Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s2659 Capsella rubella HOM05D002943 ORTHO05D002685 5.7e-53 212.2 318 100.0
AL5G29510 Arabidopsis lyrata HOM05D002943 ORTHO05D002685 3.8e-33 146.4 319 89.0
Carub.0005s1601 Capsella rubella HOM05D002943 ORTHO05D002685 8.6e-33 145.2 319 86.2
CARHR158730 Cardamine hirsuta HOM05D002943 ORTHO05D002685 1.5e-32 144.4 320 85.9
AT3G49660 Arabidopsis thaliana HOM05D002943 ORTHO05D002685 1.9e-32 144.1 319 87.8
THA.LOC104798430 Tarenaya hassleriana HOM05D002943 ORTHO05D002685 3.3e-32 143.3 321 84.1
Thhalv10010551m.g Eutrema salsugineum HOM05D002943 ORTHO05D002685 3.6e-31 139.8 319 86.8
Aa31LG4G18140 Aethionema arabicum HOM05D002943 ORTHO05D002685 1.4e-30 137.9 319 88.1
Sp5g12420 Schrenkiella parvula HOM05D002943 ORTHO05D002685 8.9e-30 135.2 319 88.4
BcaB01g00685 Brassica carinata HOM05D002943 ORTHO05D002685 8.3e-28 128.6 318 87.1
BcaC01g02426 Brassica carinata HOM05D002943 ORTHO05D002685 3.5e-26 123.2 315 86.0
C03p65420 Brassica napus HOM05D002943 ORTHO05D002685 3.5e-26 123.2 315 86.0
BolC3t18794H Brassica oleracea HOM05D002943 ORTHO05D002685 3.5e-26 123.2 315 86.0
AL8G43350 Arabidopsis lyrata HOM05D000117 ORTHO05D000070 2.3e-25 120.6 109 85.3
AL8G43360 Arabidopsis lyrata HOM05D001456 ORTHO05D013730 2.3e-25 120.6 109 85.3
CARHR279680 Cardamine hirsuta HOM05D002943 ORTHO05D002685 1.2e-23 114.8 108 86.1
A06p28410 Brassica napus HOM05D002943 ORTHO05D002685 3.6e-23 113.2 316 84.5
Phvul.003G104000 Phaseolus vulgaris HOM05D002943 ORTHO05D002685 1.4e-22 111.3 314 75.2
BraA06t25785Z Brassica rapa HOM05D002943 ORTHO05D002685 1.8e-22 110.9 318 84.3
Lalb_Chr07g0177661 Lupinus albus HOM05D002943 ORTHO05D002685 2.3e-22 110.5 314 75.5
VMungo1215G0795 Vigna mungo HOM05D002943 ORTHO05D002685 5.2e-22 109.4 314 74.8
arahy.Tifrunner.gnm1.ann1.DT5KC6 Arachis hypogaea HOM05D002943 ORTHO05D002685 1.5e-21 107.8 314 73.9
arahy.Tifrunner.gnm1.ann1.MJC5Q8 Arachis hypogaea HOM05D002943 ORTHO05D002685 1.5e-21 107.8 314 73.9
arahy.Tifrunner.gnm1.ann1.RFJS66 Arachis hypogaea HOM05D002943 ORTHO05D002685 1.5e-21 107.8 314 74.5
Ca_14440_v3 Cicer arietinum L. HOM05D002943 ORTHO05D002685 2.6e-21 107.1 314 74.2
CiPaw.07G041100 Carya illinoinensis HOM05D002943 ORTHO05D002685 3.4e-21 106.7 313 83.1
Thecc.01G081600 Theobroma cacao HOM05D002943 ORTHO05D002685 3.4e-21 106.7 311 80.1
ClCG01G018070 Citrullus lanatus HOM05D002943 ORTHO05D002685 4.4e-21 106.3 319 82.4
Medtr4g119620 Medicago truncatula HOM05D002943 ORTHO05D002685 4.4e-21 106.3 327 72.2
Lj4g0007346 Lotus japonicus HOM05D002943 ORTHO05D002685 5.8e-21 105.9 320 81.9
