Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s2673 Capsella rubella HOM05D004917 ORTHO05D005954 5.4e-145 517.7 272 100.0
AL8G43550 Arabidopsis lyrata HOM05D004917 ORTHO05D005954 5.8e-123 444.5 267 85.0
AT5G65840 Arabidopsis thaliana HOM05D004917 ORTHO05D005954 2.7e-120 435.6 277 82.3
Sp2g28930 Schrenkiella parvula HOM05D004917 ORTHO05D005954 2.7e-120 435.6 270 83.3
Thhalv10004770m.g Eutrema salsugineum HOM05D004917 ORTHO05D005954 6.9e-116 421.0 270 81.1
BcaC04g23243 Brassica carinata HOM05D004917 ORTHO05D005954 4.2e-113 411.8 266 79.7
BraA09t36573Z Brassica rapa HOM05D004917 ORTHO05D005954 2.7e-112 409.1 266 79.7
A09p09210 Brassica napus HOM05D004917 ORTHO05D005954 4.6e-112 408.3 266 78.9
BolC9t53970H Brassica oleracea HOM05D004917 ORTHO05D005954 6.1e-112 407.9 266 78.6
BcaB04g20033 Brassica carinata HOM05D004917 ORTHO05D005954 1.8e-111 406.4 267 78.3
BcaB04g20036 Brassica carinata HOM05D004917 ORTHO05D005954 1.8e-111 406.4 267 78.3
CARHR279840 Cardamine hirsuta HOM05D004917 ORTHO05D005954 1.9e-110 402.9 265 77.7
C09p10750 Brassica napus HOM05D004917 ORTHO05D005954 4.3e-110 401.7 263 78.7
Aa31LG1G16240 Aethionema arabicum HOM05D006600 ORTHO05D008446 1.4e-105 386.7 270 73.7
THA.LOC104827747 Tarenaya hassleriana HOM05D004917 ORTHO05D005954 3.6e-96 355.5 265 69.1
FvH4_1g18250 Fragaria vesca HOM05D004917 ORTHO05D005954 2.5e-89 332.8 261 64.8
Duzib147G0189 Durio zibethinus HOM05D004917 ORTHO05D005954 5.5e-89 331.6 204 73.5
Cpa.g.sc673.2 Carica papaya HOM05D004917 ORTHO05D005954 1.6e-88 330.1 229 69.0
Cc07_g07360 Coffea canephora HOM05D004917 ORTHO05D005954 4.7e-88 328.6 203 72.9
RcHm_v2.0_Chr2g0108761 Rosa chinensis HOM05D004917 ORTHO05D005954 4.7e-88 328.6 265 63.4
CANSAT01G2436 Cannabis sativa HOM05D004917 ORTHO05D005954 1.0e-87 327.4 224 68.3
Prupe.6G216800 Prunus persica HOM05D004917 ORTHO05D005954 2.3e-87 326.2 263 63.1
Rhsim08G0090300 Rhododendron simsii HOM05D004917 ORTHO05D005954 2.3e-87 326.2 226 66.8
vmacro18012 Vaccinium macrocarpon HOM05D004917 ORTHO05D005954 2.3e-87 326.2 273 60.1
CAN.G775.1 Capsicum annuum HOM05D004917 ORTHO05D005954 3.0e-87 325.9 227 68.7
Eucgr.H02332 Eucalyptus grandis HOM05D004917 ORTHO05D005954 3.0e-87 325.9 213 71.4
Thecc.01G076300 Theobroma cacao HOM05D004917 ORTHO05D005954 3.0e-87 325.9 226 68.6
Sabra14G0006700 Salix brachista HOM05D004917 ORTHO05D005954 6.7e-87 324.7 197 74.1
VMungo0251G1412 Vigna mungo HOM05D004917 ORTHO05D005954 6.7e-87 324.7 210 72.9
COL.COLO4_11616 Corchorus olitorius HOM05D004917 ORTHO05D005954 8.8e-87 324.3 202 72.3
