Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s2535 Capsella rubella HOM05D003963 ORTHO05D004558 6.6e-202 708.0 636 100.0
AT5G64550 Arabidopsis thaliana HOM05D003963 ORTHO05D004558 6.0e-187 658.3 636 95.1
AL8G41940 Arabidopsis lyrata HOM05D003963 ORTHO05D004558 1.7e-186 656.8 636 95.0
Sp2g27620 Schrenkiella parvula HOM05D003963 ORTHO05D004558 1.5e-169 600.5 637 92.6
Thhalv10003819m.g Eutrema salsugineum HOM05D003963 ORTHO05D004558 3.0e-154 549.7 644 89.6
CARHR278520 Cardamine hirsuta HOM05D003963 ORTHO05D004558 2.0e-150 537.0 639 87.9
BcaC03g18430 Brassica carinata HOM05D003963 ORTHO05D004558 1.7e-149 533.9 640 88.9
BraA06t26067Z Brassica rapa HOM05D003963 ORTHO05D004558 1.7e-141 507.3 638 86.8
BolC3t18432H Brassica oleracea HOM05D003963 ORTHO05D004558 4.7e-139 499.2 638 86.4
C03p61710 Brassica napus HOM05D003963 ORTHO05D004558 1.2e-137 494.6 639 86.2
A06p31280 Brassica napus HOM05D003963 ORTHO05D004558 1.6e-134 484.2 639 85.6
BcaB07g29747 Brassica carinata HOM05D003963 ORTHO05D004558 2.6e-121 440.3 629 84.3
A02p43350 Brassica napus HOM05D003963 ORTHO05D004558 7.5e-113 412.1 638 82.0
BraA02t09261Z Brassica rapa HOM05D003963 ORTHO05D004558 3.7e-112 409.8 637 81.9
C02p63440 Brassica napus HOM05D003963 ORTHO05D004558 7.3e-108 395.6 637 79.7
BolC2t12411H Brassica oleracea HOM05D003963 ORTHO05D004558 7.3e-108 395.6 637 79.7
Aa31LG1G17380 Aethionema arabicum HOM05D003963 ORTHO05D004558 1.3e-104 384.8 645 78.0
A09p08700 Brassica napus HOM05D003963 ORTHO05D004558 2.7e-102 377.1 624 77.9
BraA09t36518Z Brassica rapa HOM05D003963 ORTHO05D004558 7.8e-102 375.6 624 77.9
Aa31LG3G17400 Aethionema arabicum HOM05D003963 ORTHO05D004558 9.8e-97 358.6 649 71.8
Aa31sc1834G20 Aethionema arabicum HOM05D003963 ORTHO05D004558 2.1e-94 350.9 642 72.1
THA.LOC104799580 Tarenaya hassleriana HOM05D003963 ORTHO05D004558 1.1e-84 318.5 658 72.0
Sp6g33710 Schrenkiella parvula HOM05D003963 ORTHO05D004558 2.1e-70 271.2 644 69.3
Thhalv10013049m.g Eutrema salsugineum HOM05D003963 ORTHO05D004558 1.3e-67 261.9 644 69.6
TWI59G0617 Tripterygium wilfordii HOM05D003963 ORTHO05D004558 8.1e-67 259.2 665 66.3
AL6G20100 Arabidopsis lyrata HOM05D003963 ORTHO05D004558 7.6e-65 252.7 641 68.6
Potri.003G023300 Populus trichocarpa HOM05D003963 ORTHO05D004558 9.9e-65 252.3 658 63.4
TWI23G1041 Tripterygium wilfordii HOM05D003963 ORTHO05D004558 1.3e-64 251.9 666 64.6
Manes.04G062400 Manihot esculenta HOM05D003963 ORTHO05D004558 6.4e-64 249.6 663 62.9
Cpa.g.sc0.13 Carica papaya HOM05D003963 ORTHO05D004558 4.2e-63 246.9 664 63.9
Sabra03G0014600 Salix brachista HOM05D003963 ORTHO05D004558 2.1e-62 244.6 656 63.7
