Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s2587 Capsella rubella HOM05D003474 ORTHO05D003971 8.3e-103 377.1 198 100.0
AL8G42540 Arabidopsis lyrata HOM05D003474 ORTHO05D003971 2.4e-86 322.4 205 84.9
AT5G65030 Arabidopsis thaliana HOM05D003474 ORTHO05D003971 4.6e-85 318.2 205 83.9
BcaB02g09856 Brassica carinata HOM05D003474 ORTHO05D003971 6.6e-76 287.7 203 77.8
Thhalv10005637m.g Eutrema salsugineum HOM05D003474 ORTHO05D003971 1.5e-75 286.6 201 78.6
BcaC01g02734 Brassica carinata HOM05D003474 ORTHO05D003971 1.9e-75 286.2 202 76.7
C03p61160 Brassica napus HOM05D003474 ORTHO05D003971 1.9e-75 286.2 202 76.7
BolC3t18376H Brassica oleracea HOM05D003474 ORTHO05D003971 1.9e-75 286.2 202 76.7
CARHR293740 Cardamine hirsuta HOM05D003474 ORTHO05D003971 3.3e-75 285.4 202 78.7
BraA06t26118Z Brassica rapa HOM05D003474 ORTHO05D003971 5.6e-75 284.6 203 76.4
Sp2g28110 Schrenkiella parvula HOM05D003474 ORTHO05D003971 2.1e-74 282.7 202 76.7
A06p31850 Brassica napus HOM05D003474 ORTHO05D003971 1.5e-59 233.4 172 73.3
AL6G20700 Arabidopsis lyrata HOM05D003474 ORTHO05D003971 8.4e-55 217.6 197 61.4
CARHR203080 Cardamine hirsuta HOM05D003474 ORTHO05D003971 2.5e-54 216.1 192 62.5
Thhalv10014734m.g Eutrema salsugineum HOM05D003474 ORTHO05D003971 2.3e-52 209.5 197 59.4
Carub.0006s0867 Capsella rubella HOM05D003474 ORTHO05D003971 5.1e-52 208.4 193 61.1
BcaB08g37131 Brassica carinata HOM05D003474 ORTHO05D003971 1.1e-51 207.2 201 60.2
Sp6g33190 Schrenkiella parvula HOM05D003474 ORTHO05D003971 1.1e-51 207.2 202 60.9
AT5G10210 Arabidopsis thaliana HOM05D003474 ORTHO05D003971 1.9e-51 206.5 199 58.3
BraA10t44786Z Brassica rapa HOM05D003474 ORTHO05D003971 2.8e-50 202.6 201 57.2
A10p27350 Brassica napus HOM05D003474 ORTHO05D003971 4.8e-50 201.8 201 57.7
BcaC04g19322 Brassica carinata HOM05D003474 ORTHO05D003971 1.1e-49 200.7 201 57.7
C09p67210 Brassica napus HOM05D003474 ORTHO05D003971 1.1e-49 200.7 201 57.7
BolC9t59492H Brassica oleracea HOM05D003474 ORTHO05D003971 1.5e-48 196.8 194 57.7
THA.LOC104804926 Tarenaya hassleriana HOM05D003474 ORTHO05D003971 1.7e-47 193.4 188 55.9
Aa31LG3G16930 Aethionema arabicum HOM05D003474 ORTHO05D003971 4.6e-45 185.3 200 58.5
Ciclev10027277m.g Citrus clementina HOM05D003474 ORTHO05D003971 1.6e-37 160.2 199 47.7
Thecc.01G102400 Theobroma cacao HOM05D003474 ORTHO05D003971 1.3e-34 150.6 205 45.4
Gorai.007G239100 Gossypium raimondii HOM05D003474 ORTHO05D003971 6.3e-34 148.3 205 42.9
Duzib187G1721 Durio zibethinus HOM05D003474 ORTHO05D003971 7.0e-33 144.8 206 42.7
Peaxi162Scf00611g00012 Petunia axillaris HOM05D003474 ORTHO05D003971 7.0e-33 144.8 201 42.8