Hma1.2p1_0424F.1_g150480 Hydrangea macrophylla HOM05D004917 ORTHO05D005954 8.8e-87 324.3 226 68.1
FAN26G0787 Fragaria x ananassa HOM05D004917 ORTHO05D005954 1.5e-86 323.6 207 73.9
Gohir.D10G098900 Gossypium hirsutum HOM05D004917 ORTHO05D005954 1.5e-86 323.6 203 72.4
Gorai.011G108500 Gossypium raimondii HOM05D004917 ORTHO05D005954 1.5e-86 323.6 203 72.9
PGSC0003DMG400003322 Solanum tuberosum HOM05D004917 ORTHO05D005954 1.5e-86 323.6 200 73.0
Ciclev10026314m.g Citrus clementina HOM05D004917 ORTHO05D005954 2.0e-86 323.2 221 68.3
Potri.014G012100 Populus trichocarpa HOM05D004917 ORTHO05D005954 4.4e-86 322.0 269 59.5
Gohir.A10G089200 Gossypium hirsutum HOM05D004917 ORTHO05D005954 7.5e-86 321.2 203 71.9
Lj4g0024725 Lotus japonicus HOM05D004917 ORTHO05D005954 7.5e-86 321.2 224 69.6
QL06p038930 Quercus lobata HOM05D004917 ORTHO05D005954 7.5e-86 321.2 265 60.4
Sopen02g014680 Solanum pennellii HOM05D004917 ORTHO05D005954 7.5e-86 321.2 200 73.0
TAR628G1580 Trochodendron aralioides HOM05D004917 ORTHO05D005954 7.5e-86 321.2 200 73.0
Actinidia16409 Actinidia chinensis HOM05D004917 ORTHO05D005954 9.7e-86 320.9 201 70.1
Aqoxy1G00260 Aquilegia oxysepala HOM05D004917 ORTHO05D005954 9.7e-86 320.9 224 67.9
GSVIVG01004399001 Vitis vinifera HOM05D004917 ORTHO05D005954 9.7e-86 320.9 240 64.6
FAN19G2004 Fragaria x ananassa HOM05D004917 ORTHO05D005954 1.7e-85 320.1 252 64.7
CiPaw.01G001900 Carya illinoinensis HOM05D004917 ORTHO05D005954 2.2e-85 319.7 222 68.5
FAN23G1748 Fragaria x ananassa HOM05D004917 ORTHO05D005954 2.2e-85 319.7 266 61.3
Psat4g080360 Pisum sativum HOM05D004917 ORTHO05D005954 2.8e-85 319.3 222 69.8
Atru.chr3.1060 Acer truncatum HOM05D004917 ORTHO05D005954 3.7e-85 318.9 222 68.5
Thecc.01G076400 Theobroma cacao HOM05D004917 ORTHO05D005954 6.3e-85 318.2 202 71.3
EL10Ac6g15593 Beta vulgaris HOM05D004917 ORTHO05D005954 8.2e-85 317.8 225 68.0
MD02G1189600 Malus domestica HOM05D004917 ORTHO05D005954 8.2e-85 317.8 272 60.7
Glyma.17G158500 Glycine max HOM05D004917 ORTHO05D005954 1.4e-84 317.0 213 70.9
Phvul.003G232900 Phaseolus vulgaris HOM05D004917 ORTHO05D005954 1.8e-84 316.6 210 71.9
Manes.13G109000 Manihot esculenta HOM05D004917 ORTHO05D005954 2.4e-84 316.2 210 70.0
RcHm_v2.0_Chr2g0108751 Rosa chinensis HOM05D004917 ORTHO05D005954 2.4e-84 316.2 261 60.5
Sc07g0000430 Simmondsia chinensis HOM05D004917 ORTHO05D005954 2.4e-84 316.2 191 75.4
FvH4_1g18230 Fragaria vesca HOM05D004917 ORTHO05D005954 7.0e-84 314.7 261 60.9
FAN19G0182 Fragaria x ananassa HOM05D004917 ORTHO05D005954 7.0e-84 314.7 261 60.9
