Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s2566 Capsella rubella HOM05D006130 ORTHO05D007491 2.3e-194 682.2 372 100.0
AL8G42310 Arabidopsis lyrata HOM05D006130 ORTHO05D007491 1.3e-168 596.7 381 83.5
Sp2g27910 Schrenkiella parvula HOM05D006130 ORTHO05D007491 4.1e-159 565.1 382 78.0
Thhalv10004393m.g Eutrema salsugineum HOM05D006130 ORTHO05D007491 4.2e-156 555.1 382 73.8
CARHR278840 Cardamine hirsuta HOM05D006130 ORTHO05D007491 9.3e-156 553.9 377 80.1
A06p31630 Brassica napus HOM05D006130 ORTHO05D007491 1.5e-150 536.6 380 78.4
BolC3t18393H Brassica oleracea HOM05D006130 ORTHO05D007491 5.9e-150 534.6 375 79.7
C03p61330 Brassica napus HOM05D006130 ORTHO05D007491 5.0e-149 531.6 379 70.2
BcaB02g09834 Brassica carinata HOM05D006130 ORTHO05D007491 9.7e-145 517.3 382 75.9
BraA06t26099Z Brassica rapa HOM05D006130 ORTHO05D007491 6.9e-143 511.1 374 76.2
BcaC01g02716 Brassica carinata HOM05D006130 ORTHO05D007491 2.7e-139 499.2 366 68.6
THA.LOC104818474 Tarenaya hassleriana HOM05D006130 ORTHO05D007491 1.0e-122 444.1 390 56.9
Aa31LG1G17100 Aethionema arabicum HOM05D006130 ORTHO05D007491 2.6e-121 439.5 357 64.7
AT5G64830 Arabidopsis thaliana HOM05D006130 ORTHO05D007491 1.0e-98 364.4 282 78.7
Cpa.g.sc191.11 Carica papaya HOM05D006130 ORTHO05D007491 9.8e-97 357.8 375 49.6
QL06p031976 Quercus lobata HOM05D006130 ORTHO05D007491 3.3e-92 342.8 373 48.8
Haze_25050 Corylus avellana HOM05D006130 ORTHO05D007491 1.4e-90 337.4 386 48.2
Thecc.01G113900 Theobroma cacao HOM05D006130 ORTHO05D007491 1.8e-90 337.0 376 47.9
Gorai.007G244700 Gossypium raimondii HOM05D006130 ORTHO05D007491 2.3e-90 336.7 383 47.0
FAN23G0816 Fragaria x ananassa HOM05D006130 ORTHO05D007491 4.0e-90 335.9 369 46.1
Gohir.A11G197900 Gossypium hirsutum HOM05D006130 ORTHO05D007491 4.0e-90 335.9 383 47.3
FAN19G1269 Fragaria x ananassa HOM05D006130 ORTHO05D007491 1.2e-89 334.3 369 46.1
Dinv19481 Davidia involucrata HOM05D006130 ORTHO05D007491 1.5e-89 334.0 373 47.5
Gohir.D11G231600 Gossypium hirsutum HOM05D006130 ORTHO05D007491 2.0e-89 333.6 383 47.3
MD15G1331600 Malus domestica HOM05D006130 ORTHO05D007491 2.0e-89 333.6 364 47.0
Ciclev10026167m.g Citrus clementina HOM05D006130 ORTHO05D007491 7.5e-89 331.6 370 50.5
PGR102G0730 Punica granatum HOM05D006130 ORTHO05D007491 1.7e-88 330.5 374 47.9
Cfa002758 Carpinus fangiana HOM05D006130 ORTHO05D007491 2.2e-88 330.1 387 47.3
Duzib264G0573 Durio zibethinus HOM05D006130 ORTHO05D007491 2.2e-88 330.1 380 47.1
CANSAT80G2857 Cannabis sativa HOM05D006130 ORTHO05D007491 1.1e-87 327.8 370 47.6