Gohir.D11G221900 Gossypium hirsutum HOM05D003474 ORTHO05D003971 1.2e-32 144.1 210 41.4
COL.COLO4_09957 Corchorus olitorius HOM05D003474 ORTHO05D003971 2.0e-32 143.3 216 44.9
Gohir.A11G201900 Gossypium hirsutum HOM05D003474 ORTHO05D003971 5.9e-32 141.7 210 41.4
QL06p049633 Quercus lobata HOM05D003474 ORTHO05D003971 5.9e-32 141.7 195 46.2
QL06p049587 Quercus lobata HOM05D003474 ORTHO05D003971 1.0e-31 141.0 193 43.5
QL06p049618 Quercus lobata HOM05D003474 ORTHO05D003971 2.9e-31 139.4 193 45.1
Cc07_g15300 Coffea canephora HOM05D003474 ORTHO05D003971 1.5e-30 137.1 190 42.6
Potri.007G092300 Populus trichocarpa HOM05D003474 ORTHO05D003971 4.2e-30 135.6 195 41.0
QL06p049593 Quercus lobata HOM05D003474 ORTHO05D003971 4.2e-30 135.6 193 42.5
Sabra07G0075900 Salix brachista HOM05D003474 ORTHO05D003971 7.2e-30 134.8 195 41.5
Sabra07G0076000 Salix brachista HOM05D003474 ORTHO05D003971 7.2e-30 134.8 195 41.5
Sabra07G0076200 Salix brachista HOM05D003474 ORTHO05D003971 9.4e-30 134.4 195 41.5
Sabra07G0076300 Salix brachista HOM05D003474 ORTHO05D003971 9.4e-30 134.4 195 41.5
Sabra07G0076100 Salix brachista HOM05D003474 ORTHO05D003971 2.1e-29 133.3 195 41.0
Potri.005G076100 Populus trichocarpa HOM05D003474 ORTHO05D003971 2.7e-29 132.9 195 42.1
Duzib147G1557 Durio zibethinus HOM05D003474 ORTHO05D003971 6.1e-29 131.7 199 40.7
Eucgr.I00429 Eucalyptus grandis HOM05D003474 ORTHO05D003971 1.0e-28 131.0 205 42.9
Eucgr.I00430 Eucalyptus grandis HOM05D003474 ORTHO05D003971 1.0e-28 131.0 205 42.9
Dinv13182 Davidia involucrata HOM05D003474 ORTHO05D003971 3.0e-28 129.4 173 42.8
Sed0016843 Sechium edule HOM05D003474 ORTHO05D003971 3.0e-28 129.4 194 41.8
Cfa002670 Carpinus fangiana HOM05D003474 ORTHO05D003971 4.0e-28 129.0 203 41.4
TWI74G0170 Tripterygium wilfordii HOM05D003474 ORTHO05D003971 4.0e-28 129.0 203 39.9
Cpa.g.sc213.15 Carica papaya HOM05D003474 ORTHO05D003971 5.2e-28 128.6 196 43.9
BcaB08g37129 Brassica carinata HOM05D003474 ORTHO05D003971 1.5e-27 127.1 126 56.3
Prupe.6G186100 Prunus persica HOM05D003474 ORTHO05D003971 1.5e-27 127.1 200 38.5
Oeu056606.1 Olea europaea HOM05D003474 ORTHO05D003971 2.0e-27 126.7 201 39.8
CAN.G441.1 Capsicum annuum HOM05D003474 ORTHO05D003971 4.4e-27 125.6 198 38.9
CiPaw.03G141500 Carya illinoinensis HOM05D003474 ORTHO05D003971 4.4e-27 125.6 210 38.6
RcHm_v2.0_Chr2g0114461 Rosa chinensis HOM05D003474 ORTHO05D003971 7.5e-27 124.8 207 38.6
ClCG01G018800 Citrullus lanatus HOM05D003474 ORTHO05D003971 9.7e-27 124.4 199 39.2
Oeu002403.1 Olea europaea HOM05D003474 ORTHO05D003971 9.7e-27 124.4 197 38.1