AUR62004032 Chenopodium quinoa HOM05D004917 ORTHO05D005954 9.1e-84 314.3 184 77.7
COL.COLO4_11615 Corchorus olitorius HOM05D004917 ORTHO05D005954 9.1e-84 314.3 227 65.6
Glyma.17G158400 Glycine max HOM05D004917 ORTHO05D005954 2.0e-83 313.2 214 69.2
Eucgr.H02333 Eucalyptus grandis HOM05D004917 ORTHO05D005954 2.7e-83 312.8 216 69.0
Phvul.003G232800 Phaseolus vulgaris HOM05D004917 ORTHO05D005954 4.5e-83 312.0 221 68.3
Ca_22095_v3 Cicer arietinum L. HOM05D004917 ORTHO05D005954 5.9e-83 311.6 224 67.4
AUR62007540 Chenopodium quinoa HOM05D004917 ORTHO05D005954 7.7e-83 311.2 184 76.6
Sed0017274 Sechium edule HOM05D004917 ORTHO05D005954 1.0e-82 310.8 248 61.3
arahy.Tifrunner.gnm1.ann1.UB5R5Q Arachis hypogaea HOM05D004917 ORTHO05D005954 1.3e-82 310.5 237 65.8
Cfa004388 Carpinus fangiana HOM05D004917 ORTHO05D005954 1.3e-82 310.5 213 68.5
TWI74G1062 Tripterygium wilfordii HOM05D004917 ORTHO05D005954 1.3e-82 310.5 224 64.7
PSO017G2968 Papaver somniferum HOM05D004917 ORTHO05D005954 2.2e-82 309.7 260 59.2
Nn5g30667 Nelumbo nucifera HOM05D004917 ORTHO05D005954 2.9e-82 309.3 270 58.9
Gorai.008G085700 Gossypium raimondii HOM05D004917 ORTHO05D005954 5.0e-82 308.5 192 72.4
arahy.Tifrunner.gnm1.ann1.1K25L2 Arachis hypogaea HOM05D004917 ORTHO05D005954 6.5e-82 308.1 237 64.6
PGR102G2131 Punica granatum HOM05D004917 ORTHO05D005954 6.5e-82 308.1 209 70.8
Medtr4g097500 Medicago truncatula HOM05D004917 ORTHO05D005954 8.5e-82 307.8 222 68.0
SalBow5G1886 Salvia bowleyana HOM05D004917 ORTHO05D005954 8.5e-82 307.8 218 65.6
GSVIVG01007444001 Vitis vinifera HOM05D004917 ORTHO05D005954 8.5e-82 307.8 199 70.4
Gohir.D12G076900 Gossypium hirsutum HOM05D004917 ORTHO05D005954 1.5e-81 307.0 192 71.9
Ah.03g140710 Amaranthus hybridus HOM05D004917 ORTHO05D005954 4.2e-81 305.4 256 62.1
VMungo0251G2665 Vigna mungo HOM05D004917 ORTHO05D005954 4.2e-81 305.4 219 69.4
CsaV3_2G016370 Cucumis sativus L. HOM05D004917 ORTHO05D005954 2.1e-80 303.1 220 65.9
Os03g0729200 Oryza sativa ssp. japonica HOM05D004917 ORTHO05D005954 6.1e-80 301.6 190 72.1
Migut.L00432 Erythranthe guttata HOM05D004917 ORTHO05D005954 8.0e-80 301.2 213 62.9
Lsat_1_v5_gn_4_160020 Lactuca sativa HOM05D004917 ORTHO05D005954 1.2e-78 297.4 201 68.2
PSO170G3850 Papaver somniferum HOM05D004917 ORTHO05D005954 1.2e-78 297.4 255 58.8
DCAR_014953 Daucus carota HOM05D004917 ORTHO05D005954 5.7e-78 295.0 224 64.3
ECA232G4556 Erigeron canadensis HOM05D004917 ORTHO05D005954 5.7e-78 295.0 223 61.9
PSO170G3322 Papaver somniferum HOM05D004917 ORTHO05D005954 9.8e-78 294.3 187 69.5
