Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s2522 Capsella rubella HOM05D004672 ORTHO05D005732 0.0e+00 2452.2 1307 100.0
AT5G64420 Arabidopsis thaliana HOM05D004672 ORTHO05D005732 0.0e+00 2129.8 1309 87.8
AL8G41790 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 0.0e+00 2114.7 1316 86.9
CARHR278390 Cardamine hirsuta HOM05D004672 ORTHO05D005732 0.0e+00 2025.0 1321 84.0
Sp2g27510 Schrenkiella parvula HOM05D004672 ORTHO05D005732 0.0e+00 2007.3 1315 83.6
Thhalv10003522m.g Eutrema salsugineum HOM05D004672 ORTHO05D005732 0.0e+00 2005.3 1190 89.5
C03p61860 Brassica napus HOM05D004672 ORTHO05D005732 0.0e+00 1941.4 1188 87.3
BolC3t18446H Brassica oleracea HOM05D004672 ORTHO05D005732 0.0e+00 1941.4 1188 87.3
BraA06t26051Z Brassica rapa HOM05D004672 ORTHO05D005732 0.0e+00 1920.6 1314 80.8
Aa31LG1G17480 Aethionema arabicum HOM05D004672 ORTHO05D005732 0.0e+00 1916.4 1309 79.4
A06p31080 Brassica napus HOM05D004672 ORTHO05D005732 0.0e+00 1905.2 1313 80.2
THA.LOC104799703 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 0.0e+00 1736.1 1189 76.2
THA.LOC104818461 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 0.0e+00 1621.7 1318 67.1
Manes.10G094200 Manihot esculenta HOM05D004672 ORTHO05D005732 0.0e+00 1496.1 1313 62.8
Ciclev10027696m.g Citrus clementina HOM05D004672 ORTHO05D005732 0.0e+00 1473.8 1252 63.2
CSS0000676 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 0.0e+00 1463.7 1353 61.1
CiPaw.06G160900 Carya illinoinensis HOM05D004672 ORTHO05D005732 0.0e+00 1456.8 1342 58.9
Cfa004803 Carpinus fangiana HOM05D004672 ORTHO05D005732 0.0e+00 1453.7 1269 62.6
Thecc.02G125000 Theobroma cacao HOM05D004672 ORTHO05D005732 0.0e+00 1451.8 1326 59.5
Actinidia02411 Actinidia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1448.0 1250 63.4
CSS0013617 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 0.0e+00 1436.4 1313 61.8
Duzib132G0551 Durio zibethinus HOM05D004672 ORTHO05D005732 0.0e+00 1432.5 1264 61.2
Lj9C342T12 Lonicera japonica HOM05D004672 ORTHO05D005732 0.0e+00 1428.7 1311 59.8
Gohir.D13G048000 Gossypium hirsutum HOM05D004672 ORTHO05D005732 0.0e+00 1425.6 1307 59.4
Potri.009G079900 Populus trichocarpa HOM05D004672 ORTHO05D005732 0.0e+00 1425.6 1338 59.4
QL11p026607 Quercus lobata HOM05D004672 ORTHO05D005732 0.0e+00 1422.1 1379 59.0
Sed0014665 Sechium edule HOM05D004672 ORTHO05D005732 0.0e+00 1412.1 1313 58.4
Gorai.013G053600 Gossypium raimondii HOM05D004672 ORTHO05D005732 0.0e+00 1409.8 1307 59.2
vmacro19391 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 0.0e+00 1409.0 1261 61.3
TWI59G0488 Tripterygium wilfordii HOM05D004672 ORTHO05D005732 0.0e+00 1407.1 1215 60.7
Potri.001G285600 Populus trichocarpa HOM05D004672 ORTHO05D005732 0.0e+00 1401.3 1270 61.0