CsaV3_6G045460 Cucumis sativus L. HOM05D003474 ORTHO05D003971 1.3e-26 124.0 201 41.8
Manes.12G135500 Manihot esculenta HOM05D003474 ORTHO05D003971 1.7e-26 123.6 221 41.6
CSS0039995 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 2.8e-26 122.9 206 36.9
FvH4_1g20980 Fragaria vesca HOM05D003474 ORTHO05D003971 2.8e-26 122.9 207 38.2
Lj4P889T19 Lonicera japonica HOM05D003474 ORTHO05D003971 2.8e-26 122.9 196 40.3
FAN28G0803 Fragaria x ananassa HOM05D003474 ORTHO05D003971 6.3e-26 121.7 207 37.7
PGSC0003DMG400021798 Solanum tuberosum HOM05D003474 ORTHO05D003971 6.3e-26 121.7 203 38.9
FAN26G3130 Fragaria x ananassa HOM05D003474 ORTHO05D003971 8.2e-26 121.3 207 38.2
CSS0002095 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 1.1e-25 120.9 207 36.7
FAN19G2364 Fragaria x ananassa HOM05D003474 ORTHO05D003971 1.1e-25 120.9 207 39.1
Nitab4.5_0000104g0120 Nicotiana tabacum HOM05D003474 ORTHO05D003971 1.1e-25 120.9 156 43.6
CSS0044421 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 2.4e-25 119.8 207 37.7
PGSC0003DMG400001891 Solanum tuberosum HOM05D003474 ORTHO05D003971 3.1e-25 119.4 205 37.1
FAN23G2065 Fragaria x ananassa HOM05D003474 ORTHO05D003971 7.0e-25 118.2 207 37.2
Atru.chr4.70 Acer truncatum HOM05D003474 ORTHO05D003971 1.2e-24 117.5 231 37.7
CSS0038157 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 1.2e-24 117.5 199 38.2
Nn1g05334 Nelumbo nucifera HOM05D003474 ORTHO05D003971 1.6e-24 117.1 201 38.8
CSS0009549 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 2.0e-24 116.7 207 37.2
CSS0003854 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 2.7e-24 116.3 206 35.4
BcaC04g19323 Brassica carinata HOM05D003474 ORTHO05D003971 7.7e-24 114.8 88 62.5
CiPaw.04G099000 Carya illinoinensis HOM05D003474 ORTHO05D003971 7.7e-24 114.8 200 37.0
Nitab4.5_0000104g0070 Nicotiana tabacum HOM05D003474 ORTHO05D003971 1.7e-23 113.6 188 40.4
TAR381G0511 Trochodendron aralioides HOM05D003474 ORTHO05D003971 1.7e-23 113.6 204 37.3
Rhsim08G0010000 Rhododendron simsii HOM05D003474 ORTHO05D003971 2.2e-23 113.2 203 38.9
TAR625G0209 Trochodendron aralioides HOM05D003474 ORTHO05D003971 2.2e-23 113.2 175 38.3
AUR62002014 Chenopodium quinoa HOM05D003474 ORTHO05D003971 2.9e-23 112.8 214 36.9
RcHm_v2.0_Chr2g0114471 Rosa chinensis HOM05D003474 ORTHO05D003971 2.9e-23 112.8 211 36.0
Ah.02g122460 Amaranthus hybridus HOM05D003474 ORTHO05D003971 5.0e-23 112.1 208 35.1
TAR625G1533 Trochodendron aralioides HOM05D003474 ORTHO05D003971 5.0e-23 112.1 201 37.8
Atru.chr4.72 Acer truncatum HOM05D003474 ORTHO05D003971 6.5e-23 111.7 232 37.1