Potri.001G206600 Populus trichocarpa HOM05D003963 ORTHO05D004558 3.5e-62 243.8 659 62.8
Thecc.02G143400 Theobroma cacao HOM05D003963 ORTHO05D004558 1.8e-61 241.5 662 62.5
Duzib052G0219 Durio zibethinus HOM05D003963 ORTHO05D004558 2.8e-59 234.2 662 62.7
COL.COLO4_20869 Corchorus olitorius HOM05D003963 ORTHO05D004558 6.2e-59 233.0 665 62.7
FvH4_5g30651 Fragaria vesca HOM05D003963 ORTHO05D004558 2.4e-58 231.1 654 62.5
RcHm_v2.0_Chr7g0225521 Rosa chinensis HOM05D003963 ORTHO05D004558 3.1e-58 230.7 654 62.8
Gorai.013G063300 Gossypium raimondii HOM05D003963 ORTHO05D004558 9.0e-58 229.2 663 64.0
ClCG06G009720 Citrullus lanatus HOM05D003963 ORTHO05D004558 2.0e-57 228.0 654 61.6
AT5G09670 Arabidopsis thaliana HOM05D003963 ORTHO05D004558 2.6e-57 227.6 615 69.3
Sabra03G0014700 Salix brachista HOM05D003963 ORTHO05D004558 3.4e-57 227.3 651 63.7
FAN13G1550 Fragaria x ananassa HOM05D003963 ORTHO05D004558 5.8e-57 226.5 653 64.6
FAN04G2665 Fragaria x ananassa HOM05D003963 ORTHO05D004558 1.3e-56 225.3 653 62.3
Ciclev10000572m.g Citrus clementina HOM05D003963 ORTHO05D004558 2.2e-56 224.6 656 63.6
Gohir.D13G056000 Gossypium hirsutum HOM05D003963 ORTHO05D004558 8.4e-56 222.6 663 64.4
MD08G1221900 Malus domestica HOM05D003963 ORTHO05D004558 1.1e-55 222.2 658 61.6
QL11p019412 Quercus lobata HOM05D003963 ORTHO05D004558 5.5e-55 219.9 659 62.4
Haze_09992 Corylus avellana HOM05D003963 ORTHO05D004558 1.2e-54 218.8 659 62.5
Sed0018276 Sechium edule HOM05D003963 ORTHO05D004558 1.2e-54 218.8 657 61.2
CsaV3_2G011200 Cucumis sativus L. HOM05D003963 ORTHO05D004558 1.6e-54 218.4 656 61.6
MELO3C020350.2 Cucumis melo HOM05D003963 ORTHO05D004558 2.1e-54 218.0 656 61.6
AUR62031300 Chenopodium quinoa HOM05D003963 ORTHO05D004558 2.7e-54 217.6 652 62.0
AUR62027385 Chenopodium quinoa HOM05D003963 ORTHO05D004558 3.5e-54 217.2 652 62.1
CARHR203720 Cardamine hirsuta HOM05D003963 ORTHO05D004558 1.3e-53 215.3 635 67.4
Duzib248G1667 Durio zibethinus HOM05D003963 ORTHO05D004558 1.3e-53 215.3 662 62.4
Gohir.A13G065700 Gossypium hirsutum HOM05D003963 ORTHO05D004558 1.3e-53 215.3 663 64.4
MD15G1414300 Malus domestica HOM05D003963 ORTHO05D004558 5.1e-53 213.4 662 61.5
Prupe.1G559700 Prunus persica HOM05D003963 ORTHO05D004558 6.7e-53 213.0 657 61.2
BolC9t53891H Brassica oleracea HOM05D003963 ORTHO05D004558 1.1e-52 212.2 229 54.1
Cfa005579 Carpinus fangiana HOM05D003963 ORTHO05D004558 7.4e-52 209.5 656 62.0
CANSAT11G0470 Cannabis sativa HOM05D003963 ORTHO05D004558 1.6e-51 208.4 658 61.9
EL10Ac8g19340 Beta vulgaris HOM05D003963 ORTHO05D004558 2.2e-51 208.0 651 63.3