Manes.12G143200 Manihot esculenta HOM05D006130 ORTHO05D007491 1.1e-87 327.8 377 46.4
RcHm_v2.0_Chr2g0117041 Rosa chinensis HOM05D006130 ORTHO05D007491 1.1e-87 327.8 369 45.0
TWI74G0604 Tripterygium wilfordii HOM05D006130 ORTHO05D007491 1.4e-87 327.4 379 46.4
Atru.chr4.339 Acer truncatum HOM05D006130 ORTHO05D007491 1.2e-86 324.3 377 47.5
Sabra07G0067600 Salix brachista HOM05D006130 ORTHO05D007491 1.2e-86 324.3 378 46.0
CiPaw.04G091300 Carya illinoinensis HOM05D006130 ORTHO05D007491 1.6e-86 323.9 377 46.2
Dinv42687 Davidia involucrata HOM05D006130 ORTHO05D007491 2.1e-86 323.6 374 45.7
Potri.007G080500 Populus trichocarpa HOM05D006130 ORTHO05D007491 6.0e-86 322.0 368 46.7
Prupe.6G171600 Prunus persica HOM05D006130 ORTHO05D007491 2.3e-85 320.1 367 46.0
Lj2C566T4 Lonicera japonica HOM05D006130 ORTHO05D007491 3.3e-84 316.2 369 46.6
CAN.G347.1 Capsicum annuum HOM05D006130 ORTHO05D007491 4.3e-84 315.8 370 46.5
FAN26G2148 Fragaria x ananassa HOM05D006130 ORTHO05D007491 9.5e-84 314.7 363 44.9
Duzib147G1554 Durio zibethinus HOM05D006130 ORTHO05D007491 1.2e-83 314.3 343 49.3
PGSC0003DMG400031208 Solanum tuberosum HOM05D006130 ORTHO05D007491 2.1e-83 313.5 374 50.3
Solyc04g051780.3 Solanum lycopersicum HOM05D006130 ORTHO05D007491 3.6e-83 312.8 372 48.4
Cc07_g16320 Coffea canephora HOM05D006130 ORTHO05D007491 1.1e-82 311.2 380 44.7
Sopen04g023130 Solanum pennellii HOM05D006130 ORTHO05D007491 1.4e-82 310.8 363 49.6
Nitab4.5_0015691g0010 Nicotiana tabacum HOM05D006130 ORTHO05D007491 8.9e-82 308.1 372 45.2
Sed0017229 Sechium edule HOM05D006130 ORTHO05D007491 8.9e-82 308.1 373 46.1
Eucgr.H04843 Eucalyptus grandis HOM05D006130 ORTHO05D007491 1.2e-81 307.8 377 44.3
MBI05_g29098_MAGBIO Magnolia biondii HOM05D006130 ORTHO05D007491 1.2e-81 307.8 375 41.6
Rhsim08G0006100 Rhododendron simsii HOM05D006130 ORTHO05D007491 1.2e-81 307.8 370 44.1
MELO3C025043.2 Cucumis melo HOM05D006130 ORTHO05D007491 2.6e-81 306.6 369 44.2
CsaV3_6G002440 Cucumis sativus L. HOM05D006130 ORTHO05D007491 9.9e-81 304.7 369 43.9
Nn5g28889 Nelumbo nucifera HOM05D006130 ORTHO05D007491 9.9e-81 304.7 387 44.2
Nitab4.5_0004840g0040 Nicotiana tabacum HOM05D006130 ORTHO05D007491 2.2e-80 303.5 369 46.3
TPR.G23729 Trifolium pratense HOM05D006130 ORTHO05D007491 1.4e-79 300.8 374 48.1
Lalb_Chr11g0068091 Lupinus albus HOM05D006130 ORTHO05D007491 5.4e-79 298.9 372 42.7
PSO170G1695 Papaver somniferum HOM05D006130 ORTHO05D007491 5.4e-79 298.9 374 44.4
Oeu028522.1 Olea europaea HOM05D006130 ORTHO05D007491 3.5e-78 296.2 364 42.0
