Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s2564 Capsella rubella HOM05D004438 ORTHO05D005256 2.8e-67 258.5 128 100.0
AT5G64816 Arabidopsis thaliana HOM05D004438 ORTHO05D005256 9.0e-66 253.4 127 97.6
CARHR278820 Cardamine hirsuta HOM05D004438 ORTHO05D005256 1.2e-65 253.1 128 98.4
AL8G42290 Arabidopsis lyrata HOM05D004438 ORTHO05D005256 3.4e-65 251.5 127 96.9
BcaB02g09832 Brassica carinata HOM05D004438 ORTHO05D005256 1.1e-63 246.5 128 95.3
BcaC01g02715 Brassica carinata HOM05D004438 ORTHO05D005256 1.1e-63 246.5 128 95.3
BolC3t18395H Brassica oleracea HOM05D004438 ORTHO05D005256 1.1e-63 246.5 128 95.3
Sp2g27890 Schrenkiella parvula HOM05D004438 ORTHO05D005256 1.1e-63 246.5 128 95.3
A06p31610 Brassica napus HOM05D004438 ORTHO05D005256 2.1e-62 242.3 126 94.4
C03p61350 Brassica napus HOM05D004438 ORTHO05D005256 2.7e-62 241.9 127 93.7
BraA06t26098Z Brassica rapa HOM05D004438 ORTHO05D005256 2.7e-62 241.9 127 93.7
Thhalv10005124m.g Eutrema salsugineum HOM05D004438 ORTHO05D005256 3.5e-62 241.5 128 93.0
Cpa.g.sc21.8 Carica papaya HOM05D004438 ORTHO05D005256 1.9e-60 235.7 123 91.1
AUR62027160 Chenopodium quinoa HOM05D004438 ORTHO05D005256 2.5e-60 235.3 121 90.9
AUR62044399 Chenopodium quinoa HOM05D004438 ORTHO05D005256 2.5e-60 235.3 121 90.9
COL.COLO4_11000 Corchorus olitorius HOM05D004438 ORTHO05D005256 2.5e-60 235.3 126 88.9
Rhsim10G0149000 Rhododendron simsii HOM05D004438 ORTHO05D005256 2.5e-60 235.3 123 90.2
Actinidia06107 Actinidia chinensis HOM05D004438 ORTHO05D005256 4.3e-60 234.6 126 88.1
Haze_25054 Corylus avellana HOM05D004438 ORTHO05D005256 5.6e-60 234.2 126 87.3
THA.LOC104799304 Tarenaya hassleriana HOM05D004438 ORTHO05D005256 5.6e-60 234.2 123 92.7
Ah.03g137490 Amaranthus hybridus HOM05D004438 ORTHO05D005256 7.4e-60 233.8 126 86.5
Cfa002762 Carpinus fangiana HOM05D004438 ORTHO05D005256 7.4e-60 233.8 123 88.6
MD15G1340400 Malus domestica HOM05D004438 ORTHO05D005256 7.4e-60 233.8 124 91.1
Prupe.4G171500 Prunus persica HOM05D004438 ORTHO05D005256 1.3e-59 233.0 124 92.7
PSO675G7198 Papaver somniferum HOM05D004438 ORTHO05D005256 1.6e-59 232.6 126 87.3
Duzib187G1770 Durio zibethinus HOM05D004438 ORTHO05D005256 2.1e-59 232.3 126 87.3
Peaxi162Scf00106g00162 Petunia axillaris HOM05D004438 ORTHO05D005256 2.1e-59 232.3 123 88.6
Thecc.01G114400 Theobroma cacao HOM05D004438 ORTHO05D005256 2.1e-59 232.3 126 88.1
Dinv42684 Davidia involucrata HOM05D004438 ORTHO05D005256 2.8e-59 231.9 126 87.3
Solyc04g051710.2 Solanum lycopersicum HOM05D004438 ORTHO05D005256 2.8e-59 231.9 123 87.8
Sopen04g023090 Solanum pennellii HOM05D004438 ORTHO05D005256 2.8e-59 231.9 123 87.8
THA.LOC104819312 Tarenaya hassleriana HOM05D004438 ORTHO05D005256 2.8e-59 231.9 127 88.2
CSS0020413 Camellia sinensis var. sinensis HOM05D004438 ORTHO05D005256 3.7e-59 231.5 126 87.3