Atru.chr4.73 Acer truncatum HOM05D003474 ORTHO05D003971 6.5e-23 111.7 232 37.1
Nn5g30135 Nelumbo nucifera HOM05D003474 ORTHO05D003971 8.5e-23 111.3 196 37.2
Nitab4.5_0016805g0010 Nicotiana tabacum HOM05D003474 ORTHO05D003971 1.1e-22 110.9 181 40.3
AUR62003788 Chenopodium quinoa HOM05D003474 ORTHO05D003971 1.5e-22 110.5 213 35.7
SalBow3G2422 Salvia bowleyana HOM05D003474 ORTHO05D003971 1.9e-22 110.2 191 36.1
Hma1.2p1_0047F.1_g027910 Hydrangea macrophylla HOM05D003474 ORTHO05D003971 7.2e-22 108.2 199 37.2
Cfa002671 Carpinus fangiana HOM05D003474 ORTHO05D003971 9.4e-22 107.8 195 37.9
Haze_24940 Corylus avellana HOM05D003474 ORTHO05D003971 1.6e-21 107.1 173 38.2
Lsat_1_v5_gn_5_43320 Lactuca sativa HOM05D003474 ORTHO05D003971 3.6e-21 105.9 200 36.0
EL10Ac6g15097 Beta vulgaris HOM05D003474 ORTHO05D003971 8.0e-21 104.8 208 34.6
Lsat_1_v5_gn_5_43140 Lactuca sativa HOM05D003474 ORTHO05D003971 8.0e-21 104.8 200 36.0
Lsat_1_v5_gn_5_43240 Lactuca sativa HOM05D003474 ORTHO05D003971 8.0e-21 104.8 200 36.0
ECA246G4897 Erigeron canadensis HOM05D003474 ORTHO05D003971 1.0e-20 104.4 197 33.0
Actinidia28867 Actinidia chinensis HOM05D003474 ORTHO05D003971 4.0e-20 102.4 171 40.4
Lsat_1_v5_gn_5_43280 Lactuca sativa HOM05D003474 ORTHO05D003971 4.0e-20 102.4 196 34.7
Lsat_1_v5_gn_5_43380 Lactuca sativa HOM05D003474 ORTHO05D003971 4.0e-20 102.4 201 37.3
SalBow5G3228 Salvia bowleyana HOM05D003474 ORTHO05D003971 4.0e-20 102.4 186 37.1
Sopen03g021520 Solanum pennellii HOM05D003474 ORTHO05D003971 4.0e-20 102.4 202 36.1
Aqoxy6G00810 Aquilegia oxysepala HOM05D003474 ORTHO05D003971 5.2e-20 102.1 197 37.1
Solyc03g078620.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 5.2e-20 102.1 205 36.1
SalBow5G0419 Salvia bowleyana HOM05D003474 ORTHO05D003971 6.8e-20 101.7 186 36.6
SalBow5G4466 Salvia bowleyana HOM05D003474 ORTHO05D003971 6.8e-20 101.7 186 36.6
Psat5g089920 Pisum sativum HOM05D003474 ORTHO05D003971 1.5e-19 100.5 200 34.5
Ca_16531_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 7.5e-19 98.2 189 36.0
Glyma.11G239900 Glycine max HOM05D003474 ORTHO05D003971 7.5e-19 98.2 128 42.2
Ca_16530_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 9.8e-19 97.8 190 35.3
Ca_16533_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 1.3e-18 97.4 189 35.4
Sabra05G0062700 Salix brachista HOM05D003474 ORTHO05D003971 1.3e-18 97.4 166 35.5
Ca_16532_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 1.7e-18 97.1 190 35.3
PSO541G6092 Papaver somniferum HOM05D003474 ORTHO05D003971 1.7e-18 97.1 197 34.0
PSO781G0331 Papaver somniferum HOM05D003474 ORTHO05D003971 2.8e-18 96.3 194 33.5