Haze_10775 Corylus avellana HOM05D003963 ORTHO05D004558 2.2e-51 208.0 661 61.7
CSS0022227 Camellia sinensis var. sinensis HOM05D003963 ORTHO05D004558 5.9e-49 199.9 667 62.5
CSS0000527 Camellia sinensis var. sinensis HOM05D003963 ORTHO05D004558 7.6e-49 199.5 667 62.5
Gorai.005G217900 Gossypium raimondii HOM05D003963 ORTHO05D004558 1.3e-48 198.7 655 60.8
Gohir.D02G195000 Gossypium hirsutum HOM05D003963 ORTHO05D004558 2.2e-48 198.0 655 60.8
Hma1.2p1_0217F.1_g091740 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 6.5e-48 196.4 648 61.9
Ah.09g232110 Amaranthus hybridus HOM05D003963 ORTHO05D004558 1.1e-47 195.7 640 61.1
C09p09830 Brassica napus HOM05D003963 ORTHO05D004558 1.4e-47 195.3 596 64.9
Glyma.08G074900 Glycine max HOM05D003963 ORTHO05D004558 3.2e-47 194.1 654 60.7
Glyma.05G120100 Glycine max HOM05D003963 ORTHO05D004558 4.2e-47 193.7 654 60.4
VMungo0251G0315 Vigna mungo HOM05D003963 ORTHO05D004558 7.2e-47 193.0 658 60.2
Dinv19323 Davidia involucrata HOM05D003963 ORTHO05D004558 9.3e-47 192.6 667 59.4
BcaC04g23312 Brassica carinata HOM05D003963 ORTHO05D004558 6.1e-46 189.9 598 67.2
Dinv24217 Davidia involucrata HOM05D003963 ORTHO05D004558 7.9e-46 189.5 646 61.6
Atru.chr6.908 Acer truncatum HOM05D003963 ORTHO05D004558 1.0e-45 189.1 261 47.1
DCAR_029216 Daucus carota HOM05D003963 ORTHO05D004558 1.0e-45 189.1 666 61.7
Lj4g0008212 Lotus japonicus HOM05D003963 ORTHO05D004558 1.3e-43 182.2 661 59.9
CiPaw.05G038900 Carya illinoinensis HOM05D003963 ORTHO05D004558 1.7e-43 181.8 662 59.7
Oeu037198.2 Olea europaea HOM05D003963 ORTHO05D004558 2.8e-43 181.0 658 59.1
Medtr4g094290 Medicago truncatula HOM05D003963 ORTHO05D004558 4.8e-43 180.3 655 60.5
Cc02_g21840 Coffea canephora HOM05D003963 ORTHO05D004558 6.3e-43 179.9 645 60.2
Actinidia28070 Actinidia chinensis HOM05D003963 ORTHO05D004558 8.2e-43 179.5 662 58.5
Eucgr.I02691 Eucalyptus grandis HOM05D003963 ORTHO05D004558 1.4e-42 178.7 659 60.7
Ah.14g085400 Amaranthus hybridus HOM05D003963 ORTHO05D004558 2.4e-42 177.9 650 60.5
Ca_18336_v3 Cicer arietinum L. HOM05D003963 ORTHO05D004558 2.4e-42 177.9 662 61.0
Lalb_Chr13g0291591 Lupinus albus HOM05D003963 ORTHO05D004558 5.3e-42 176.8 659 61.0
BcaB05g21539 Brassica carinata HOM05D003963 ORTHO05D004558 1.5e-41 175.3 639 61.0
Nn1g05173 Nelumbo nucifera HOM05D003963 ORTHO05D004558 2.6e-41 174.5 660 60.0
BcaB04g19973 Brassica carinata HOM05D003963 ORTHO05D004558 4.5e-41 173.7 564 30.3
vmacro01810 Vaccinium macrocarpon HOM05D003963 ORTHO05D004558 7.7e-41 172.9 628 60.7
Gohir.A03G171700 Gossypium hirsutum HOM05D003963 ORTHO05D004558 1.3e-40 172.2 593 63.9