ATR0739G130 Amborella trichopoda HOM05D004917 ORTHO05D005954 1.3e-77 293.9 198 66.7
FvH4_1g18251 Fragaria vesca HOM05D004917 ORTHO05D005954 2.2e-77 293.1 198 68.2
SEGI_14750 Sequoiadendron giganteum HOM05D004917 ORTHO05D005954 2.8e-77 292.7 187 70.1
Zm00001eb215580 Zea mays HOM05D004917 ORTHO05D005954 3.7e-77 292.4 229 61.1
HanXRQChr09g0262071 Helianthus annuus HOM05D004917 ORTHO05D005954 1.1e-76 290.8 195 66.7
Lalb_Chr11g0075991 Lupinus albus HOM05D004917 ORTHO05D005954 1.1e-76 290.8 192 71.4
PSO017G2694 Papaver somniferum HOM05D004917 ORTHO05D005954 2.4e-76 289.7 186 68.8
FAN28G2407 Fragaria x ananassa HOM05D004917 ORTHO05D005954 3.5e-75 285.8 199 66.8
SGA_v2.0_scaffold79G25603 Striga asiatica HOM05D004917 ORTHO05D005954 1.9e-73 280.0 176 71.6
CSS0005558 Camellia sinensis var. sinensis HOM05D004917 ORTHO05D005954 9.4e-73 277.7 213 62.4
ClCG02G012210 Citrullus lanatus HOM05D004917 ORTHO05D005954 9.4e-73 277.7 201 65.2
PSO170G4503 Papaver somniferum HOM05D004917 ORTHO05D005954 2.7e-72 276.2 200 64.5
PSO017G4293 Papaver somniferum HOM05D004917 ORTHO05D005954 4.7e-72 275.4 201 63.7
Lj4A165T49 Lonicera japonica HOM05D004917 ORTHO05D005954 6.1e-72 275.0 228 59.2
CDE02G4371 Ceratophyllum demersum HOM05D004917 ORTHO05D005954 1.8e-71 273.5 223 59.6
MELO3C020846.2 Cucumis melo HOM05D004917 ORTHO05D005954 8.8e-71 271.2 190 67.9
Oeu013341.1 Olea europaea HOM05D004917 ORTHO05D005954 2.0e-70 270.0 161 76.4
GSVIVG01007168001 Vitis vinifera HOM05D004917 ORTHO05D005954 3.4e-70 269.2 160 76.9
FAN26G1896 Fragaria x ananassa HOM05D004917 ORTHO05D005954 3.7e-69 265.8 266 53.8
Nitab4.5_0000036g0150 Nicotiana tabacum HOM05D004917 ORTHO05D005954 6.3e-69 265.0 161 73.9
RcHm_v2.0_Chr2g0108771 Rosa chinensis HOM05D004917 ORTHO05D005954 1.8e-68 263.5 202 63.4
DCAR_000455 Daucus carota HOM05D004917 ORTHO05D005954 4.1e-68 262.3 167 70.7
Migut.L00430 Erythranthe guttata HOM05D004917 ORTHO05D005954 9.2e-68 261.2 205 58.0
Haze_15025 Corylus avellana HOM05D004917 ORTHO05D005954 1.6e-67 260.4 205 61.5
Dinv26959 Davidia involucrata HOM05D004917 ORTHO05D005954 1.3e-66 257.3 161 73.3
Peaxi162Scf00449g00417 Petunia axillaris HOM05D004917 ORTHO05D005954 1.1e-65 254.2 221 58.8
Os03g0729300 Oryza sativa ssp. japonica HOM05D004917 ORTHO05D005954 1.6e-64 250.4 184 62.5
Nitab4.5_0007379g0030 Nicotiana tabacum HOM05D004917 ORTHO05D005954 6.8e-63 245.0 214 56.5
Pp3c27_7100 Physcomitrium patens HOM05D004917 ORTHO05D005954 2.4e-60 236.5 182 54.4
MBI16_g06077_MAGBIO Magnolia biondii HOM05D004917 ORTHO05D005954 2.8e-56 223.0 213 54.9