EL10Ac6g14758 Beta vulgaris HOM05D006130 ORTHO05D007491 6.0e-78 295.4 373 42.6
ClCG11G005560 Citrullus lanatus HOM05D006130 ORTHO05D007491 6.0e-78 295.4 370 44.1
PSO210G3121 Papaver somniferum HOM05D006130 ORTHO05D007491 7.8e-78 295.0 374 41.7
GSVIVG01022236001 Vitis vinifera HOM05D006130 ORTHO05D007491 2.3e-77 293.5 379 41.4
ECA238G3253 Erigeron canadensis HOM05D006130 ORTHO05D007491 1.1e-76 291.2 363 42.7
Lj1g0022742 Lotus japonicus HOM05D006130 ORTHO05D007491 1.1e-76 291.2 377 49.6
Peaxi162Scf00106g00208 Petunia axillaris HOM05D006130 ORTHO05D007491 2.5e-76 290.0 373 44.5
Ca_16897_v3 Cicer arietinum L. HOM05D006130 ORTHO05D007491 4.3e-76 289.3 377 45.4
HPP92_027147 Vanilla planifolia HOM05D006130 ORTHO05D007491 5.6e-76 288.9 362 42.5
Psat5g066000 Pisum sativum HOM05D006130 ORTHO05D007491 2.8e-75 286.6 383 45.4
HPP92_016462 Vanilla planifolia HOM05D006130 ORTHO05D007491 2.8e-75 286.6 369 41.2
MSTRG.15753 Avicennia marina HOM05D006130 ORTHO05D007491 6.2e-75 285.4 361 42.9
AUR62016283 Chenopodium quinoa HOM05D006130 ORTHO05D007491 6.2e-75 285.4 374 43.3
Glyma.04G218800 Glycine max HOM05D006130 ORTHO05D007491 6.2e-75 285.4 374 42.0
Lsat_1_v5_gn_2_67140 Lactuca sativa HOM05D006130 ORTHO05D007491 4.0e-74 282.7 362 43.1
Phvul.009G139000 Phaseolus vulgaris HOM05D006130 ORTHO05D007491 4.0e-74 282.7 367 43.3
Lsat_1_v5_gn_2_93681 Lactuca sativa HOM05D006130 ORTHO05D007491 1.2e-73 281.2 360 42.2
Aqoxy7G04042 Aquilegia oxysepala HOM05D006130 ORTHO05D007491 1.5e-73 280.8 381 41.2
arahy.Tifrunner.gnm1.ann1.JIC903 Arachis hypogaea HOM05D006130 ORTHO05D007491 3.4e-73 279.6 374 43.0
DCAR_001374 Daucus carota HOM05D006130 ORTHO05D007491 3.4e-73 279.6 413 38.5
vmacro18637 Vaccinium macrocarpon HOM05D006130 ORTHO05D007491 3.4e-73 279.6 350 45.1
Eucgr.H04852 Eucalyptus grandis HOM05D006130 ORTHO05D007491 4.4e-73 279.3 374 41.7
Medtr3g095020 Medicago truncatula HOM05D006130 ORTHO05D007491 7.6e-73 278.5 373 44.8
VMungo1309G1738 Vigna mungo HOM05D006130 ORTHO05D007491 7.6e-73 278.5 344 45.6
AUR62003302 Chenopodium quinoa HOM05D006130 ORTHO05D007491 2.9e-72 276.6 378 42.3
ATR0665G503 Amborella trichopoda HOM05D006130 ORTHO05D007491 3.2e-71 273.1 380 38.9
HanXRQChr14g0445741 Helianthus annuus HOM05D006130 ORTHO05D007491 3.2e-71 273.1 360 41.7
Migut.L00069 Erythranthe guttata HOM05D006130 ORTHO05D007491 4.2e-71 272.7 372 42.2
arahy.Tifrunner.gnm1.ann1.S5QZ0Z Arachis hypogaea HOM05D006130 ORTHO05D007491 6.0e-70 268.9 379 42.5
SEGI_25559 Sequoiadendron giganteum HOM05D006130 ORTHO05D007491 6.6e-69 265.4 392 39.0