TAR381G1468 Trochodendron aralioides HOM05D003963 ORTHO05D004558 2.9e-40 171.0 657 61.8
Phvul.002G206700 Phaseolus vulgaris HOM05D003963 ORTHO05D004558 3.8e-40 170.6 601 62.9
GSVIVG01038733001 Vitis vinifera HOM05D003963 ORTHO05D004558 6.5e-40 169.9 246 47.6
ECA236G3037 Erigeron canadensis HOM05D003963 ORTHO05D004558 1.4e-39 168.7 648 62.5
Hma1.2p1_0557F.1_g178060 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 3.2e-39 167.5 638 61.6
A02p00100 Brassica napus HOM05D003963 ORTHO05D004558 4.2e-39 167.2 615 61.0
PGSC0003DMG400029740 Solanum tuberosum HOM05D003963 ORTHO05D004558 4.2e-39 167.2 639 61.7
Peaxi162Scf00001g00041 Petunia axillaris HOM05D003963 ORTHO05D004558 5.5e-39 166.8 635 59.7
Peaxi162Scf00001g00043 Petunia axillaris HOM05D003963 ORTHO05D004558 5.5e-39 166.8 635 59.7
HanXRQChr11g0337121 Helianthus annuus HOM05D003963 ORTHO05D004558 7.2e-39 166.4 645 60.0
Sc14g0002710 Simmondsia chinensis HOM05D003963 ORTHO05D004558 9.4e-39 166.0 654 58.7
Psat7g097440 Pisum sativum HOM05D003963 ORTHO05D004558 1.2e-38 165.6 654 59.0
CiPaw.06G151200 Carya illinoinensis HOM05D003963 ORTHO05D004558 1.6e-38 165.2 667 58.6
Nitab4.5_0002865g0100 Nicotiana tabacum HOM05D003963 ORTHO05D004558 1.6e-38 165.2 643 59.6
BraA02t04995Z Brassica rapa HOM05D003963 ORTHO05D004558 6.1e-38 163.3 615 63.6
Nitab4.5_0003748g0020 Nicotiana tabacum HOM05D003963 ORTHO05D004558 1.0e-37 162.5 640 58.9
Solyc01g104910.3 Solanum lycopersicum HOM05D003963 ORTHO05D004558 1.8e-37 161.8 636 61.2
CAN.G523.95 Capsicum annuum HOM05D003963 ORTHO05D004558 2.3e-37 161.4 640 61.4
Sopen01g047420 Solanum pennellii HOM05D003963 ORTHO05D004558 3.0e-37 161.0 640 60.6
Atru.chr10.2101 Acer truncatum HOM05D003963 ORTHO05D004558 3.9e-37 160.6 247 44.9
Aqoxy6G00464 Aquilegia oxysepala HOM05D003963 ORTHO05D004558 8.8e-37 159.5 655 61.1
Lsat_1_v5_gn_7_80140 Lactuca sativa HOM05D003963 ORTHO05D004558 2.0e-36 158.3 635 59.7
Rhsim11G0134700 Rhododendron simsii HOM05D003963 ORTHO05D004558 3.3e-36 157.5 655 58.0
Peaxi162Scf00003g00367 Petunia axillaris HOM05D003963 ORTHO05D004558 1.3e-35 155.6 635 60.9
PSO541G3622 Papaver somniferum HOM05D003963 ORTHO05D004558 2.2e-35 154.8 643 60.5
Actinidia00250 Actinidia chinensis HOM05D003963 ORTHO05D004558 6.3e-35 153.3 595 60.5
Migut.B00637 Erythranthe guttata HOM05D003963 ORTHO05D004558 9.1e-34 149.4 625 59.2
Oeu037196.1 Olea europaea HOM05D003963 ORTHO05D004558 9.1e-34 149.4 264 41.7
Nn5g28887 Nelumbo nucifera HOM05D003963 ORTHO05D004558 1.2e-33 149.1 666 48.5
SalBow5G2159 Salvia bowleyana HOM05D003963 ORTHO05D004558 1.2e-33 149.1 637 59.3
