.6
MD15G1072900 Malus domestica HOM05D006600 ORTHO05D008446 1.4e-59 234.2 192 59.4
CBR_g40512 Chara braunii HOM05D000409 ORTHO05D000184 1.6e-58 230.7 190 55.3
TAR624G0301 Trochodendron aralioides HOM05D006600 ORTHO05D008446 8.4e-52 208.4 139 66.9
CDE07G1425 Ceratophyllum demersum HOM05D006600 ORTHO05D008446 2.5e-48 196.8 124 70.2
TAR374G0485 Trochodendron aralioides HOM05D000474 ORTHO05D003648 1.3e-44 184.5 127 63.8
Actinidia08258 Actinidia chinensis HOM05D006600 ORTHO05D008446 1.5e-37 161.0 95 73.7
Oeu040380.1 Olea europaea HOM05D006600 ORTHO05D008446 4.4e-16 89.7 84 57.1
MBI16_g35586_MAGBIO Magnolia biondii HOM05D006600 ORTHO05D001493 3.1e-14 83.6 83 47.0
CBR_g40511 Chara braunii HOM05D000019 ORTHO05D000002 2.0e-08 64.3 151 31.8
Dinv39240 Davidia involucrata HOM05D006600 ORTHO05D008446 1.3e-07 61.6 96 40.6
Actinidia08259 Actinidia chinensis HOM05D006600 ORTHO05D008446 8.3e-07 58.9 43 60.5


User provided reference genes

Program Settings