Glyma.18G017500 Glycine max HOM05D003474 ORTHO05D003971 3.7e-18 95.9 202 33.7
DCAR_003501 Daucus carota HOM05D003474 ORTHO05D003971 8.3e-18 94.7 188 34.6
MBI02_g08731_MAGBIO Magnolia biondii HOM05D003474 ORTHO05D003971 8.3e-18 94.7 189 30.7
TPR.G17834 Trifolium pratense HOM05D003474 ORTHO05D003971 8.3e-18 94.7 203 32.5
Lalb_Chr08g0231081 Lupinus albus HOM05D003474 ORTHO05D003971 1.1e-17 94.4 192 33.9
PSO781G0184 Papaver somniferum HOM05D003474 ORTHO05D003971 1.4e-17 94.0 197 33.0
TPR.G17845 Trifolium pratense HOM05D003474 ORTHO05D003971 1.8e-17 93.6 203 32.5
TPR.G17848 Trifolium pratense HOM05D003474 ORTHO05D003971 1.8e-17 93.6 203 32.5
PGR004G1795 Punica granatum HOM05D003474 ORTHO05D003971 2.4e-17 93.2 215 34.4
Lalb_Chr23g0277351 Lupinus albus HOM05D003474 ORTHO05D003971 3.1e-17 92.8 200 31.5
Psat5g089800 Pisum sativum HOM05D003474 ORTHO05D003971 3.1e-17 92.8 137 38.7
Lsat_1_v5_gn_5_43760 Lactuca sativa HOM05D003474 ORTHO05D003971 4.1e-17 92.4 210 34.3
DCAR_003502 Daucus carota HOM05D003474 ORTHO05D003971 7.0e-17 91.7 197 34.5
Migut.H02362 Erythranthe guttata HOM05D003474 ORTHO05D003971 7.0e-17 91.7 205 33.7
VMungo1383G0909 Vigna mungo HOM05D003474 ORTHO05D003971 7.0e-17 91.7 202 30.2
Lj6g0005521 Lotus japonicus HOM05D003474 ORTHO05D003971 9.1e-17 91.3 207 33.3
Aqoxy6G00809 Aquilegia oxysepala HOM05D003474 ORTHO05D003971 1.2e-16 90.9 177 35.0
QL06p049605 Quercus lobata HOM05D003474 ORTHO05D003971 1.2e-16 90.9 105 46.7
PSO781G0183 Papaver somniferum HOM05D003474 ORTHO05D003971 2.0e-16 90.1 197 33.0
Medtr3g087278 Medicago truncatula HOM05D003474 ORTHO05D003971 2.7e-16 89.7 200 32.5
Psat5g089880 Pisum sativum HOM05D003474 ORTHO05D003971 2.7e-16 89.7 201 32.3
Lj6g0012852 Lotus japonicus HOM05D003474 ORTHO05D003971 3.5e-16 89.4 208 33.2
Medtr3g087275 Medicago truncatula HOM05D003474 ORTHO05D003971 3.5e-16 89.4 188 32.4
TPR.G17847 Trifolium pratense HOM05D003474 ORTHO05D003971 4.5e-16 89.0 203 32.0
Psat5g089840 Pisum sativum HOM05D003474 ORTHO05D003971 7.7e-16 88.2 201 31.8
Migut.L00118 Erythranthe guttata HOM05D003474 ORTHO05D003971 1.0e-15 87.8 194 34.0
Medtr3g087270 Medicago truncatula HOM05D003474 ORTHO05D003971 1.0e-15 87.8 202 30.2
Medtr3g087280 Medicago truncatula HOM05D003474 ORTHO05D003971 1.3e-15 87.4 202 30.7
Psat5g089720 Pisum sativum HOM05D003474 ORTHO05D003971 1.7e-15 87.0 201 31.8
CANSAT01G1468 Cannabis sativa HOM05D003474 ORTHO05D003971 2.2e-15 86.7 205 33.2
Lalb_Chr08g0231071 Lupinus albus HOM05D003474 ORTHO05D003971 2.9e-15 86.3 201 32.3
Lj6g0019645 Lotus japonicus HOM05D003474 ORTHO05D003971 5.0e-15 85.5 204 32.8
