Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s2635 Capsella rubella HOM05D007889 ORTHO05D009987 8.5e-42 173.3 92 100.0
AT5G65495 Arabidopsis thaliana HOM05D007889 ORTHO05D009987 2.8e-37 158.3 93 92.5
AL8G43080 Arabidopsis lyrata HOM05D007889 ORTHO05D009987 4.1e-36 154.5 94 91.5
Sp2g28580 Schrenkiella parvula HOM05D007889 ORTHO05D009987 1.2e-32 142.9 94 86.2
BcaC01g02781 Brassica carinata HOM05D007889 ORTHO05D009987 2.7e-32 141.7 95 87.4
C03p60490 Brassica napus HOM05D007889 ORTHO05D009987 2.7e-32 141.7 95 87.4
Thhalv10005325m.g Eutrema salsugineum HOM05D007889 ORTHO05D009987 3.6e-32 141.4 94 84.0
BolC3t18310H Brassica oleracea HOM05D007889 ORTHO05D009987 1.8e-31 139.0 95 86.3
BraA06t26160Z Brassica rapa HOM05D007889 ORTHO05D009987 1.7e-29 132.5 91 85.7
Aa31LG1G16500 Aethionema arabicum HOM05D007889 ORTHO05D009987 1.0e-26 123.2 92 77.2
THA.LOC109116914 Tarenaya hassleriana HOM05D007889 ORTHO05D009987 1.0e-23 113.2 91 69.2
Manes.12G125800 Manihot esculenta HOM05D007889 ORTHO05D009987 3.0e-23 111.7 89 67.4
Manes.13G100900 Manihot esculenta HOM05D007889 ORTHO05D009987 3.4e-22 108.2 91 67.0
THA.LOC109116122 Tarenaya hassleriana HOM05D007889 ORTHO05D009987 1.3e-21 106.3 89 61.8
TWI74G1088 Tripterygium wilfordii HOM05D007889 ORTHO05D009987 8.3e-21 103.6 91 63.7
CANSAT01G1217 Cannabis sativa HOM05D007889 ORTHO05D009987 3.1e-20 101.7 93 63.4
Cpa.g.sc55.18 Carica papaya HOM05D007889 ORTHO05D009987 5.4e-20 100.9 92 64.1
Cc07_g14040 Coffea canephora HOM05D007889 ORTHO05D009987 7.0e-20 100.5 71 73.2
Dinv36939 Davidia involucrata HOM05D007889 ORTHO05D009987 1.2e-19 99.8 92 62.0
Thecc.01G089900 Theobroma cacao HOM05D007889 ORTHO05D009987 1.6e-19 99.4 88 62.5
FAN23G2864 Fragaria x ananassa HOM05D007889 ORTHO05D009987 7.7e-19 97.1 89 62.9
FAN26G2710 Fragaria x ananassa HOM05D007889 ORTHO05D009987 7.7e-19 97.1 89 62.9
QL06p035849 Quercus lobata HOM05D007889 ORTHO05D009987 7.7e-19 97.1 96 59.4
FAN28G0932 Fragaria x ananassa HOM05D007889 ORTHO05D009987 1.0e-18 96.7 89 62.9
PGR102G1376 Punica granatum HOM05D007889 ORTHO05D009987 1.0e-18 96.7 96 58.3
FvH4_1g19600 Fragaria vesca HOM05D007889 ORTHO05D009987 1.3e-18 96.3 89 61.8
FAN19G1328 Fragaria x ananassa HOM05D007889 ORTHO05D009987 1.3e-18 96.3 89 61.8
COL.COLO4_27358 Corchorus olitorius HOM05D007889 ORTHO05D009987 2.9e-18 95.1 91 59.3
Gohir.A02G144900 Gossypium hirsutum HOM05D007889 ORTHO05D009987 3.8e-18 94.7 87 60.9
Gohir.D03G035700 Gossypium hirsutum HOM05D007889 ORTHO05D009987 3.8e-18 94.7 87 60.9
Atru.chr3.1237 Acer truncatum HOM05D007889 ORTHO05D009987 8.5e-18 93.6 93 59.1
CiPaw.07G047100 Carya illinoinensis HOM05D007889 ORTHO05D009987 8.5e-18 93.6 94 60.6
TWI77G0910 Tripterygium wilfordii HOM05D007889 ORTHO05D009987 8.5e-18 93.6 91 57.1
RcHm_v2.0_Chr2g0111151 Rosa chinensis HOM05D007889 ORTHO05D009987 1.1e-17 93.2 92 60.9
Haze_03881 Corylus avellana HOM05D007889 ORTHO05D009987 1.5e-17 92.8 93 58.1
Gorai.003G037300 Gossypium raimondii HOM05D007889 ORTHO05D009987 1.5e-17 92.8 87 59.8
Duzib147G1657 Durio zibethinus HOM05D007889 ORTHO05D009987 1.9e-17 92.4 91 60.4
CSS0006316 Camellia sinensis var. sinensis HOM05D007889 ORTHO05D009987 7.2e-17 90.5 92 58.7
