Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s2497 Capsella rubella HOM05D006161 ORTHO05D007483 3.5e-75 285.0 159 100.0
AL8G41450 Arabidopsis lyrata HOM05D006161 ORTHO05D007483 1.0e-71 273.5 159 95.6
AT5G64180 Arabidopsis thaliana HOM05D006161 ORTHO05D007483 2.3e-71 272.3 159 95.6
CARHR278090 Cardamine hirsuta HOM05D006161 ORTHO05D007483 3.0e-71 271.9 159 95.6
Thhalv10005060m.g Eutrema salsugineum HOM05D006161 ORTHO05D007483 3.0e-71 271.9 157 96.2
Sp2g27240 Schrenkiella parvula HOM05D006161 ORTHO05D007483 3.0e-71 271.9 159 95.6
BolC3t18468H Brassica oleracea HOM05D006161 ORTHO05D007483 8.8e-71 270.4 159 94.3
BcaB02g09779 Brassica carinata HOM05D006161 ORTHO05D007483 1.2e-70 270.0 159 94.3
C03p62070 Brassica napus HOM05D006161 ORTHO05D007483 4.4e-70 268.1 159 93.7
A09p08560 Brassica napus HOM05D006161 ORTHO05D007483 5.7e-70 267.7 157 94.9
C09p09680 Brassica napus HOM05D006161 ORTHO05D007483 1.3e-69 266.5 157 93.6
BraA09t36505Z Brassica rapa HOM05D006161 ORTHO05D007483 1.3e-69 266.5 157 94.3
BolC9t53879H Brassica oleracea HOM05D006161 ORTHO05D007483 2.2e-69 265.8 156 94.2
BraA06t26029Z Brassica rapa HOM05D006161 ORTHO05D007483 1.4e-68 263.1 159 91.8
BcaC01g02675 Brassica carinata HOM05D006161 ORTHO05D007483 4.5e-67 258.1 159 91.2
Aa31LG1G17750 Aethionema arabicum HOM05D006161 ORTHO05D007483 1.2e-64 250.0 149 93.3
THA.LOC104799966 Tarenaya hassleriana HOM05D006161 ORTHO05D007483 8.8e-63 243.8 153 87.6
A06p30900 Brassica napus HOM05D006161 ORTHO05D007483 4.5e-59 231.5 159 82.4
Atru.chr12.1730 Acer truncatum HOM05D006161 ORTHO05D007483 1.5e-54 216.5 154 76.6
Manes.14G166201 Manihot esculenta HOM05D006161 ORTHO05D007483 4.4e-54 214.9 142 81.7
PGR142G0837 Punica granatum HOM05D006161 ORTHO05D007483 4.4e-54 214.9 149 77.9
Ciclev10029442m.g Citrus clementina HOM05D006161 ORTHO05D007483 2.2e-53 212.6 154 74.7
Potri.012G022200 Populus trichocarpa HOM05D006161 ORTHO05D007483 1.8e-52 209.5 149 75.2
TWI14G1433 Tripterygium wilfordii HOM05D006161 ORTHO05D007483 4.1e-52 208.4 154 75.3
arahy.Tifrunner.gnm1.ann1.6D7HHK Arachis hypogaea HOM05D006161 ORTHO05D007483 1.2e-51 206.8 149 74.5
arahy.Tifrunner.gnm1.ann1.75PVJ4 Arachis hypogaea HOM05D006161 ORTHO05D007483 1.2e-51 206.8 149 74.5
Medtr4g094242 Medicago truncatula HOM05D006161 ORTHO05D007483 1.2e-51 206.8 144 77.1
Sed0024565 Sechium edule HOM05D006161 ORTHO05D007483 1.2e-51 206.8 149 76.5
MD05G1163200 Malus domestica HOM05D006161 ORTHO05D007483 1.6e-51 206.5 149 77.9
Nitab4.5_0003858g0050 Nicotiana tabacum HOM05D006161 ORTHO05D007483 2.0e-51 206.1 148 76.4
Prupe.8G061800 Prunus persica HOM05D006161 ORTHO05D007483 2.0e-51 206.1 156 73.1
MD10G1152800 Malus domestica HOM05D006161 ORTHO05D007483 2.7e-51 205.7 149 77.9