Glyma.01G200000 Glycine max HOM05D004438 ORTHO05D005256 3.7e-59 231.5 128 84.4
Gohir.A11G197600 Gossypium hirsutum HOM05D004438 ORTHO05D005256 3.7e-59 231.5 126 86.5
Gorai.007G245000 Gossypium raimondii HOM05D004438 ORTHO05D005256 4.8e-59 231.1 126 86.5
RcHm_v2.0_Chr2g0117091 Rosa chinensis HOM05D004438 ORTHO05D005256 4.8e-59 231.1 126 88.9
MD03G1238400 Malus domestica HOM05D004438 ORTHO05D005256 6.2e-59 230.7 124 90.3
PSO541G1989 Papaver somniferum HOM05D004438 ORTHO05D005256 6.2e-59 230.7 126 86.5
Phvul.L002244 Phaseolus vulgaris HOM05D004438 ORTHO05D005256 6.2e-59 230.7 124 86.3
PGSC0003DMG400031197 Solanum tuberosum HOM05D004438 ORTHO05D005256 6.2e-59 230.7 123 87.0
TWI53G0984 Tripterygium wilfordii HOM05D004438 ORTHO05D005256 6.2e-59 230.7 122 89.3
VMungo0720G0202 Vigna mungo HOM05D004438 ORTHO05D005256 6.2e-59 230.7 124 86.3
Glyma.10G190000 Glycine max HOM05D004438 ORTHO05D005256 1.1e-58 229.9 128 84.4
Aa31LG1G17110 Aethionema arabicum HOM05D004438 ORTHO05D005256 1.4e-58 229.6 128 88.3
Eucgr.F02140 Eucalyptus grandis HOM05D004438 ORTHO05D005256 1.4e-58 229.6 128 83.6
MBI11_g03707_MAGBIO Magnolia biondii HOM05D004438 ORTHO05D005256 1.4e-58 229.6 128 83.6
FvH4_1g22770 Fragaria vesca HOM05D004438 ORTHO05D005256 1.8e-58 229.2 126 88.1
FAN19G1036 Fragaria x ananassa HOM05D004438 ORTHO05D005256 1.8e-58 229.2 126 88.1
FAN23G1009 Fragaria x ananassa HOM05D004438 ORTHO05D005256 1.8e-58 229.2 126 88.1
FAN26G1829 Fragaria x ananassa HOM05D004438 ORTHO05D005256 1.8e-58 229.2 126 88.1
FAN28G0942 Fragaria x ananassa HOM05D004438 ORTHO05D005256 1.8e-58 229.2 126 88.1
Prupe.6G170300 Prunus persica HOM05D004438 ORTHO05D005256 1.8e-58 229.2 126 88.9
QL06p031963 Quercus lobata HOM05D004438 ORTHO05D005256 1.8e-58 229.2 126 84.9
Ah.02g126620 Amaranthus hybridus HOM05D004438 ORTHO05D005256 2.4e-58 228.8 126 84.1
ClCG01G016040 Citrullus lanatus HOM05D004438 ORTHO05D005256 3.1e-58 228.4 126 84.1
Dinv19477 Davidia involucrata HOM05D004438 ORTHO05D005256 5.3e-58 227.6 125 85.6
Oeu027202.1 Olea europaea HOM05D004438 ORTHO05D005256 5.3e-58 227.6 126 83.3
Glyma.20G200800 Glycine max HOM05D004438 ORTHO05D005256 1.2e-57 226.5 128 81.2
Gohir.D11G231900 Gossypium hirsutum HOM05D004438 ORTHO05D005256 1.2e-57 226.5 126 85.7
Lalb_Chr02g0150651 Lupinus albus HOM05D004438 ORTHO05D005256 1.5e-57 226.1 122 86.1
Nitab4.5_0000131g0360 Nicotiana tabacum HOM05D004438 ORTHO05D005256 1.5e-57 226.1 127 84.3
MSTRG.9937 Avicennia marina HOM05D004438 ORTHO05D005256 2.0e-57 225.7 126 84.9
MD15G1331400 Malus domestica HOM05D004438 ORTHO05D005256 2.0e-57 225.7 124 88.7
Nitab4.5_0003709g0100 Nicotiana tabacum HOM05D004438 ORTHO05D005256 2.0e-57 225.7 124 85.5
CiPaw.03G133700 Carya illinoinensis HOM05D004438 ORTHO05D005256 2.6e-57 225.3 126 82.5
Cc10_g15830 Coffea canephora HOM05D004438 ORTHO05D005256 2.6e-57 225.3 127 83.5