CSS0045661 Camellia sinensis var. sinensis HOM05D007889 ORTHO05D009987 7.2e-17 90.5 92 58.7
MSTRG.15685 Avicennia marina HOM05D007889 ORTHO05D009987 1.6e-16 89.4 90 55.6
Lj4g0025467 Lotus japonicus HOM05D007889 ORTHO05D009987 2.8e-16 88.6 87 57.5
Actinidia25305 Actinidia chinensis HOM05D007889 ORTHO05D009987 3.6e-16 88.2 92 57.6
Ca_22615_v3 Cicer arietinum L. HOM05D007889 ORTHO05D009987 4.7e-16 87.8 86 57.0
Ciclev10026840m.g Citrus clementina HOM05D007889 ORTHO05D009987 4.7e-16 87.8 93 53.8
SalBow3G4637 Salvia bowleyana HOM05D007889 ORTHO05D009987 8.0e-16 87.0 91 57.1
unitig_32.g11801 Utricularia gibba HOM05D007889 ORTHO05D009987 1.0e-15 86.7 91 54.9
Migut.K00803 Erythranthe guttata HOM05D007889 ORTHO05D009987 2.3e-15 85.5 87 57.5
SGA_v2.0_scaffold195G40857 Striga asiatica HOM05D007889 ORTHO05D009987 5.2e-15 84.3 89 52.8
Nitab4.5_0006221g0010 Nicotiana tabacum HOM05D007889 ORTHO05D009987 1.2e-14 83.2 100 50.0
Nitab4.5_0006217g0010 Nicotiana tabacum HOM05D007889 ORTHO05D009987 2.0e-14 82.4 87 57.5
Ah.02g123520 Amaranthus hybridus HOM05D007889 ORTHO05D009987 2.6e-14 82.0 101 51.5
MELO3C032898.2 Cucumis melo HOM05D007889 ORTHO05D009987 2.6e-14 82.0 67 65.7
Oeu012264.1 Olea europaea HOM05D007889 ORTHO05D009987 2.6e-14 82.0 99 53.5
Psat4g119800 Pisum sativum HOM05D007889 ORTHO05D009987 2.6e-14 82.0 67 65.7
Solyc11g010680.4 Solanum lycopersicum HOM05D007889 ORTHO05D009987 3.4e-14 81.6 100 53.0
EL10Ac6g15200 Beta vulgaris HOM05D007889 ORTHO05D009987 4.4e-14 81.3 66 66.7
Rhsim10G0173200 Rhododendron simsii HOM05D007889 ORTHO05D009987 4.4e-14 81.3 62 74.2
Eucgr.L00470 Eucalyptus grandis HOM05D007889 ORTHO05D009987 9.8e-14 80.1 65 64.6
Sopen11g005480 Solanum pennellii HOM05D007889 ORTHO05D009987 9.8e-14 80.1 90 57.8
PGSC0003DMG402016199 Solanum tuberosum HOM05D007889 ORTHO05D009987 1.3e-13 79.7 90 57.8
Prupe.6G202300 Prunus persica HOM05D007889 ORTHO05D009987 1.7e-13 79.3 92 53.3
ECA232G4810 Erigeron canadensis HOM05D007889 ORTHO05D009987 3.7e-13 78.2 91 51.6
Medtr8g068560 Medicago truncatula HOM05D007889 ORTHO05D009987 3.7e-13 78.2 86 54.7
Lalb_Chr05g0228531 Lupinus albus HOM05D007889 ORTHO05D009987 2.4e-12 75.5 80 60.0
Nitab4.5_0007872g0020 Nicotiana tabacum HOM05D007889 ORTHO05D009987 2.4e-12 75.5 91 46.2
PSO541G6452 Papaver somniferum HOM05D007889 ORTHO05D009987 2.4e-12 75.5 67 59.7
Peaxi162Scf00474g00715 Petunia axillaris HOM05D007889 ORTHO05D009987 2.4e-12 75.5 89 53.9
Cfa006876 Carpinus fangiana HOM05D007889 ORTHO05D009987 3.1e-12 75.1 92 48.9
Lsat_1_v5_gn_4_143420 Lactuca sativa HOM05D007889 ORTHO05D009987 4.1e-12 74.7 94 50.0
AUR62003668 Chenopodium quinoa HOM05D007889 ORTHO05D009987 7.0e-12 73.9 97 44.3
Nitab4.5_0000902g0320 Nicotiana tabacum HOM05D007889 ORTHO05D009987 7.0e-12 73.9 91 46.2
Aqoxy5G01377 Aquilegia oxysepala HOM05D007889 ORTHO05D009987 1.6e-11 72.8 85 55.3
CsaV3_6G044960 Cucumis sativus L. HOM05D007889 ORTHO05D009987 1.0e-10 70.1 60 61.7
Eucgr.H04722 Eucalyptus grandis HOM05D007889 ORTHO05D009987 4.3e-09 64.7 97 46.4
vmacro08762 Vaccinium macrocarpon HOM05D007889 ORTHO05D009987 5.2e-07 57.8 50 64.0


User provided reference genes

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