Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s2527 Capsella rubella HOM05D007716 ORTHO05D009780 2.1e-95 352.4 186 100.0
AT5G64480 Arabidopsis thaliana HOM05D007716 ORTHO05D009780 2.4e-75 285.8 186 78.0
CARHR278450 Cardamine hirsuta HOM05D007716 ORTHO05D009780 1.7e-73 279.6 189 79.9
AL8G41850 Arabidopsis lyrata HOM05D007716 ORTHO05D009780 8.4e-73 277.3 186 78.0
BraA06t26061Z Brassica rapa HOM05D007716 ORTHO05D009780 5.9e-66 254.6 188 72.3
A06p31220 Brassica napus HOM05D007716 ORTHO05D009780 7.7e-66 254.2 188 72.3
Sp2g27560 Schrenkiella parvula HOM05D007716 ORTHO05D009780 1.3e-65 253.4 187 71.7
C03p61760 Brassica napus HOM05D007716 ORTHO05D009780 2.9e-65 252.3 188 72.3
BolC3t18437H Brassica oleracea HOM05D007716 ORTHO05D009780 2.9e-65 252.3 188 72.3
Thhalv10004965m.g Eutrema salsugineum HOM05D007716 ORTHO05D009780 1.6e-63 246.5 192 74.5
BcaC01g02685 Brassica carinata HOM05D007716 ORTHO05D009780 8.5e-57 224.2 188 68.1
Aa31LG1G17430 Aethionema arabicum HOM05D007716 ORTHO05D009780 2.3e-54 216.1 190 60.5
THA.LOC104799649 Tarenaya hassleriana HOM05D007716 ORTHO05D009780 7.2e-48 194.5 193 60.6
QL11p026900 Quercus lobata HOM05D007716 ORTHO05D009780 1.4e-27 127.1 176 44.3
Manes.10G092200 Manihot esculenta HOM05D007716 ORTHO05D009780 1.1e-24 117.5 136 46.3
Ciclev10029299m.g Citrus clementina HOM05D007716 ORTHO05D009780 1.5e-24 117.1 184 39.1
PGR142G1403 Punica granatum HOM05D007716 ORTHO05D009780 5.5e-24 115.2 126 46.8
Duzib132G0367 Durio zibethinus HOM05D007716 ORTHO05D009780 9.5e-24 114.4 126 49.2
Gorai.008G042500 Gossypium raimondii HOM05D007716 ORTHO05D009780 1.2e-23 114.0 126 50.0
Potri.001G286200 Populus trichocarpa HOM05D007716 ORTHO05D009780 1.2e-23 114.0 127 51.2
Haze_10368 Corylus avellana HOM05D007716 ORTHO05D009780 2.1e-23 113.2 161 43.5
Gohir.D12G040700 Gossypium hirsutum HOM05D007716 ORTHO05D009780 4.7e-23 112.1 126 49.2
PGSC0003DMG400003116 Solanum tuberosum HOM05D007716 ORTHO05D009780 6.1e-23 111.7 124 45.2
Gohir.A12G031600 Gossypium hirsutum HOM05D007716 ORTHO05D009780 8.0e-23 111.3 126 49.2
Hma1.2p1_0703F.1_g206280 Hydrangea macrophylla HOM05D007716 ORTHO05D009780 8.0e-23 111.3 124 48.4
Thecc.02G037300 Theobroma cacao HOM05D007716 ORTHO05D009780 1.8e-22 110.2 127 48.0
CiPaw.05G026000 Carya illinoinensis HOM05D007716 ORTHO05D009780 2.3e-22 109.8 124 49.2
Solyc01g106380.2 Solanum lycopersicum HOM05D007716 ORTHO05D009780 2.3e-22 109.8 124 45.2
COL.COLO4_17851 Corchorus olitorius HOM05D007716 ORTHO05D009780 3.0e-22 109.4 138 44.9
Potri.009G080400 Populus trichocarpa HOM05D007716 ORTHO05D009780 6.8e-22 108.2 137 47.4