CsaV3_6G042320 Cucumis sativus L. HOM05D004438 ORTHO05D005256 2.6e-57 225.3 126 82.5
Gohir.A10G084200 Gossypium hirsutum HOM05D004438 ORTHO05D005256 2.6e-57 225.3 124 83.9
QL01p009111 Quercus lobata HOM05D004438 ORTHO05D005256 2.6e-57 225.3 123 85.4
TPR.G28848 Trifolium pratense HOM05D004438 ORTHO05D005256 2.6e-57 225.3 124 84.7
Aqoxy2G01099 Aquilegia oxysepala HOM05D004438 ORTHO05D005256 3.4e-57 224.9 126 86.5
Gorai.011G114100 Gossypium raimondii HOM05D004438 ORTHO05D005256 3.4e-57 224.9 124 83.1
Lj5g0016992 Lotus japonicus HOM05D004438 ORTHO05D005256 4.5e-57 224.6 124 83.9
DCAR_009568 Daucus carota HOM05D004438 ORTHO05D005256 5.8e-57 224.2 127 81.9
Potri.002G105400 Populus trichocarpa HOM05D004438 ORTHO05D005256 5.8e-57 224.2 128 83.6
vmacro18638 Vaccinium macrocarpon HOM05D004438 ORTHO05D005256 5.8e-57 224.2 126 84.1
Medtr1g073620 Medicago truncatula HOM05D004438 ORTHO05D005256 7.6e-57 223.8 124 83.9
Os03g0185600 Oryza sativa ssp. japonica HOM05D004438 ORTHO05D005256 7.6e-57 223.8 123 82.9
Peaxi162Scf00979g00008 Petunia axillaris HOM05D004438 ORTHO05D005256 7.6e-57 223.8 124 85.5
Zm00001eb006400 Zea mays HOM05D004438 ORTHO05D005256 7.6e-57 223.8 123 84.6
Gohir.D10G104600 Gossypium hirsutum HOM05D004438 ORTHO05D005256 1.0e-56 223.4 124 82.3
SGA_v2.0_scaffold79G25619 Striga asiatica HOM05D004438 ORTHO05D005256 1.0e-56 223.4 126 82.5
Gohir.A11G053800 Gossypium hirsutum HOM05D004438 ORTHO05D005256 1.3e-56 223.0 123 82.9
TAR381G0625 Trochodendron aralioides HOM05D004438 ORTHO05D005256 1.7e-56 222.6 126 84.1
CANSAT01G2942 Cannabis sativa HOM05D004438 ORTHO05D005256 3.8e-56 221.5 123 86.2
DCAR_009565 Daucus carota HOM05D004438 ORTHO05D005256 3.8e-56 221.5 127 81.1
Potri.005G156400 Populus trichocarpa HOM05D004438 ORTHO05D005256 3.8e-56 221.5 128 82.8
Sed0003177 Sechium edule HOM05D004438 ORTHO05D005256 3.8e-56 221.5 126 81.7
CAN.G344.10 Capsicum annuum HOM05D004438 ORTHO05D005256 4.9e-56 221.1 123 83.7
Lsat_1_v5_gn_8_150501 Lactuca sativa HOM05D004438 ORTHO05D005256 4.9e-56 221.1 124 86.3
SalBow3G3218 Salvia bowleyana HOM05D004438 ORTHO05D005256 4.9e-56 221.1 123 82.9
Sed0014495 Sechium edule HOM05D004438 ORTHO05D005256 4.9e-56 221.1 126 80.2
TWI74G1039 Tripterygium wilfordii HOM05D004438 ORTHO05D005256 4.9e-56 221.1 119 86.6
MELO3C007474.2 Cucumis melo HOM05D004438 ORTHO05D005256 6.5e-56 220.7 126 81.7
Gohir.D11G057300 Gossypium hirsutum HOM05D004438 ORTHO05D005256 6.5e-56 220.7 123 81.3
RcHm_v2.0_Chr5g0031621 Rosa chinensis HOM05D000965 ORTHO05D000842 8.4e-56 220.3 122 85.2
Zm00001eb401580 Zea mays HOM05D004438 ORTHO05D005256 8.4e-56 220.3 123 83.7
Migut.N00230 Erythranthe guttata HOM05D004438 ORTHO05D005256 1.1e-55 219.9 126 82.5
HanXRQChr12g0372061 Helianthus annuus HOM05D004438 ORTHO05D005256 1.1e-55 219.9 124 86.3