SalBow5G2487 Salvia bowleyana HOM05D006130 ORTHO05D007491 1.5e-68 264.2 368 42.7
CDE09G1360 Ceratophyllum demersum HOM05D006130 ORTHO05D007491 9.6e-68 261.5 376 38.8
Eucgr.H04859 Eucalyptus grandis HOM05D006130 ORTHO05D007491 4.8e-67 259.2 377 40.1
Hund03536 Selenicereus undatus HOM05D006130 ORTHO05D007491 2.4e-66 256.9 389 40.4
Os04g0640800 Oryza sativa ssp. japonica HOM05D006130 ORTHO05D007491 1.2e-65 254.6 368 40.8
SGA_v2.0_scaffold47G17703 Striga asiatica HOM05D006130 ORTHO05D007491 2.0e-65 253.8 376 40.7
FvH4_1g22740 Fragaria vesca HOM05D006130 ORTHO05D007491 4.5e-65 252.7 310 42.9
Eucgr.H04856 Eucalyptus grandis HOM05D006130 ORTHO05D007491 2.2e-64 250.4 372 41.1
SMO358G0378 Selaginella moellendorffii HOM05D006130 ORTHO05D007491 1.4e-63 247.7 398 35.4
Zm00001eb431860 Zea mays HOM05D006130 ORTHO05D007491 7.9e-62 241.9 366 38.5
Mapoly0014s0114 Marchantia polymorpha HOM05D006130 ORTHO05D007491 2.4e-58 230.3 391 35.5
GSVIVG01022231001 Vitis vinifera HOM05D006130 ORTHO05D007491 2.4e-58 230.3 364 37.1
Ah.14g080600 Amaranthus hybridus HOM05D006130 ORTHO05D007491 4.0e-58 229.6 348 40.5
Eucgr.H04846 Eucalyptus grandis HOM05D006130 ORTHO05D007491 1.5e-57 227.6 336 41.4
unitig_62.g23431 Utricularia gibba HOM05D006130 ORTHO05D007491 8.4e-56 221.9 361 39.1
Pp3c16_16240 Physcomitrium patens HOM05D006130 ORTHO05D007491 7.1e-55 218.8 382 38.2
Ah.03g141370 Amaranthus hybridus HOM05D006130 ORTHO05D007491 1.9e-52 210.7 289 43.9
Hma1.2p1_0375F.1_g138770 Hydrangea macrophylla HOM05D006130 ORTHO05D007491 3.3e-52 209.9 308 39.3
TAR628G0645 Trochodendron aralioides HOM05D006130 ORTHO05D007491 8.2e-51 205.3 279 42.7
COL.COLO4_11003 Corchorus olitorius HOM05D006130 ORTHO05D007491 1.1e-50 204.9 369 34.4
Actinidia12211 Actinidia chinensis HOM05D006130 ORTHO05D007491 1.2e-49 201.4 262 43.9
Sc03g0004370 Simmondsia chinensis HOM05D006130 ORTHO05D007491 4.9e-48 196.1 271 42.8
Eucgr.H04861 Eucalyptus grandis HOM05D006130 ORTHO05D007491 2.5e-47 193.7 189 52.9
Glyma.06G147000 Glycine max HOM05D006130 ORTHO05D007491 3.9e-45 186.4 158 57.0
CSS0050489 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.9e-44 184.1 173 53.2
CBR_g30690 Chara braunii HOM05D006130 ORTHO05D007491 1.4e-39 167.9 476 29.2
AagrBONN_evm.TU.Sc2ySwM_228.1847 Anthoceros agrestis HOM05D006130 ORTHO05D007491 5.3e-26 122.9 146 41.8
MCO11G927 Micromonas commoda HOM05D006130 ORTHO05D007491 4.2e-23 113.2 430 29.5
SGA_v2.0_scaffold34G13625 Striga asiatica HOM05D006130 ORTHO05D007491 1.0e-21 108.6 87 55.2