RcHm_v2.0_Chr6g0269481 Rosa chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1399.0 1185 61.7
MD10G1056900 Malus domestica HOM05D004672 ORTHO05D005732 0.0e+00 1398.3 1316 57.7
FvH4_2g11160 Fragaria vesca HOM05D004672 ORTHO05D005732 0.0e+00 1397.9 1206 61.5
Glyma.13G254600 Glycine max HOM05D004672 ORTHO05D005732 0.0e+00 1396.7 1251 60.0
Lalb_Chr18g0060301 Lupinus albus HOM05D004672 ORTHO05D005732 0.0e+00 1396.3 1257 60.5
GSVIVG01038520001 Vitis vinifera HOM05D004672 ORTHO05D005732 0.0e+00 1395.6 1253 61.9
Gohir.A13G049500 Gossypium hirsutum HOM05D004672 ORTHO05D005732 0.0e+00 1392.9 1305 58.4
Sabra09G0061900 Salix brachista HOM05D004672 ORTHO05D005732 0.0e+00 1392.1 1280 60.6
ClCG09G016480 Citrullus lanatus HOM05D004672 ORTHO05D005732 0.0e+00 1391.7 1313 58.8
Glyma.15G060100 Glycine max HOM05D004672 ORTHO05D005732 0.0e+00 1384.0 1216 61.7
MSTRG.16633 Avicennia marina HOM05D004672 ORTHO05D005732 0.0e+00 1383.6 1249 59.7
MD05G1049800 Malus domestica HOM05D004672 ORTHO05D005732 0.0e+00 1381.7 1204 60.3
Sabra16G0178000 Salix brachista HOM05D004672 ORTHO05D005732 0.0e+00 1380.5 1316 59.6
Hma1.2p1_0908F.1_g235670 Hydrangea macrophylla HOM05D004672 ORTHO05D005732 0.0e+00 1375.1 1341 58.2
Sed0001753 Sechium edule HOM05D004672 ORTHO05D005732 0.0e+00 1374.4 1315 57.4
Prupe.8G075100 Prunus persica HOM05D004672 ORTHO05D005732 0.0e+00 1372.8 1307 57.2
Eucgr.I02582 Eucalyptus grandis HOM05D004672 ORTHO05D005732 0.0e+00 1367.1 1262 60.1
Hund06479 Selenicereus undatus HOM05D004672 ORTHO05D005732 0.0e+00 1366.7 1257 57.8
CANSAT54G0310 Cannabis sativa HOM05D004672 ORTHO05D005732 0.0e+00 1360.9 1233 59.4
TAR628G0793 Trochodendron aralioides HOM05D004672 ORTHO05D005732 0.0e+00 1360.1 1328 57.8
EL10Ac9g22127 Beta vulgaris HOM05D004672 ORTHO05D005732 0.0e+00 1358.2 1312 57.6
Phvul.006G199700 Phaseolus vulgaris HOM05D004672 ORTHO05D005732 0.0e+00 1358.2 1308 57.6
FAN24G1132 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1356.7 1204 60.5
VMungo0540G1852 Vigna mungo HOM05D004672 ORTHO05D005732 0.0e+00 1354.3 1279 57.6
Ca_00181_v3 Cicer arietinum L. HOM05D004672 ORTHO05D005732 0.0e+00 1353.6 1218 59.6
CsaV3_7G007430 Cucumis sativus L. HOM05D004672 ORTHO05D005732 0.0e+00 1351.7 1310 57.6
FAN15G2368 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1351.3 1263 58.7
Haze_10395 Corylus avellana HOM05D004672 ORTHO05D005732 0.0e+00 1350.9 1379 56.0
Psat1g212840 Pisum sativum HOM05D004672 ORTHO05D005732 0.0e+00 1349.3 1255 58.4
DCAR_021895 Daucus carota HOM05D004672 ORTHO05D005732 0.0e+00 1347.4 1247 59.5
MELO3C018559.2 Cucumis melo HOM05D004672 ORTHO05D005732 0.0e+00 1346.3 1313 58.2