Nn5g29758 Nelumbo nucifera HOM05D007716 ORTHO05D009780 1.2e-21 107.5 124 45.2
Nitab4.5_0010352g0060 Nicotiana tabacum HOM05D007716 ORTHO05D009780 1.2e-21 107.5 124 45.2
Peaxi162Scf00299g00026 Petunia axillaris HOM05D007716 ORTHO05D009780 1.2e-21 107.5 125 44.8
Sopen01g048750 Solanum pennellii HOM05D007716 ORTHO05D009780 1.5e-21 107.1 124 43.5
Nitab4.5_0009020g0070 Nicotiana tabacum HOM05D007716 ORTHO05D009780 2.0e-21 106.7 124 44.4
Sabra16G0178700 Salix brachista HOM05D007716 ORTHO05D009780 2.6e-21 106.3 127 46.5
DCAR_029284 Daucus carota HOM05D007716 ORTHO05D009780 3.4e-21 105.9 123 45.5
ClCG10G009750 Citrullus lanatus HOM05D007716 ORTHO05D009780 5.7e-21 105.1 126 48.4
PSO210G3893 Papaver somniferum HOM05D007716 ORTHO05D009780 5.7e-21 105.1 129 45.7
Prupe.8G076600 Prunus persica HOM05D007716 ORTHO05D009780 9.8e-21 104.4 126 45.2
PSO761G0345 Papaver somniferum HOM05D007716 ORTHO05D009780 1.3e-20 104.0 129 45.0
TWI23G0541 Tripterygium wilfordii HOM05D007716 ORTHO05D009780 2.2e-20 103.2 128 45.3
TAR628G0805 Trochodendron aralioides HOM05D007716 ORTHO05D009780 3.7e-20 102.4 124 49.2
AUR62027073 Chenopodium quinoa HOM05D007716 ORTHO05D009780 8.3e-20 101.3 134 42.5
AUR62043644 Chenopodium quinoa HOM05D007716 ORTHO05D009780 8.3e-20 101.3 134 39.6
Sabra09G0062200 Salix brachista HOM05D007716 ORTHO05D009780 8.3e-20 101.3 137 42.3
Migut.B00514 Erythranthe guttata HOM05D007716 ORTHO05D009780 1.1e-19 100.9 130 42.3
MBI16_g17833_MAGBIO Magnolia biondii HOM05D007716 ORTHO05D009780 1.1e-19 100.9 94 53.2
Cpa.g.sc20.53 Carica papaya HOM05D007716 ORTHO05D009780 1.4e-19 100.5 125 44.8
Lj6g0015505 Lotus japonicus HOM05D007716 ORTHO05D009780 1.4e-19 100.5 124 46.8
Atru.chr6.1374 Acer truncatum HOM05D007716 ORTHO05D009780 2.4e-19 99.8 122 45.1
Ah.01g024230 Amaranthus hybridus HOM05D007716 ORTHO05D009780 3.1e-19 99.4 132 37.1
MD10G1057800 Malus domestica HOM05D007716 ORTHO05D009780 3.1e-19 99.4 125 40.8
MSTRG.16641 Avicennia marina HOM05D007716 ORTHO05D009780 4.1e-19 99.0 129 46.5
Cc02_g20520 Coffea canephora HOM05D007716 ORTHO05D009780 5.4e-19 98.6 124 43.5
FvH4_2g11070 Fragaria vesca HOM05D007716 ORTHO05D009780 7.0e-19 98.2 129 41.9
FAN15G0824 Fragaria x ananassa HOM05D007716 ORTHO05D009780 1.6e-18 97.1 129 41.1
RcHm_v2.0_Chr6g0269271 Rosa chinensis HOM05D007716 ORTHO05D009780 1.6e-18 97.1 137 43.1
Sed0024047 Sechium edule HOM05D007716 ORTHO05D009780 2.7e-18 96.3 135 45.9
Glyma.15G060900 Glycine max HOM05D007716 ORTHO05D009780 3.5e-18 95.9 124 41.1
CANSAT54G1223 Cannabis sativa HOM05D007716 ORTHO05D009780 7.8e-18 94.7 123 39.8
FAN20G1331 Fragaria x ananassa HOM05D007716 ORTHO05D009780 1.3e-17 94.0 129 40.3