TAR625G0091 Trochodendron aralioides HOM05D004438 ORTHO05D005256 1.4e-55 219.5 126 81.7
ECA233G2293 Erigeron canadensis HOM05D004438 ORTHO05D005256 1.9e-55 219.2 127 85.0
Sopen00g011470 Solanum pennellii HOM05D004438 ORTHO05D005256 1.9e-55 219.2 124 83.1
Solyc04g076260.2 Solanum lycopersicum HOM05D004438 ORTHO05D005256 2.5e-55 218.8 124 83.9
SGA_v2.0_scaffold308G48110 Striga asiatica HOM05D004438 ORTHO05D005256 4.2e-55 218.0 126 80.2
CAN.G475.35 Capsicum annuum HOM05D004438 ORTHO05D005256 1.2e-54 216.5 124 83.1
Nitab4.5_0000184g0290 Nicotiana tabacum HOM05D004438 ORTHO05D005256 1.2e-54 216.5 115 87.0
Nn5g29898 Nelumbo nucifera HOM05D004438 ORTHO05D005256 2.1e-54 215.7 127 81.1
Psat6g129880 Pisum sativum HOM05D004438 ORTHO05D005256 2.1e-54 215.7 124 78.2
HPP92_015825 Vanilla planifolia HOM05D004438 ORTHO05D005256 2.7e-54 215.3 123 79.7
Atru.chr13.1020 Acer truncatum HOM05D004438 ORTHO05D005256 3.5e-54 214.9 124 79.8
Ciclev10002841m.g Citrus clementina HOM05D004438 ORTHO05D005256 4.6e-54 214.5 128 78.9
PGSC0003DMG400009364 Solanum tuberosum HOM05D004438 ORTHO05D005256 4.6e-54 214.5 124 82.3
TAR625G0287 Trochodendron aralioides HOM05D004438 ORTHO05D005256 6.0e-54 214.2 128 78.1
Psat7g208520 Pisum sativum HOM05D004438 ORTHO05D005256 1.0e-53 213.4 124 79.8
GSVIVG01009169001 Vitis vinifera HOM05D004438 ORTHO05D005256 5.1e-53 211.1 124 79.0
Manes.10G131700 Manihot esculenta HOM05D004438 ORTHO05D005256 1.9e-52 209.1 124 78.2
Sc03g0004400 Simmondsia chinensis HOM05D004438 ORTHO05D005256 3.3e-52 208.4 125 77.6
unitig_699.g19132 Utricularia gibba HOM05D004438 ORTHO05D005256 2.1e-51 205.7 123 77.2
Sabra02G0082700 Salix brachista HOM05D004438 ORTHO05D005256 2.8e-51 205.3 112 84.8
SalBow2G1806 Salvia bowleyana HOM05D004438 ORTHO05D005256 2.8e-51 205.3 124 78.2
EL10Ac6g13106 Beta vulgaris HOM05D004438 ORTHO05D005256 1.8e-50 202.6 107 88.8
Nitab4.5_0004977g0040 Nicotiana tabacum HOM05D004438 ORTHO05D005256 4.1e-50 201.4 107 87.9
Manes.02G145100 Manihot esculenta HOM05D004438 ORTHO05D005256 2.0e-49 199.1 110 84.5
Sc23g0000680 Simmondsia chinensis HOM05D004438 ORTHO05D005256 3.4e-49 198.4 124 75.0
FvH4_3g18771 Fragaria vesca HOM05D004438 ORTHO05D005256 4.5e-49 198.0 115 82.6
Lalb_Chr21g0312471 Lupinus albus HOM05D004438 ORTHO05D005256 5.8e-49 197.6 118 77.1
Sabra05G0119900 Salix brachista HOM05D004438 ORTHO05D005256 1.3e-48 196.4 112 82.1
ATR1132G028 Amborella trichopoda HOM05D004438 ORTHO05D005256 2.2e-48 195.7 128 75.8
Gorai.007G062500 Gossypium raimondii HOM05D004438 ORTHO05D005256 3.8e-48 194.9 123 74.8
CDE02G2078 Ceratophyllum demersum HOM05D004438 ORTHO05D005256 1.1e-47 193.4 112 80.4
FAN16G1755 Fragaria x ananassa HOM05D004438 ORTHO05D005256 2.5e-47 192.2 107 86.9
Nn1g08461 Nelumbo nucifera HOM05D004438 ORTHO05D005256 5.5e-47 191.0 103 87.4
Duzib264G0014 Durio zibethinus HOM05D004438 ORTHO05D005256 1.6e-46 189.5 101 88.1