FAN20G2876 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1341.6 1211 59.5
Medtr2g010110 Medicago truncatula HOM05D004672 ORTHO05D005732 0.0e+00 1340.5 1310 58.6
FAN27G2619 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1335.1 1251 58.4
Cc02_g20590 Coffea canephora HOM05D004672 ORTHO05D005732 0.0e+00 1334.3 1311 57.7
Nn1g07286 Nelumbo nucifera HOM05D004672 ORTHO05D005732 0.0e+00 1333.5 1292 57.6
AUR62027080 Chenopodium quinoa HOM05D004672 ORTHO05D005732 0.0e+00 1333.2 1306 57.4
arahy.Tifrunner.gnm1.ann1.BVLY6P Arachis hypogaea HOM05D004672 ORTHO05D005732 0.0e+00 1330.9 1308 56.2
Migut.B00522 Erythranthe guttata HOM05D004672 ORTHO05D005732 0.0e+00 1329.7 1331 57.5
AUR62030919 Chenopodium quinoa HOM05D004672 ORTHO05D005732 0.0e+00 1327.8 1306 57.5
arahy.Tifrunner.gnm1.ann1.GE1IDC Arachis hypogaea HOM05D004672 ORTHO05D005732 0.0e+00 1325.8 1264 58.2
Lj6g0005540 Lotus japonicus HOM05D004672 ORTHO05D005732 0.0e+00 1317.0 1324 57.7
ECA240G2418 Erigeron canadensis HOM05D004672 ORTHO05D005732 0.0e+00 1303.1 1305 56.6
Nitab4.5_0005163g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1298.1 1245 58.1
PGR142G1680 Punica granatum HOM05D004672 ORTHO05D005732 0.0e+00 1297.3 1247 59.3
SalBow6G5524 Salvia bowleyana HOM05D004672 ORTHO05D005732 0.0e+00 1296.6 1321 55.7
Nitab4.5_0002335g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1295.4 1234 57.6
HanXRQChr03g0071051 Helianthus annuus HOM05D004672 ORTHO05D005732 0.0e+00 1293.5 1317 56.0
Aqoxy6G00637 Aquilegia oxysepala HOM05D004672 ORTHO05D005732 0.0e+00 1290.0 1256 56.8
Lsat_1_v5_gn_9_113760 Lactuca sativa HOM05D004672 ORTHO05D005732 0.0e+00 1276.5 1323 55.4
CAN.G504.43 Capsicum annuum HOM05D004672 ORTHO05D005732 0.0e+00 1274.2 1304 54.7
Lsat_1_v5_gn_9_113661 Lactuca sativa HOM05D004672 ORTHO05D005732 0.0e+00 1272.3 1323 55.3
SGA_v2.0_scaffold83G26394 Striga asiatica HOM05D004672 ORTHO05D005732 0.0e+00 1263.4 1336 54.3
Solyc01g106220.4 Solanum lycopersicum HOM05D004672 ORTHO05D005732 0.0e+00 1260.0 1267 56.0
Sopen01g048630 Solanum pennellii HOM05D004672 ORTHO05D005732 0.0e+00 1259.6 1263 55.2
Sc06g0005830 Simmondsia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1221.8 1093 60.7
Oeu033795.2 Olea europaea HOM05D004672 ORTHO05D005732 0.0e+00 1209.5 1310 52.0
Oeu042393.4 Olea europaea HOM05D004672 ORTHO05D005732 0.0e+00 1204.9 1273 53.2
PGSC0003DMG400010676 Solanum tuberosum HOM05D004672 ORTHO05D005732 0.0e+00 1196.4 1257 54.3
MBI16_g10454_MAGBIO Magnolia biondii HOM05D004672 ORTHO05D005732 0.0e+00 1188.7 1337 51.6
PSO478G3191 Papaver somniferum HOM05D004672 ORTHO05D005732 0.0e+00 1182.9 1267 53.4
TPR.G32637 Trifolium pratense HOM05D004672 ORTHO05D005732 0.0e+00 1173.3 1344 51.1