FAN24G2612 Fragaria x ananassa HOM05D007716 ORTHO05D009780 1.7e-17 93.6 129 40.3
Glyma.13G254000 Glycine max HOM05D007716 ORTHO05D009780 1.7e-17 93.6 124 41.1
VMungo0540G1513 Vigna mungo HOM05D007716 ORTHO05D009780 2.3e-17 93.2 124 40.3
Lalb_Chr20g0122741 Lupinus albus HOM05D007716 ORTHO05D009780 3.9e-17 92.4 160 36.2
Sc14g0003580 Simmondsia chinensis HOM05D007716 ORTHO05D009780 5.0e-17 92.0 121 41.3
Aqoxy6G00623 Aquilegia oxysepala HOM05D000043 ORTHO05D002888 8.6e-17 91.3 125 44.0
Phvul.006G198900 Phaseolus vulgaris HOM05D007716 ORTHO05D009780 1.1e-16 90.9 124 38.7
CsaV3_4G014630 Cucumis sativus L. HOM05D007716 ORTHO05D009780 1.9e-16 90.1 84 54.8
Oeu059885.1 Olea europaea HOM05D007716 ORTHO05D009780 2.5e-16 89.7 100 45.0
FAN27G0331 Fragaria x ananassa HOM05D007716 ORTHO05D009780 4.3e-16 89.0 129 39.5
vmacro01903 Vaccinium macrocarpon HOM05D001206 ORTHO05D002068 7.3e-16 88.2 140 45.0
Eucgr.I02564 Eucalyptus grandis HOM05D007716 ORTHO05D009780 1.6e-15 87.0 128 36.7
unitig_61.g26045 Utricularia gibba HOM05D007716 ORTHO05D009780 2.1e-15 86.7 119 41.2
Lsat_1_v5_gn_7_83180 Lactuca sativa HOM05D007716 ORTHO05D009780 2.3e-14 83.2 126 41.3
Eucgr.I02552 Eucalyptus grandis HOM05D007716 ORTHO05D009780 3.1e-14 82.8 94 41.5
TPR.G32644 Trifolium pratense HOM05D007716 ORTHO05D009780 5.2e-14 82.0 151 33.8
SalBow6G6774 Salvia bowleyana HOM05D007716 ORTHO05D009780 2.0e-13 80.1 131 36.6
CDE04G3440 Ceratophyllum demersum HOM05D000620 ORTHO05D000537 4.4e-13 79.0 88 42.0
Ca_00186_v3 Cicer arietinum L. HOM05D007716 ORTHO05D009780 5.8e-13 78.6 188 34.0
arahy.Tifrunner.gnm1.ann1.1SXR49 Arachis hypogaea HOM05D007716 ORTHO05D009780 9.8e-13 77.8 155 32.9
arahy.Tifrunner.gnm1.ann1.84YYIV Arachis hypogaea HOM05D007716 ORTHO05D009780 9.8e-13 77.8 154 33.1
SGA_v2.0_scaffold342G49411 Striga asiatica HOM05D007716 ORTHO05D009780 1.7e-12 77.0 163 28.8
ECA236G5147 Erigeron canadensis HOM05D007716 ORTHO05D009780 6.4e-12 75.1 106 34.9
Medtr2g010200 Medicago truncatula HOM05D007716 ORTHO05D009780 1.9e-11 73.6 96 36.5
Psat1g212560 Pisum sativum HOM05D007716 ORTHO05D009780 1.9e-11 73.6 122 36.9
Lj9P341T42 Lonicera japonica HOM05D007716 ORTHO05D009780 3.2e-11 72.8 70 42.9
Actinidia02415 Actinidia chinensis HOM05D007716 ORTHO05D009780 7.0e-11 71.6 80 50.0
Peaxi162Scf00299g00025 Petunia axillaris HOM05D007716 ORTHO05D009780 2.7e-10 69.7 63 49.2
ATR0767G063 Amborella trichopoda HOM05D007716 ORTHO05D009780 3.5e-10 69.3 102 40.2
Dinv08960 Davidia involucrata HOM05D007716 ORTHO05D009780 3.3e-08 62.8 66 47.0


User provided reference genes

Program Settings