Hund16417 Selenicereus undatus HOM05D004917 ORTHO05D005954 9.8e-54 214.5 148 70.3
unitig_37.g11996 Utricularia gibba HOM05D004917 ORTHO05D005954 1.3e-53 214.2 146 65.1
AagrBONN_evm.TU.Sc2ySwM_368.1530 Anthoceros agrestis HOM05D004917 ORTHO05D005954 4.1e-52 209.1 209 48.3
Zm00001eb056030 Zea mays HOM05D004917 ORTHO05D005954 8.9e-47 191.4 127 70.1
FAN23G2689 Fragaria x ananassa HOM05D004917 ORTHO05D005954 1.9e-41 173.7 166 56.0
QL06p038908 Quercus lobata HOM05D004917 ORTHO05D005954 2.0e-38 163.7 102 71.6
GSVIVG01004400001 Vitis vinifera HOM05D004917 ORTHO05D005954 9.9e-38 161.4 103 68.9
ATR0739G160 Amborella trichopoda HOM05D004917 ORTHO05D005954 7.1e-36 155.2 112 58.9
GSVIVG01007167001 Vitis vinifera HOM05D004917 ORTHO05D005954 2.5e-33 146.7 99 68.7
QL06p038910 Quercus lobata HOM05D004917 ORTHO05D005954 3.1e-31 139.8 90 71.1
QL02p069743 Quercus lobata HOM05D004917 ORTHO05D005954 1.7e-29 134.0 93 66.7
FAN26G2723 Fragaria x ananassa HOM05D004917 ORTHO05D005954 7.1e-28 128.6 197 37.6
Nitab4.5_0000848g0140 Nicotiana tabacum HOM05D007024 ORTHO05D008865 3.0e-26 123.2 220 34.1
Nitab4.5_0010883g0010 Nicotiana tabacum HOM05D007024 ORTHO05D008865 4.3e-25 119.4 185 36.8
MCO14G127 Micromonas commoda HOM05D004917 ORTHO05D005954 2.1e-24 117.1 171 40.4
Peaxi162Scf01517g00138 Petunia axillaris HOM05D007024 ORTHO05D008865 1.8e-23 114.0 190 36.3
Aqoxy4G03151 Aquilegia oxysepala HOM05D007024 ORTHO05D008865 3.1e-23 113.2 187 34.8
Sc20g0004190 Simmondsia chinensis HOM05D007024 ORTHO05D008865 4.0e-23 112.8 187 35.8
Sopen09g002060 Solanum pennellii HOM05D007024 ORTHO05D008865 5.3e-23 112.5 216 32.9
FAN28G0406 Fragaria x ananassa HOM05D004917 ORTHO05D005954 6.9e-23 112.1 101 54.5
PSO063G4670 Papaver somniferum HOM05D007024 ORTHO05D008865 9.0e-23 111.7 216 32.9
Oeu029107.1 Olea europaea HOM05D007024 ORTHO05D008865 1.2e-22 111.3 227 31.3
Solyc09g007190.3 Solanum lycopersicum HOM05D007024 ORTHO05D008865 1.2e-22 111.3 201 33.8
CAN.G350.48 Capsicum annuum HOM05D007024 ORTHO05D008865 1.5e-22 110.9 186 34.9
Os03g0284600 Oryza sativa ssp. japonica HOM05D007024 ORTHO05D008865 2.0e-22 110.5 210 31.9
MBI18_g34970_MAGBIO Magnolia biondii HOM05D007024 ORTHO05D008865 2.6e-22 110.2 197 33.0
vmacro08688 Vaccinium macrocarpon HOM05D007024 ORTHO05D008865 4.5e-22 109.4 187 33.7
Sp4g19560 Schrenkiella parvula HOM05D007024 ORTHO05D008865 5.8e-22 109.0 224 33.5
SMO353G0397 Selaginella moellendorffii HOM05D007024 ORTHO05D008865 7.6e-22 108.6 176 36.9