TWI56G0149 Tripterygium wilfordii HOM05D004438 ORTHO05D005256 1.8e-45 186.0 125 73.6
SHI31196 Sapria himalayana HOM05D004438 ORTHO05D005256 6.7e-45 184.1 128 68.8
Migut.G00404 Erythranthe guttata HOM05D004438 ORTHO05D005256 2.2e-43 179.1 136 67.6
FAN21G3234 Fragaria x ananassa HOM05D000965 ORTHO05D000842 2.2e-43 179.1 98 85.7
FAN11G0727 Fragaria x ananassa HOM05D000965 ORTHO05D000842 2.8e-43 178.7 108 81.5
Oeu028520.2 Olea europaea HOM05D004438 ORTHO05D005256 6.3e-43 177.6 117 74.4
Nitab4.5_0004977g0030 Nicotiana tabacum HOM05D004438 ORTHO05D005256 1.2e-41 173.3 89 91.0
CSS0036861 Camellia sinensis var. sinensis HOM05D004438 ORTHO05D005256 2.0e-41 172.6 98 84.7
Mapoly0031s0095 Marchantia polymorpha HOM05D004438 ORTHO05D005256 1.7e-40 169.5 123 67.5
Rhsim08G0005900 Rhododendron simsii HOM05D004438 ORTHO05D005256 6.5e-40 167.5 102 78.4
AagrBONN_evm.TU.Sc2ySwM_117.295 Anthoceros agrestis HOM05D004438 ORTHO05D005256 5.5e-39 164.5 125 62.4
Pp3c22_12110 Physcomitrium patens HOM05D004438 ORTHO05D005256 1.2e-38 163.3 119 66.4
SEGI_36857 Sequoiadendron giganteum HOM05D004438 ORTHO05D005256 5.1e-37 157.9 88 79.5
COL.COLO4_35234 Corchorus olitorius HOM05D004438 ORTHO05D005256 2.5e-36 155.6 132 61.4
Pp3c19_18370 Physcomitrium patens HOM05D004438 ORTHO05D005256 6.5e-32 141.0 119 57.1
Gohir.1Z049407 Gossypium hirsutum HOM05D004438 ORTHO05D005256 1.9e-31 139.4 67 95.5
SEGI_35678 Sequoiadendron giganteum HOM05D004438 ORTHO05D005256 2.1e-30 136.0 124 56.5
AagrBONN_evm.TU.Sc2ySwM_344.1988 Anthoceros agrestis HOM05D004438 ORTHO05D005256 3.9e-29 131.7 121 53.7
arahy.Tifrunner.gnm1.ann1.7JV24P Arachis hypogaea HOM05D004438 ORTHO05D005256 3.5e-25 118.6 57 91.2
CSS0009061 Camellia sinensis var. sinensis HOM05D004438 ORTHO05D005256 4.5e-25 118.2 112 58.0
CSS0034319 Camellia sinensis var. sinensis HOM05D004438 ORTHO05D005256 1.0e-24 117.1 113 57.5
CiPaw.04G091100 Carya illinoinensis HOM05D004438 ORTHO05D005256 3.0e-21 105.5 62 79.0
PRCOL_00001176 Prasinoderma coloniale HOM05D004438 ORTHO05D005256 3.0e-21 105.5 74 58.1
MCO08G336 Micromonas commoda HOM05D004438 ORTHO05D005256 9.7e-20 100.5 105 49.5
Cre07.g313800 Chlamydomonas reinhardtii HOM05D004438 ORTHO05D005256 2.2e-19 99.4 81 54.3
ATR0049G041 Amborella trichopoda HOM05D004438 ORTHO05D005256 3.1e-18 95.5 125 41.6
CSS0036545 Camellia sinensis var. sinensis HOM05D004438 ORTHO05D005256 9.4e-15 84.0 46 87.0
Hund21738 Selenicereus undatus HOM05D004438 ORTHO05D005256 1.5e-12 76.6 35 100.0
SalBow2G3602 Salvia bowleyana HOM05D004438 ORTHO05D005256 5.9e-09 64.7 32 84.4
CBR_g51299 Chara braunii HOM05D004438 ORTHO05D005256 1.7e-08 63.2 35 77.1
SalBow1G8643 Salvia bowleyana HOM05D000379 ORTHO05D000254 1.1e-07 60.5 33 75.8


User provided reference genes

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