Hund06704 Selenicereus undatus HOM05D003963 ORTHO05D004558 7.7e-33 146.4 612 60.9
TPR.G10467 Trifolium pratense HOM05D003963 ORTHO05D004558 3.8e-32 144.1 258 41.1
Oeu000233.2 Olea europaea HOM05D003963 ORTHO05D004558 6.5e-32 143.3 636 60.5
SalBow6G3757 Salvia bowleyana HOM05D003963 ORTHO05D004558 1.4e-31 142.1 631 59.9
SalBow6G4534 Salvia bowleyana HOM05D003963 ORTHO05D004558 1.4e-31 142.1 631 59.9
MBI05_g46461_MAGBIO Magnolia biondii HOM05D003963 ORTHO05D004558 2.5e-31 141.4 642 61.5
PSO675G1096 Papaver somniferum HOM05D003963 ORTHO05D004558 2.1e-30 138.3 645 59.4
MSTRG.16566 Avicennia marina HOM05D003963 ORTHO05D004558 3.6e-30 137.5 656 57.3
BcaC03g13269 Brassica carinata HOM05D003963 ORTHO05D004558 4.7e-30 137.1 590 52.5
BolC2t06362H Brassica oleracea HOM05D006324 ORTHO05D007463 4.7e-30 137.1 590 52.5
Lalb_Chr12g0208491 Lupinus albus HOM05D003963 ORTHO05D004558 3.9e-29 134.0 664 57.7
Atru.chr10.2100 Acer truncatum HOM05D003963 ORTHO05D004558 3.3e-28 131.0 240 64.6
Actinidia38971 Actinidia chinensis HOM05D003963 ORTHO05D004558 1.6e-25 122.1 640 58.4
Os04g0458200 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 8.5e-24 116.3 241 39.8
Lalb_Chr07g0189461 Lupinus albus HOM05D003963 ORTHO05D004558 1.9e-23 115.2 642 57.0
Peaxi162Scf00152g01123 Petunia axillaris HOM05D003963 ORTHO05D004558 7.2e-23 113.2 212 41.0
ECA234G1426 Erigeron canadensis HOM05D003963 ORTHO05D004558 9.4e-23 112.8 240 36.7
Rhsim11G0135400 Rhododendron simsii HOM05D003963 ORTHO05D004558 9.4e-23 112.8 257 40.5
Os04g0640900 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 1.6e-22 112.1 250 36.4
Zm00001eb182980 Zea mays HOM05D003963 ORTHO05D004558 2.7e-22 111.3 256 37.5
Zm00001eb080920 Zea mays HOM05D003963 ORTHO05D004558 1.2e-20 105.9 240 37.1
Zm00001eb423980 Zea mays HOM05D003963 ORTHO05D004558 2.6e-20 104.8 240 36.2
Zm00001eb244890 Zea mays HOM05D003963 ORTHO05D004558 6.3e-19 100.1 635 56.9
SGA_v2.0_scaffold45G17289 Striga asiatica HOM05D003963 ORTHO05D004558 1.8e-18 98.6 227 36.6
unitig_62.g23623 Utricularia gibba HOM05D003963 ORTHO05D004558 2.0e-17 95.1 224 34.8
Os02g0575700 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 4.5e-17 94.0 287 33.4
Lj5C243T4 Lonicera japonica HOM05D003963 ORTHO05D004558 2.2e-16 91.7 635 55.3
CDE05G1767 Ceratophyllum demersum HOM05D003963 ORTHO05D004558 1.1e-15 89.4 163 40.5
Zm00001eb068980 Zea mays HOM05D003963 ORTHO05D004558 1.9e-15 88.6 211 36.0
Zm00001eb347870 Zea mays HOM05D003963 ORTHO05D010684 2.5e-15 88.2 214 36.0
CDE02G0069 Ceratophyllum demersum HOM05D003963 ORTHO05D004558 3.2e-15 87.8 243 33.7
HPP92_027148 Vanilla planifolia HOM05D003963 ORTHO05D004558 1.6e-14 85.5 220 37.3