COL.COLO4_11661 Corchorus olitorius HOM05D002943 ORTHO05D002685 1.7e-20 104.4 311 83.9
Haze_03949 Corylus avellana HOM05D002943 ORTHO05D002685 2.2e-20 104.0 311 81.4
Lalb_Chr13g0303681 Lupinus albus HOM05D002943 ORTHO05D002685 2.2e-20 104.0 314 72.9
CsaV3_6G044600 Cucumis sativus L. HOM05D002943 ORTHO05D002685 3.7e-20 103.2 317 81.7
Glyma.07G248900 Glycine max HOM05D002943 ORTHO05D002685 4.9e-20 102.8 311 74.3
Cfa006809 Carpinus fangiana HOM05D002943 ORTHO05D002685 8.3e-20 102.1 311 83.6
Gohir.D11G212900 Gossypium hirsutum HOM05D002943 ORTHO05D002685 8.3e-20 102.1 311 84.2
Gorai.007G228800 Gossypium raimondii HOM05D002943 ORTHO05D002685 8.3e-20 102.1 311 84.2
Manes.12G119800 Manihot esculenta HOM05D002943 ORTHO05D002685 1.1e-19 101.7 312 83.7
Gohir.A11G210200 Gossypium hirsutum HOM05D002943 ORTHO05D002685 1.9e-19 100.9 311 83.9
TPR.G3207 Trifolium pratense HOM05D002943 ORTHO05D002685 1.9e-19 100.9 314 73.6
TWI74G1409 Tripterygium wilfordii HOM05D002943 ORTHO05D002685 3.2e-19 100.1 311 82.0
Cpa.g.sc129.34 Carica papaya HOM05D002943 ORTHO05D002685 7.0e-19 99.0 327 71.6
Duzib147G1423 Durio zibethinus HOM05D002943 ORTHO05D002685 7.0e-19 99.0 311 82.0
Sc09g0001310 Simmondsia chinensis HOM05D002943 ORTHO05D002685 9.2e-19 98.6 312 81.7
CANSAT01G2837 Cannabis sativa HOM05D002943 ORTHO05D002685 3.5e-18 96.7 311 81.7
Glyma.17G025400 Glycine max HOM05D002943 ORTHO05D002685 3.5e-18 96.7 311 73.0
Ciclev10026097m.g Citrus clementina HOM05D002943 ORTHO05D002685 4.6e-18 96.3 322 79.8
Psat0s2006g0120 Pisum sativum HOM05D002943 ORTHO05D002685 6.0e-18 95.9 314 69.7
Ah.06g195170 Amaranthus hybridus HOM05D002943 ORTHO05D002685 1.0e-17 95.1 311 77.2
GSVIVG01003702001 Vitis vinifera HOM05D002943 ORTHO05D002685 1.7e-17 94.4 310 83.5
Duzib187G0476 Durio zibethinus HOM05D002943 ORTHO05D002685 3.0e-17 93.6 311 82.3
TWI53G1603 Tripterygium wilfordii HOM05D002943 ORTHO05D002685 3.9e-17 93.2 310 81.6
RcHm_v2.0_Chr2g0109631 Rosa chinensis HOM05D002943 ORTHO05D002685 5.0e-17 92.8 311 72.7
Sabra07G0007300 Salix brachista HOM05D002943 ORTHO05D002685 6.6e-17 92.4 308 82.1
Sed0027180 Sechium edule HOM05D002943 ORTHO05D002685 6.6e-17 92.4 319 79.0
Hund07388 Selenicereus undatus HOM05D002943 ORTHO05D002685 1.5e-16 91.3 311 81.0
SGA_v2.0_scaffold121G33104 Striga asiatica HOM05D002943 ORTHO05D002685 3.3e-16 90.1 313 77.0
Potri.007G009500 Populus trichocarpa HOM05D002943 ORTHO05D002685 4.3e-16 89.7 310 81.3
SalBow3G3920 Salvia bowleyana HOM05D002943 ORTHO05D002685 6.2e-15 85.9 311 76.8