PSO017G1610 Papaver somniferum HOM05D004672 ORTHO05D005732 0.0e+00 1160.6 1182 54.6
Duzib132G1253 Durio zibethinus HOM05D004672 ORTHO05D005732 0.0e+00 1114.8 1252 51.7
Peaxi162Scf00016g03257 Petunia axillaris HOM05D004672 ORTHO05D005732 0.0e+00 1084.3 1289 48.6
Peaxi162Scf00016g03462 Petunia axillaris HOM05D004672 ORTHO05D005732 0.0e+00 1077.4 1276 48.9
SHI04921 Sapria himalayana HOM05D004672 ORTHO05D005732 2.8e-308 1062.4 1193 49.2
Actinidia00323 Actinidia chinensis HOM05D004672 ORTHO05D005732 5.4e-307 1058.1 963 61.9
Nitab4.5_0005163g0030 Nicotiana tabacum HOM05D004672 ORTHO05D005732 1.8e-299 1033.1 1235 49.3
unitig_744.g24197 Utricularia gibba HOM05D004672 ORTHO05D005732 9.2e-299 1030.8 1244 48.1
CDE05G2025 Ceratophyllum demersum HOM05D004672 ORTHO05D005732 7.8e-298 1027.7 1286 46.3
Ah.01g024170 Amaranthus hybridus HOM05D004672 ORTHO05D005732 5.0e-297 1025.0 1141 53.5
HPP92_024099 Vanilla planifolia HOM05D004672 ORTHO05D005732 4.7e-287 991.9 1372 44.1
ATR0800G038 Amborella trichopoda HOM05D004672 ORTHO05D005732 1.1e-286 990.7 1272 45.4
Zm00001eb231630 Zea mays HOM05D004672 ORTHO05D005732 1.7e-276 956.8 1242 46.3
Os02g0135700 Oryza sativa ssp. japonica HOM05D004672 ORTHO05D005732 4.1e-275 952.2 1250 44.3
Dinv08968 Davidia involucrata HOM05D004672 ORTHO05D005732 1.5e-256 890.6 768 62.8
Cpa.g.sc20.40 Carica papaya HOM05D004672 ORTHO05D005732 8.4e-236 821.6 1317 40.9
Atru.chr6.1353 Acer truncatum HOM05D004672 ORTHO05D005732 7.4e-224 781.9 721 58.7
BcaB07g29742 Brassica carinata HOM05D004672 ORTHO05D005732 2.5e-211 740.3 707 64.6
SEGI_31749 Sequoiadendron giganteum HOM05D004672 ORTHO05D005732 1.4e-209 734.6 1121 40.4
BcaC03g18261 Brassica carinata HOM05D004672 ORTHO05D005732 5.3e-206 722.6 623 65.2
Atru.chr6.1354 Acer truncatum HOM05D004672 ORTHO05D005732 9.5e-171 605.5 537 63.1
C02p63340 Brassica napus HOM05D004672 ORTHO05D005732 3.2e-166 590.5 1062 41.8
BolC2t12404H Brassica oleracea HOM05D004672 ORTHO05D005732 8.1e-154 549.3 1057 40.2
Dinv16031 Davidia involucrata HOM05D004672 ORTHO05D005732 3.4e-152 543.9 443 63.0
Dinv08967 Davidia involucrata HOM05D004672 ORTHO05D005732 5.4e-150 536.6 458 61.1
Pp3c3_9940 Physcomitrium patens HOM05D004672 ORTHO05D005732 1.6e-146 525.0 1239 34.2
Dinv16032 Davidia involucrata HOM05D004672 ORTHO05D005732 1.2e-144 518.8 540 54.6
Pp3c13_11570 Physcomitrium patens HOM05D004672 ORTHO05D005732 1.7e-143 515.0 1237 33.1
AagrBONN_evm.TU.Sc2ySwM_368.3324__3325 Anthoceros agrestis HOM05D004672 ORTHO05D005732 6.6e-140 503.1 1240 31.9
AagrBONN_evm.TU.Sc2ySwM_228.3115__3116 Anthoceros agrestis HOM05D004672 ORTHO05D005732 1.5e-139 501.9 1219 31.3
vmacro06228 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 1.4e-137 495.4 830 43.3