ATR0564G216 Amborella trichopoda HOM05D003963 ORTHO05D004558 8.0e-14 83.2 647 56.1
Lj9P318T69 Lonicera japonica HOM05D003963 ORTHO05D004558 8.0e-14 83.2 453 68.7
Haze_09989 Corylus avellana HOM05D003963 ORTHO05D004558 4.0e-13 80.9 179 35.2
HanXRQChr10g0293231 Helianthus annuus HOM05D003963 ORTHO05D004558 6.8e-13 80.1 240 32.1
SEGI_28658 Sequoiadendron giganteum HOM05D003548 ORTHO05D004066 2.8e-11 74.7 178 36.5
HPP92_016461 Vanilla planifolia HOM05D003963 ORTHO05D004558 3.7e-11 74.3 200 36.0
Pp3c7_8590 Physcomitrium patens HOM05D031910 ORTHO05D004558 1.6e-09 68.9 124 38.7
Lsat_1_v5_gn_5_106681 Lactuca sativa HOM05D003963 ORTHO05D004558 2.0e-09 68.6 635 42.8
Pp3c11_24820 Physcomitrium patens HOM05D031910 ORTHO05D004558 7.7e-09 66.6 239 29.3
Mapoly0048s0020 Marchantia polymorpha HOM05D003963 ORTHO05D004558 6.5e-08 63.5 195 30.8
Peaxi162Scf00074g00156 Petunia axillaris HOM05D003548 ORTHO05D004066 5.5e-07 60.5 64 51.6
SEGI_29670 Sequoiadendron giganteum HOM05D003963 ORTHO05D004558 7.2e-07 60.1 112 41.1
Oeu050927.1 Olea europaea HOM05D003548 ORTHO05D004066 9.5e-07 59.7 105 40.0
Oeu050928.1 Olea europaea HOM05D003548 ORTHO05D004066 9.5e-07 59.7 105 40.0
CAN.G532.68 Capsicum annuum HOM05D003548 ORTHO05D004066 1.6e-06 58.9 68 50.0
DCAR_008526 Daucus carota HOM05D003548 ORTHO05D004066 1.6e-06 58.9 104 41.3
Hund11425 Selenicereus undatus HOM05D000154 ORTHO05D004066 1.6e-06 58.9 41 68.3
ECA232G3387 Erigeron canadensis HOM05D003548 ORTHO05D004066 2.1e-06 58.5 198 31.8
Peaxi162Scf00102g01614 Petunia axillaris HOM05D003548 ORTHO05D004066 2.1e-06 58.5 110 39.1
DCAR_006852 Daucus carota HOM05D003548 ORTHO05D004066 2.8e-06 58.2 44 63.6
Oeu059583.1 Olea europaea HOM05D003548 ORTHO05D004066 2.8e-06 58.2 34 73.5
SalBow1G6595 Salvia bowleyana HOM05D003548 ORTHO05D004066 2.8e-06 58.2 34 73.5
SalBow1G7748 Salvia bowleyana HOM05D003548 ORTHO05D004066 2.8e-06 58.2 34 73.5
Aqoxy5G04044 Aquilegia oxysepala HOM05D003548 ORTHO05D004066 4.7e-06 57.4 41 65.9
Cc08_g15520 Coffea canephora HOM05D003548 ORTHO05D004066 4.7e-06 57.4 34 73.5
AUR62021071 Chenopodium quinoa HOM05D003548 ORTHO05D004066 6.1e-06 57.0 117 37.6
Nitab4.5_0005339g0010 Nicotiana tabacum HOM05D003548 ORTHO05D004066 6.1e-06 57.0 108 38.0
unitig_46.g18812 Utricularia gibba HOM05D003548 ORTHO05D004066 6.1e-06 57.0 107 35.5
Cc02_g02080 Coffea canephora HOM05D003548 ORTHO05D004066 8.0e-06 56.6 109 37.6
Os06g0523100 Oryza sativa ssp. japonica HOM05D003548 ORTHO05D004066 8.0e-06 56.6 142 36.6


User provided reference genes

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