PSO782G5617 Papaver somniferum HOM05D007024 ORTHO05D008865 1.7e-21 107.5 186 34.4
Gohir.A09G160700 Gossypium hirsutum HOM05D007024 ORTHO05D008865 6.4e-21 105.5 187 33.2
CSS0004845 Camellia sinensis var. sinensis HOM05D007024 ORTHO05D008865 1.9e-20 104.0 187 33.2
Zm00001eb013030 Zea mays HOM05D007024 ORTHO05D008865 1.9e-20 104.0 186 32.3
unitig_746.g26783 Utricularia gibba HOM05D007024 ORTHO05D008865 3.2e-20 103.2 180 33.3
Potri.007G007201 Populus trichocarpa HOM05D004917 ORTHO05D005954 2.1e-19 100.5 68 73.5
Sabra07G0005500 Salix brachista HOM05D004917 ORTHO05D005954 6.0e-19 99.0 158 41.8
PRCOL_00004664 Prasinoderma coloniale HOM05D004917 ORTHO05D005954 5.1e-18 95.9 132 42.4
PGSC0003DMG400027897 Solanum tuberosum HOM05D007024 ORTHO05D008865 3.3e-17 93.2 158 36.1
Hund12062 Selenicereus undatus HOM05D007024 ORTHO05D008865 1.6e-16 90.9 170 31.8
AagrBONN_evm.TU.Sc2ySwM_344.3825 Anthoceros agrestis HOM05D007024 ORTHO05D008865 2.1e-16 90.5 128 37.5
arahy.Tifrunner.gnm1.ann1.F27BB1 Arachis hypogaea HOM05D004917 ORTHO05D005954 2.8e-16 90.1 53 79.2
Actinidia05279 Actinidia chinensis HOM05D007024 ORTHO05D008865 4.8e-16 89.4 169 33.1
Zm00001eb030360 Zea mays HOM05D004917 ORTHO05D005954 1.2e-14 84.7 89 52.8
CDE04G0730 Ceratophyllum demersum HOM05D007024 ORTHO05D008865 4.5e-14 82.8 216 30.6
Mapoly0154s0013 Marchantia polymorpha HOM05D007024 ORTHO05D008865 5.8e-14 82.4 223 28.7
TWI74G0989 Tripterygium wilfordii HOM05D007024 ORTHO05D008865 7.6e-14 82.0 120 36.7
SGA_v2.0_scaffold94G28656 Striga asiatica HOM05D007024 ORTHO05D008865 1.4e-12 77.8 145 33.1
MCO06G061 Micromonas commoda HOM05D004917 ORTHO05D005954 1.9e-12 77.4 140 33.6
CBR_g9017 Chara braunii HOM05D001161 ORTHO05D000497 2.1e-11 73.9 167 27.5
Ah.15g092040 Amaranthus hybridus HOM05D006367 ORTHO05D007942 1.3e-10 71.2 135 32.6
Cre17.g697050 Chlamydomonas reinhardtii HOM05D004917 ORTHO05D005954 2.3e-10 70.5 136 35.3
MCO07G374 Micromonas commoda HOM05D004917 ORTHO05D005954 1.9e-09 67.4 125 33.6
ATR0739G073 Amborella trichopoda HOM05D004917 ORTHO05D005954 2.5e-09 67.0 41 63.4
Gohir.A12G080465 Gossypium hirsutum HOM05D004917 ORTHO05D005954 3.3e-09 66.6 49 61.2
PRCOL_00002665 Prasinoderma coloniale HOM05D006376 ORTHO05D008046 1.6e-08 64.3 110 34.5
Haze_02356 Corylus avellana HOM05D004917 ORTHO05D005954 2.1e-08 63.9 50 66.0
SEGI_25621 Sequoiadendron giganteum HOM05D007024 ORTHO05D008865 1.1e-07 61.6 85 37.6
GSVIVG01007445001 Vitis vinifera HOM05D004917 ORTHO05D005954 2.6e-06 57.0 50 54.0


User provided reference genes

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