Aqoxy5G01866 Aquilegia oxysepala HOM05D002943 ORTHO05D002685 1.8e-14 84.3 309 80.9
FvH4_1g18760 Fragaria vesca HOM05D002943 ORTHO05D002685 1.8e-14 84.3 309 82.2
FAN19G1191 Fragaria x ananassa HOM05D002943 ORTHO05D002685 1.8e-14 84.3 309 82.2
FAN23G1457 Fragaria x ananassa HOM05D002943 ORTHO05D002685 4.0e-14 83.2 309 82.2
FAN28G1172 Fragaria x ananassa HOM05D002943 ORTHO05D002685 4.0e-14 83.2 309 82.2
Prupe.6G211800 Prunus persica HOM05D002943 ORTHO05D002685 5.2e-14 82.8 312 71.2
SHI12121 Sapria himalayana HOM05D002943 ORTHO05D002685 8.9e-14 82.0 307 79.5
MD16G1282400 Malus domestica HOM05D002943 ORTHO05D002685 1.5e-13 81.3 310 81.0
MD01G1047000 Malus domestica HOM05D002943 ORTHO05D002685 2.0e-13 80.9 310 81.0
Potri.005G148500 Populus trichocarpa HOM05D002943 ORTHO05D002685 2.0e-13 80.9 309 81.6
AUR62000261 Chenopodium quinoa HOM05D002943 ORTHO05D002685 3.4e-13 80.1 306 66.3
EL10Ac4g10037 Beta vulgaris HOM05D002943 ORTHO05D002685 5.8e-13 79.3 311 76.5
Migut.H00305 Erythranthe guttata HOM05D002943 ORTHO05D002685 2.9e-12 77.0 311 80.7
Rhsim10G0085400 Rhododendron simsii HOM05D002943 ORTHO05D002685 8.3e-12 75.5 309 77.3
PGR031G0631 Punica granatum HOM05D002943 ORTHO05D002685 3.2e-11 73.6 311 79.1
Atru.chr3.1120 Acer truncatum HOM05D002943 ORTHO05D002685 1.6e-10 71.2 129 86.0
QL06p037843 Quercus lobata HOM05D002943 ORTHO05D002685 1.6e-10 71.2 326 56.1
Oeu025000.1 Olea europaea HOM05D002943 ORTHO05D002685 2.1e-10 70.9 314 78.7
Actinidia11939 Actinidia chinensis HOM05D002943 ORTHO05D002685 3.5e-10 70.1 309 49.5
Hma1.2p1_0996F.1_g245920 Hydrangea macrophylla HOM05D002943 ORTHO05D002685 7.8e-10 68.9 315 78.4
Zm00001eb055840 Zea mays HOM05D002943 ORTHO05D002685 1.7e-09 67.8 310 74.2
AUR62006609 Chenopodium quinoa HOM05D002943 ORTHO05D002685 2.3e-09 67.4 306 58.5
Dinv36997 Davidia involucrata HOM05D002943 ORTHO05D002685 3.0e-09 67.0 306 80.7
Lsat_1_v5_gn_2_81981 Lactuca sativa HOM05D002943 ORTHO05D002685 3.9e-09 66.6 303 81.2
Nitab4.5_0000093g0160 Nicotiana tabacum HOM05D002943 ORTHO05D002685 6.6e-09 65.9 306 79.7
ECA238G4010 Erigeron canadensis HOM05D002943 ORTHO05D002685 8.6e-09 65.5 124 86.3
HanXRQChr14g0447041 Helianthus annuus HOM05D002943 ORTHO05D002685 8.6e-09 65.5 126 85.7
Nitab4.5_0000396g0220 Nicotiana tabacum HOM05D002943 ORTHO05D002685 8.6e-09 65.5 306 80.1
Eucgr.H02400 Eucalyptus grandis HOM05D002943 ORTHO05D002685 1.5e-08 64.7 311 78.5
PSO541G4758 Papaver somniferum HOM05D002943 ORTHO05D002685 1.5e-08 64.7 129 83.7
PSO675G4958 Papaver somniferum HOM05D002943 ORTHO05D002685 1.5e-08 64.7 129 83.7