EL10Ac9g21470 Beta vulgaris HOM05D006161 ORTHO05D007483 3.5e-51 205.3 155 72.3
CsaV3_7G006450 Cucumis sativus L. HOM05D006161 ORTHO05D007483 3.5e-51 205.3 149 75.2
Eucgr.I02667 Eucalyptus grandis HOM05D006161 ORTHO05D007483 3.5e-51 205.3 148 76.4
Hund06386 Selenicereus undatus HOM05D006161 ORTHO05D007483 3.5e-51 205.3 153 71.2
Sopen01g047660 Solanum pennellii HOM05D006161 ORTHO05D007483 3.5e-51 205.3 148 77.0
Nitab4.5_0002576g0040 Nicotiana tabacum HOM05D006161 ORTHO05D007483 4.6e-51 204.9 148 75.0
RcHm_v2.0_Chr3g0485521 Rosa chinensis HOM05D006161 ORTHO05D007483 4.6e-51 204.9 155 75.5
FAN19G1889 Fragaria x ananassa HOM05D006161 ORTHO05D007483 5.9e-51 204.5 153 75.8
MELO3C018647.2 Cucumis melo HOM05D006161 ORTHO05D007483 7.8e-51 204.1 149 75.2
FAN26G2610 Fragaria x ananassa HOM05D006161 ORTHO05D007483 7.8e-51 204.1 155 74.8
Sc18g0006920 Simmondsia chinensis HOM05D006161 ORTHO05D007483 7.8e-51 204.1 145 74.5
CSS0044873 Camellia sinensis var. sinensis HOM05D006161 ORTHO05D007483 1.0e-50 203.8 141 78.7
Peaxi162Scf00001g00019 Petunia axillaris HOM05D006161 ORTHO05D007483 1.0e-50 203.8 153 74.5
AUR62013116 Chenopodium quinoa HOM05D006161 ORTHO05D007483 1.3e-50 203.4 155 71.6
FvH4_1g26050 Fragaria vesca HOM05D006161 ORTHO05D007483 1.7e-50 203.0 149 77.2
FAN28G0148 Fragaria x ananassa HOM05D006161 ORTHO05D007483 1.7e-50 203.0 155 74.2
Sabra15G0004000 Salix brachista HOM05D006161 ORTHO05D007483 1.7e-50 203.0 160 71.2
CAN.G523.74 Capsicum annuum HOM05D006161 ORTHO05D007483 2.3e-50 202.6 149 75.8
Rhsim05G0107700 Rhododendron simsii HOM05D006161 ORTHO05D007483 2.3e-50 202.6 140 77.9
PGSC0003DMG400012586 Solanum tuberosum HOM05D006161 ORTHO05D007483 2.9e-50 202.2 148 75.0
Glyma.05G117900 Glycine max HOM05D006161 ORTHO05D007483 3.9e-50 201.8 145 74.5
FAN23G0154 Fragaria x ananassa HOM05D006161 ORTHO05D007483 5.0e-50 201.4 155 73.5
FAN23G2587 Fragaria x ananassa HOM05D006161 ORTHO05D007483 5.0e-50 201.4 155 73.5
Dinv09035 Davidia involucrata HOM05D006161 ORTHO05D007483 6.6e-50 201.1 156 71.8
Lalb_Chr10g0097811 Lupinus albus HOM05D006161 ORTHO05D007483 6.6e-50 201.1 154 71.4
MD05G1163000 Malus domestica HOM05D006161 ORTHO05D007483 6.6e-50 201.1 149 76.5
Psat7g098400 Pisum sativum HOM05D006161 ORTHO05D007483 6.6e-50 201.1 148 75.0
Solyc01g105130.4 Solanum lycopersicum HOM05D006161 ORTHO05D007483 6.6e-50 201.1 148 75.0
GSVIVG01003100001 Vitis vinifera HOM05D006161 ORTHO05D007483 8.6e-50 200.7 149 74.5
Oeu047362.1 Olea europaea HOM05D006161 ORTHO05D007483 3.3e-49 198.7 150 72.0
SGA_v2.0_scaffold14G07119 Striga asiatica HOM05D006161 ORTHO05D007483 7.3e-49 197.6 146 73.3
SalBow6G1080 Salvia bowleyana HOM05D006161 ORTHO05D007483 9.5e-49 197.2 149 72.5
SalBow6G1732 Salvia bowleyana HOM05D006161 ORTHO05D007483 9.5e-49 197.2 149 72.5