AL8G35270 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 3.8e-127 460.7 247 92.7
SMO358G0564 Selaginella moellendorffii HOM05D004672 ORTHO05D005732 1.1e-126 459.1 1245 30.6
Mapoly0136s0021 Marchantia polymorpha HOM05D004672 ORTHO05D005732 1.2e-125 455.7 1307 29.8
BcaC03g18262 Brassica carinata HOM05D004672 ORTHO05D005732 2.1e-117 428.3 333 69.1
CBR_g52045 Chara braunii HOM05D004672 ORTHO05D005732 2.3e-92 345.1 1324 26.6
Gorai.005G227500 Gossypium raimondii HOM05D004672 ORTHO05D005732 1.2e-64 253.1 527 34.0
Gohir.D02G202550 Gossypium hirsutum HOM05D004672 ORTHO05D005732 3.9e-63 248.1 556 33.6
MCO10G087 Micromonas commoda HOM05D004672 ORTHO05D005732 4.9e-42 177.9 1225 23.4
Nitab4.5_0001405g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 7.8e-40 170.6 216 44.0
C02p63360 Brassica napus HOM05D004672 ORTHO05D005732 1.6e-37 162.9 133 63.9
Cre01.g012350 Chlamydomonas reinhardtii HOM05D004672 ORTHO05D005732 7.3e-30 137.5 1268 23.6
Manes.10G093300 Manihot esculenta HOM05D004672 ORTHO05D005732 4.4e-27 128.3 142 54.9
Nitab4.5_0001405g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 7.1e-25 120.9 129 49.6
Psat5g050320 Pisum sativum HOM05D004672 ORTHO05D005732 3.5e-24 118.6 90 66.7
C02p63350 Brassica napus HOM05D004672 ORTHO05D005732 1.7e-23 116.3 76 71.1
BraA02t09256Z Brassica rapa HOM05D004672 ORTHO05D005732 1.1e-22 113.6 75 70.7
Nitab4.5_0003026g0050 Nicotiana tabacum HOM05D004672 ORTHO05D005732 9.6e-22 110.5 109 55.0
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 3.8e-18 98.6 87 64.4
RcHm_v2.0_Chr1g0357401 Rosa chinensis HOM05D004672 ORTHO05D346782 7.9e-16 90.9 188 33.0
Medtr2g086320 Medicago truncatula HOM05D004672 ORTHO05D005732 3.0e-15 89.0 124 48.4
Nn8g41203 Nelumbo nucifera HOM05D004672 ORTHO05D005732 3.3e-14 85.5 71 53.5
Nitab4.5_0001405g0040 Nicotiana tabacum HOM05D004672 ORTHO05D005732 3.3e-14 85.5 120 46.7
Nn2g13574 Nelumbo nucifera HOM05D004672 ORTHO05D005732 4.3e-14 85.1 61 72.1
Lsat_1_v5_gn_8_42860 Lactuca sativa HOM05D004672 ORTHO05D005732 9.0e-12 77.4 72 56.9
Psat0s7528g0040 Pisum sativum HOM05D003881 ORTHO05D004343 1.5e-11 76.6 52 69.2
Psat1g034120 Pisum sativum HOM05D003881 ORTHO05D004343 1.5e-11 76.6 52 69.2
Zm00001eb156660 Zea mays HOM05D004672 ORTHO05D005732 4.5e-11 75.1 84 41.7
Solyc01g106270.1 Solanum lycopersicum HOM05D004672 ORTHO05D005732 1.6e-08 66.6 227 29.1
arahy.Tifrunner.gnm1.ann1.F8N9WK Arachis hypogaea HOM05D000158 ORTHO05D000197 1.1e-06 60.5 83 42.2
SGA_v2.0_scaffold32G12947 Striga asiatica HOM05D004672 ORTHO05D005732 3.3e-06 58.9 92 42.4
unitig_21.g20701 Utricularia gibba HOM05D004672 ORTHO05D005732 7.4e-06 57.8 49 57.1


User provided reference genes

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