Cc07_g07680 Coffea canephora HOM05D002943 ORTHO05D002685 1.9e-08 64.3 126 84.9
MBI16_g14668_MAGBIO Magnolia biondii HOM05D002943 ORTHO05D002685 1.9e-08 64.3 311 76.2
Oeu054736.1 Olea europaea HOM05D002943 ORTHO05D002685 3.3e-08 63.5 82 40.2
Psat0s2006g0160 Pisum sativum HOM05D002943 ORTHO05D002685 3.3e-08 63.5 100 65.0
TAR376G1143 Trochodendron aralioides HOM05D002943 ORTHO05D002685 3.3e-08 63.5 129 83.7
Actinidia36393 Actinidia chinensis HOM05D002943 ORTHO05D002685 5.6e-08 62.8 129 83.7
Ciclev10033651m.g Citrus clementina HOM05D002943 ORTHO05D002685 5.6e-08 62.8 71 46.5
Lj4A173G12 Lonicera japonica HOM05D002943 ORTHO05D002685 5.6e-08 62.8 129 82.9
TAR628G0306 Trochodendron aralioides HOM05D002943 ORTHO05D002685 5.6e-08 62.8 129 82.9
Nn1g05949 Nelumbo nucifera HOM05D002943 ORTHO05D002685 7.3e-08 62.4 129 82.9
Os03g0725400 Oryza sativa ssp. japonica HOM05D002943 ORTHO05D002685 7.3e-08 62.4 316 65.5
unitig_0.g486 Utricularia gibba HOM05D002943 ORTHO05D002685 7.3e-08 62.4 100 64.0
Oeu012607.1 Olea europaea HOM05D002943 ORTHO05D002685 9.5e-08 62.0 124 83.1
Dinv26988 Davidia involucrata HOM05D002943 ORTHO05D002685 1.2e-07 61.6 317 76.7
Lj2C426T10 Lonicera japonica HOM05D002943 ORTHO05D002685 3.6e-07 60.1 83 38.6
Nn1g05606 Nelumbo nucifera HOM05D002943 ORTHO05D002685 3.6e-07 60.1 85 37.6
vmacro05467 Vaccinium macrocarpon HOM05D002943 ORTHO05D002685 3.6e-07 60.1 85 38.8
CANSAT56G2303 Cannabis sativa HOM05D002943 ORTHO05D002685 4.7e-07 59.7 307 55.7
CSS0032407 Camellia sinensis var. sinensis HOM05D002943 ORTHO05D002685 1.1e-06 58.5 85 36.5
Ciclev10021263m.g Citrus clementina HOM05D002943 ORTHO05D002685 1.1e-06 58.5 310 71.9
Zm00001eb270960 Zea mays HOM05D005612 ORTHO05D002685 1.1e-06 58.5 84 34.5
ATR0332G110 Amborella trichopoda HOM05D002943 ORTHO05D002685 1.8e-06 57.8 129 81.4
CiPaw.07G090800 Carya illinoinensis HOM05D002943 ORTHO05D002685 1.8e-06 57.8 309 61.2
Pp3c10_4790 Physcomitrium patens HOM05D009278 ORTHO05D002685 2.3e-06 57.4 120 85.0
Hund02771 Selenicereus undatus HOM05D002943 ORTHO05D002685 2.3e-06 57.4 43 62.8
CDE06G1770 Ceratophyllum demersum HOM05D002943 ORTHO05D002685 3.1e-06 57.0 129 79.8
Zm00001eb276600 Zea mays HOM05D002943 ORTHO05D002685 5.2e-06 56.2 84 33.3
Mapoly0035s0097 Marchantia polymorpha HOM05D002943 ORTHO05D002685 6.8e-06 55.8 122 86.1
CSS0049699 Camellia sinensis var. sinensis HOM05D002943 ORTHO05D002685 8.9e-06 55.5 98 66.3
Dinv34766 Davidia involucrata HOM05D002943 ORTHO05D002685 8.9e-06 55.5 45 57.8


User provided reference genes

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