Migut.B00613 Erythranthe guttata HOM05D006161 ORTHO05D007483 1.2e-48 196.8 150 72.7
Actinidia28057 Actinidia chinensis HOM05D004981 ORTHO05D007483 1.6e-48 196.4 146 72.6
vmacro19927 Vaccinium macrocarpon HOM05D006161 ORTHO05D007483 1.6e-48 196.4 140 75.7
VMungo0251G3203 Vigna mungo HOM05D006161 ORTHO05D007483 1.6e-48 196.4 145 72.4
Lsat_1_v5_gn_5_107281 Lactuca sativa HOM05D006161 ORTHO05D007483 2.8e-48 195.7 144 72.2
Glyma.08G072800 Glycine max HOM05D006161 ORTHO05D007483 2.3e-47 192.6 145 71.7
MD00G1096800 Malus domestica HOM05D006161 ORTHO05D007483 2.3e-47 192.6 150 74.7
Aqoxy3G03670 Aquilegia oxysepala HOM05D006161 ORTHO05D007483 3.1e-47 192.2 149 71.1
CANSAT11G1086 Cannabis sativa HOM05D006161 ORTHO05D007483 5.2e-47 191.4 144 70.8
Lj5P240T24 Lonicera japonica HOM05D006161 ORTHO05D007483 8.9e-47 190.7 134 77.6
MSTRG.20298 Avicennia marina HOM05D006161 ORTHO05D007483 1.2e-46 190.3 140 72.1
MSTRG.16580 Avicennia marina HOM05D006161 ORTHO05D007483 2.6e-46 189.1 154 66.9
ECA234G1571 Erigeron canadensis HOM05D006161 ORTHO05D007483 2.6e-46 189.1 144 69.4
Phvul.002G208400 Phaseolus vulgaris HOM05D006161 ORTHO05D007483 3.4e-46 188.7 145 69.7
PSO017G6730 Papaver somniferum HOM05D006161 ORTHO05D007483 5.8e-46 188.0 148 70.3
PSO478G0074 Papaver somniferum HOM05D006161 ORTHO05D007483 5.8e-46 188.0 148 70.3
SHI16526 Sapria himalayana HOM05D006161 ORTHO05D007483 2.9e-45 185.7 140 70.0
HanXRQChr10g0295861 Helianthus annuus HOM05D006161 ORTHO05D007483 4.9e-45 184.9 144 68.1
Cfa005604 Carpinus fangiana HOM05D006161 ORTHO05D007483 1.2e-43 180.3 155 68.4
TAR622G1105 Trochodendron aralioides HOM05D006161 ORTHO05D007483 1.2e-43 180.3 149 68.5
Lj4g0015467 Lotus japonicus HOM05D006161 ORTHO05D007483 4.6e-43 178.3 154 65.6
ATR0177G010 Amborella trichopoda HOM05D006161 ORTHO05D007483 1.0e-42 177.2 149 67.1
Os12g0502100 Oryza sativa ssp. japonica HOM05D006161 ORTHO05D007483 1.0e-42 177.2 145 64.8
CDE04G2984 Ceratophyllum demersum HOM05D006161 ORTHO05D007483 1.1e-41 173.7 146 65.1
ECA236G0554 Erigeron canadensis HOM05D006161 ORTHO05D007483 1.2e-40 170.2 145 60.7
ClCG09G015360 Citrullus lanatus HOM05D006161 ORTHO05D007483 6.2e-40 167.9 149 65.8
Cc02_g21600 Coffea canephora HOM05D006161 ORTHO05D007483 6.2e-40 167.9 150 66.0
Cpa.g.sc42.64 Carica papaya HOM05D006161 ORTHO05D007483 1.8e-39 166.4 152 64.5
CiPaw.05G036100 Carya illinoinensis HOM05D006161 ORTHO05D007483 1.8e-39 166.4 154 64.3
unitig_8.g3487 Utricularia gibba HOM05D006161 ORTHO05D007483 3.7e-37 158.7 212 48.1
Lj6g0024224 Lotus japonicus HOM05D006161 ORTHO05D007483 6.4e-37 157.9 154 61.0
Nn4g23459 Nelumbo nucifera HOM05D006161 ORTHO05D007483 5.4e-36 154.8 148 62.2
Sabra05G0140100 Salix brachista HOM05D006161 ORTHO05D007483 5.4e-36 154.8 131 70.2