SalBow5G5729 Salvia bowleyana HOM05D003474 ORTHO05D003971 1.5e-14 84.0 151 35.8
PSO781G0304 Papaver somniferum HOM05D003474 ORTHO05D003971 1.9e-14 83.6 199 30.7
CANSAT01G0924 Cannabis sativa HOM05D003474 ORTHO05D003971 4.2e-14 82.4 214 31.3
Sc16g0005640 Simmondsia chinensis HOM05D003474 ORTHO05D003971 5.5e-14 82.0 192 33.9
DCAR_003503 Daucus carota HOM05D003474 ORTHO05D003971 7.2e-14 81.6 169 32.5
Peaxi162Scf00212g00111 Petunia axillaris HOM05D003474 ORTHO05D003971 7.2e-14 81.6 87 46.0
CANSAT73G0001 Cannabis sativa HOM05D003474 ORTHO05D003971 1.2e-13 80.9 221 33.9
Medtr3g087330 Medicago truncatula HOM05D003474 ORTHO05D003971 1.2e-13 80.9 200 32.0
TPR.G17829 Trifolium pratense HOM05D003474 ORTHO05D003971 3.6e-13 79.3 200 30.0
Medtr3g087325 Medicago truncatula HOM05D003474 ORTHO05D003971 6.1e-13 78.6 189 31.7
Phvul.001G251900 Phaseolus vulgaris HOM05D003474 ORTHO05D003971 8.0e-13 78.2 163 32.5
Sabra07G0076400 Salix brachista HOM05D003474 ORTHO05D003971 1.0e-12 77.8 128 39.1
TPR.G17835 Trifolium pratense HOM05D003474 ORTHO05D003971 1.8e-12 77.0 200 30.0
SalBow5G1505 Salvia bowleyana HOM05D003474 ORTHO05D003971 3.0e-12 76.3 120 34.2
SalBow5G3492 Salvia bowleyana HOM05D003474 ORTHO05D003971 6.8e-12 75.1 134 35.8
TPR.G17838 Trifolium pratense HOM05D003474 ORTHO05D003971 2.2e-10 70.1 86 41.9
DCAR_003504 Daucus carota HOM05D003474 ORTHO05D003971 3.7e-10 69.3 158 32.3
MELO3C007759.2 Cucumis melo HOM05D003474 ORTHO05D003971 8.3e-10 68.2 130 39.2
Nitab4.5_0006517g0020 Nicotiana tabacum HOM05D003474 ORTHO05D003971 2.4e-09 66.6 137 38.0
PGSC0003DMG400001890 Solanum tuberosum HOM05D003474 ORTHO05D003971 2.4e-09 66.6 136 36.0
Peaxi162Scf00212g00105 Petunia axillaris HOM05D003474 ORTHO05D003971 4.1e-09 65.9 133 39.8
Sopen04g025010 Solanum pennellii HOM05D003474 ORTHO05D003971 5.4e-09 65.5 139 34.5
Solyc04g055140.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 9.2e-09 64.7 136 33.8
ATR0753G036 Amborella trichopoda HOM05D003474 ORTHO05D003971 2.0e-08 63.5 199 33.2
Sopen04g025000 Solanum pennellii HOM05D003474 ORTHO05D003971 5.9e-08 62.0 137 35.0
SEGI_26050 Sequoiadendron giganteum HOM05D003474 ORTHO05D003971 7.7e-08 61.6 138 32.6
Solyc04g055150.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 7.7e-08 61.6 136 33.8
Solyc04g055130.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 3.8e-07 59.3 139 33.1
SEGI_16345 Sequoiadendron giganteum HOM05D000003 ORTHO05D000004 1.9e-06 57.0 165 29.7
Medtr3g087300 Medicago truncatula HOM05D003474 ORTHO05D003971 2.5e-06 56.6 124 30.6


User provided reference genes

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