AagrBONN_evm.TU.Sc2ySwM_228.1848 Anthoceros agrestis HOM05D006130 ORTHO05D007491 8.2e-19 99.0 84 54.8
Actinidia35264 Actinidia chinensis HOM05D006130 ORTHO05D007491 2.2e-16 90.9 87 54.0
Aqoxy2G02861 Aquilegia oxysepala HOM05D005189 ORTHO05D006093 2.3e-13 80.9 350 24.3
AT4G02220 Arabidopsis thaliana HOM05D005189 ORTHO05D006093 5.7e-12 76.3 339 25.4
SGA_v2.0_scaffold32G12965 Striga asiatica HOM05D006130 ORTHO05D007491 5.7e-12 76.3 80 52.5
AL6G50910 Arabidopsis lyrata HOM05D005189 ORTHO05D006093 1.3e-11 75.1 339 25.4
Cre14.g608500 Chlamydomonas reinhardtii HOM05D006130 ORTHO05D007491 3.7e-11 73.6 121 32.2
FAN21G1757 Fragaria x ananassa HOM05D005189 ORTHO05D006093 1.1e-10 72.0 342 22.8
Aa31LG5G1890 Aethionema arabicum HOM05D005189 ORTHO05D006093 2.4e-10 70.9 350 22.0
Aqoxy22s002 Aquilegia oxysepala HOM05D005189 ORTHO05D006093 2.4e-10 70.9 167 30.5
CARHR250440 Cardamine hirsuta HOM05D005189 ORTHO05D006093 2.4e-10 70.9 339 24.8
Sp6g02120 Schrenkiella parvula HOM05D005189 ORTHO05D006093 3.1e-10 70.5 340 24.7
FAN16G0469 Fragaria x ananassa HOM05D005189 ORTHO05D006093 7.0e-10 69.3 341 22.6
RcHm_v2.0_Chr5g0024021 Rosa chinensis HOM05D005189 ORTHO05D006093 1.6e-09 68.2 345 23.2
Sed0013075 Sechium edule HOM05D005189 ORTHO05D006093 1.6e-09 68.2 349 21.8
PSO765G0055 Papaver somniferum HOM05D005189 ORTHO05D006093 3.5e-09 67.0 354 22.9
MBI19_g05150_MAGBIO Magnolia biondii HOM05D005189 ORTHO05D006093 4.5e-09 66.6 356 23.6
Thhalv10028689m.g Eutrema salsugineum HOM05D005189 ORTHO05D006093 5.9e-09 66.2 337 23.7
FvH4_3g14570 Fragaria vesca HOM05D005189 ORTHO05D006093 5.9e-09 66.2 345 22.9
CSS0031632 Camellia sinensis var. sinensis HOM05D005189 ORTHO05D006093 7.7e-09 65.9 350 23.7
CSS0046497 Camellia sinensis var. sinensis HOM05D005189 ORTHO05D006093 1.0e-08 65.5 343 23.3
Migut.D00121 Erythranthe guttata HOM05D005189 ORTHO05D006093 1.0e-08 65.5 359 22.3
Potri.002G201200 Populus trichocarpa HOM05D005189 ORTHO05D006093 1.0e-08 65.5 346 22.0
TWI23G0603 Tripterygium wilfordii HOM05D005189 ORTHO05D006093 1.3e-08 65.1 360 21.4
TAR365G0047 Trochodendron aralioides HOM05D005189 ORTHO05D006093 1.3e-08 65.1 101 31.7
Ciclev10020359m.g Citrus clementina HOM05D005189 ORTHO05D006093 1.7e-08 64.7 341 24.0
DCAR_006919 Daucus carota HOM05D005189 ORTHO05D006093 2.9e-08 63.9 346 23.4
ClCG03G014110 Citrullus lanatus HOM05D005189 ORTHO05D006093 3.8e-08 63.5 342 22.5
DCAR_005781 Daucus carota HOM05D005189 ORTHO05D006093 3.8e-08 63.5 346 23.7
HanXRQChr08g0218711 Helianthus annuus HOM05D006130 ORTHO05D007491 3.8e-08 63.5 49 51.0