QL11p020678 Quercus lobata HOM05D006161 ORTHO05D007483 6.0e-35 151.4 113 76.1
Ca_18349_v3 Cicer arietinum L. HOM05D006161 ORTHO05D007483 1.0e-34 150.6 154 57.1
Gohir.A12G014900 Gossypium hirsutum HOM05D006161 ORTHO05D007483 1.7e-34 149.8 151 60.3
Actinidia00265 Actinidia chinensis HOM05D006161 ORTHO05D007483 3.0e-34 149.1 148 60.8
Haze_10694 Corylus avellana HOM05D006161 ORTHO05D007483 1.5e-33 146.7 112 75.0
Mapoly0094s0011 Marchantia polymorpha HOM05D006161 ORTHO05D007483 5.6e-33 144.8 148 52.0
AagrBONN_evm.TU.Sc2ySwM_117.171 Anthoceros agrestis HOM05D006161 ORTHO05D007483 1.6e-32 143.3 138 53.6
CDE04G3544 Ceratophyllum demersum HOM05D006161 ORTHO05D007483 6.2e-32 141.4 143 57.3
Potri.015G005600 Populus trichocarpa HOM05D006161 ORTHO05D007483 2.3e-31 139.4 143 58.0
TWI14G1282 Tripterygium wilfordii HOM05D006161 ORTHO05D007483 2.3e-31 139.4 175 52.6
Duzib132G0386 Durio zibethinus HOM05D006161 ORTHO05D007483 2.6e-30 136.0 151 57.0
SGA_v2.0_scaffold11G05811 Striga asiatica HOM05D006161 ORTHO05D007483 2.9e-29 132.5 114 64.0
Hma1.2p1_0704F.1_g206700 Hydrangea macrophylla HOM05D006161 ORTHO05D007483 4.9e-29 131.7 111 68.5
DCAR_001788 Daucus carota HOM05D006161 ORTHO05D007483 1.4e-28 130.2 113 63.7
HPP92_024935 Vanilla planifolia HOM05D006161 ORTHO05D007483 3.2e-28 129.0 110 63.6
Thecc.02G139200 Theobroma cacao HOM05D006161 ORTHO05D007483 7.8e-27 124.4 148 54.1
Gohir.D12G015300 Gossypium hirsutum HOM05D006161 ORTHO05D007483 1.0e-26 124.0 151 53.0
Gorai.008G015400 Gossypium raimondii HOM05D006161 ORTHO05D007483 1.0e-26 124.0 151 53.0
SMO116G0092 Selaginella moellendorffii HOM05D006161 ORTHO05D007483 1.0e-26 124.0 141 47.5
Zm00001eb409430 Zea mays HOM05D006161 ORTHO05D007483 1.3e-26 123.6 120 58.3
Zm00001eb138120 Zea mays HOM05D006161 ORTHO05D007483 5.1e-26 121.7 106 63.2
CDE07G1624 Ceratophyllum demersum HOM05D006161 ORTHO05D007483 6.6e-26 121.3 92 75.0
COL.COLO4_13985 Corchorus olitorius HOM05D006161 ORTHO05D007483 5.8e-22 108.2 126 56.3
arahy.Tifrunner.gnm1.ann1.A44469 Arachis hypogaea HOM05D006161 ORTHO05D007483 1.3e-21 107.1 81 75.3
arahy.Tifrunner.gnm1.ann1.HFW61Q Arachis hypogaea HOM05D006161 ORTHO05D007483 1.4e-15 87.0 65 72.3
Pp3c24_330 Physcomitrium patens HOM05D006161 ORTHO05D007483 1.2e-11 73.9 146 36.3
Actinidia23993 Actinidia chinensis HOM05D006161 ORTHO05D007483 3.9e-10 68.9 128 40.6
TPR.G10469 Trifolium pratense HOM05D006161 ORTHO05D007483 5.6e-09 65.1 54 57.4
SalBow1G1176 Salvia bowleyana HOM05D007970 ORTHO05D009943 3.6e-08 62.4 45 66.7
CBR_g70737 Chara braunii HOM05D006161 ORTHO05D007483 4.8e-08 62.0 138 31.2
VMungo0540G0821 Vigna mungo HOM05D006161 ORTHO05D007483 1.4e-07 60.5 44 68.2


User provided reference genes

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