Manes.03G058600 Manihot esculenta HOM05D005189 ORTHO05D006093 3.8e-08 63.5 353 23.2
BcaB01g02068 Brassica carinata HOM05D005189 ORTHO05D006093 5.0e-08 63.2 339 22.7
Carub.0006s3494 Capsella rubella HOM05D005189 ORTHO05D006093 5.0e-08 63.2 339 23.6
MELO3C015632.2 Cucumis melo HOM05D005189 ORTHO05D006093 5.0e-08 63.2 343 23.3
unitig_22.g5230 Utricularia gibba HOM05D005189 ORTHO05D006093 6.5e-08 62.8 338 24.6
Sabra02G0157700 Salix brachista HOM05D005189 ORTHO05D006093 1.1e-07 62.0 101 32.7
AUR62024701 Chenopodium quinoa HOM05D005189 ORTHO05D006093 1.5e-07 61.6 338 22.2
Eucgr.D00338 Eucalyptus grandis HOM05D005189 ORTHO05D006093 1.5e-07 61.6 355 29.9
CiPaw.01G112900 Carya illinoinensis HOM05D005189 ORTHO05D006093 1.9e-07 61.2 116 29.3
Dinv33081 Davidia involucrata HOM05D005189 ORTHO05D006093 1.9e-07 61.2 354 22.3
Rhsim13G0007900 Rhododendron simsii HOM05D005189 ORTHO05D006093 1.9e-07 61.2 354 25.4
Nn8g40249 Nelumbo nucifera HOM05D005189 ORTHO05D006093 2.5e-07 60.8 96 29.2
Pp3c22_7380 Physcomitrium patens HOM05D005189 ORTHO05D006093 2.5e-07 60.8 169 27.8
MSTRG.13027 Avicennia marina HOM05D005189 ORTHO05D006093 3.2e-07 60.5 342 20.2
HanXRQChr04g0111211 Helianthus annuus HOM05D005189 ORTHO05D006093 3.2e-07 60.5 132 29.5
CBR_g22284 Chara braunii HOM05D005189 ORTHO05D006093 4.2e-07 60.1 103 32.0
CsaV3_1G042140 Cucumis sativus L. HOM05D005189 ORTHO05D006093 4.2e-07 60.1 343 22.7
Atru.chr5.1082 Acer truncatum HOM05D005189 ORTHO05D006093 5.5e-07 59.7 352 22.4
Duzib128G0399 Durio zibethinus HOM05D005189 ORTHO05D006093 5.5e-07 59.7 341 21.7
Cc01_g21150 Coffea canephora HOM05D005189 ORTHO05D006093 7.2e-07 59.3 173 28.9
Oeu008336.1 Olea europaea HOM05D005189 ORTHO05D006093 7.2e-07 59.3 341 21.4
FAN11G2688 Fragaria x ananassa HOM05D005189 ORTHO05D006093 9.4e-07 58.9 149 27.5
Lj5C676G0 Lonicera japonica HOM05D005189 ORTHO05D006093 9.4e-07 58.9 146 27.4
Dinv10045 Davidia involucrata HOM05D003197 ORTHO05D006093 1.2e-06 58.5 351 22.5
Manes.05G000401 Manihot esculenta HOM05D005189 ORTHO05D006093 2.7e-06 57.4 353 22.4
QL06p006883 Quercus lobata HOM05D005189 ORTHO05D006093 4.7e-06 56.6 156 28.2
Os03g0300200 Oryza sativa ssp. japonica HOM05D005189 ORTHO05D006093 6.1e-06 56.2 356 21.3
Rhsim01G0287800 Rhododendron simsii HOM05D005189 ORTHO05D006093 6.1e-06 56.2 338 22.2
Eucgr.D00103 Eucalyptus grandis HOM05D005189 ORTHO05D006093 8.0e-06 55.8 382 20.9
Oeu021746.1 Olea europaea HOM05D005189 ORTHO05D006093 8.0e-06 55.8 152 25.7


User provided reference genes

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