Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s2495 Capsella rubella HOM05D005104 ORTHO05D006614 3.0e-120 435.3 229 100.0
AL8G41430 Arabidopsis lyrata HOM05D005104 ORTHO05D006614 6.9e-109 397.5 229 91.3
AT5G64160 Arabidopsis thaliana HOM05D005104 ORTHO05D006614 1.9e-106 389.4 229 89.1
Sp2g27220 Schrenkiella parvula HOM05D005104 ORTHO05D006614 1.9e-103 379.4 229 87.3
CARHR278070 Cardamine hirsuta HOM05D005104 ORTHO05D006614 3.3e-103 378.6 229 88.2
Thhalv10004872m.g Eutrema salsugineum HOM05D005104 ORTHO05D006614 5.8e-100 367.9 229 85.2
BcaB07g29727 Brassica carinata HOM05D005104 ORTHO05D006614 3.9e-96 355.1 231 84.4
A06p30880 Brassica napus HOM05D005104 ORTHO05D006614 5.7e-95 351.3 230 83.0
BcaB02g09781 Brassica carinata HOM05D005104 ORTHO05D006614 2.8e-94 349.0 230 82.2
BolC3t18470H Brassica oleracea HOM05D005104 ORTHO05D006614 6.9e-93 344.4 230 81.3
C03p62090 Brassica napus HOM05D005104 ORTHO05D006614 9.0e-93 344.0 230 81.3
BcaC01g02673 Brassica carinata HOM05D005104 ORTHO05D006614 2.0e-92 342.8 230 81.3
Aa31LG1G17770 Aethionema arabicum HOM05D005104 ORTHO05D006614 1.0e-88 330.5 248 74.2
BcaC02g09479 Brassica carinata HOM05D002012 ORTHO05D001992 2.3e-88 329.3 216 81.9
BolC9t58698H Brassica oleracea HOM05D005104 ORTHO05D006614 1.1e-85 320.5 223 77.6
C09p58340 Brassica napus HOM05D005104 ORTHO05D006614 1.4e-85 320.1 218 78.0
C06p26800 Brassica napus HOM05D005104 ORTHO05D006614 9.1e-85 317.4 223 78.0
C09p58390 Brassica napus HOM05D005104 ORTHO05D006614 5.9e-84 314.7 217 77.9
BolC6t37855H Brassica oleracea HOM05D005104 ORTHO05D006614 1.0e-83 313.9 223 77.1
BcaC08g45071 Brassica carinata HOM05D005104 ORTHO05D006614 6.5e-83 311.2 223 76.7
C02p46090 Brassica napus HOM05D005104 ORTHO05D006614 5.7e-79 298.1 223 75.3
BraA03t13815Z Brassica rapa HOM05D005104 ORTHO05D006614 1.7e-78 296.6 222 73.9
PGR142G2776 Punica granatum HOM05D005104 ORTHO05D006614 9.7e-63 244.2 245 60.0
Duzib248G0158 Durio zibethinus HOM05D005104 ORTHO05D006614 3.7e-62 242.3 252 59.5
Manes.14G166400 Manihot esculenta HOM05D005104 ORTHO05D006614 2.7e-60 236.1 250 59.6
VMungo0251G0802 Vigna mungo HOM05D005104 ORTHO05D006614 4.5e-60 235.3 247 56.7
Gohir.D04G154400 Gossypium hirsutum HOM05D005104 ORTHO05D006614 1.7e-59 233.4 251 56.2
Gorai.012G141700 Gossypium raimondii HOM05D005104 ORTHO05D006614 1.7e-59 233.4 251 56.2
Psat7g098720 Pisum sativum HOM05D005104 ORTHO05D006614 2.2e-59 233.0 247 57.9
Gohir.A04G113100 Gossypium hirsutum HOM05D005104 ORTHO05D006614 5.0e-59 231.9 253 55.3
Eucgr.I02668 Eucalyptus grandis HOM05D005104 ORTHO05D006614 2.5e-58 229.6 242 58.3
Phvul.002G208000 Phaseolus vulgaris HOM05D005104 ORTHO05D006614 2.5e-58 229.6 247 57.1
Medtr4g094252 Medicago truncatula HOM05D005104 ORTHO05D006614 1.6e-57 226.9 246 56.1
arahy.Tifrunner.gnm1.ann1.V9NXIE Arachis hypogaea HOM05D005104 ORTHO05D006614 3.6e-57 225.7 250 55.6
Dinv24198 Davidia involucrata HOM05D005104 ORTHO05D006614 3.6e-57 225.7 256 57.4
COL.COLO4_20953 Corchorus olitorius HOM05D005104 ORTHO05D006614 6.1e-57 224.9 252 56.7
Thecc.02G140100 Theobroma cacao HOM05D005104 ORTHO05D006614 8.0e-57 224.6 253 56.5
Atru.chr6.1109 Acer truncatum HOM05D005104 ORTHO05D006614 2.3e-56 223.0 241 57.7
arahy.Tifrunner.gnm1.ann1.PH7E5N Arachis hypogaea HOM05D005104 ORTHO05D006614 2.3e-56 223.0 248 54.0
Atru.chr6.1089 Acer truncatum HOM05D005104 ORTHO05D006614 3.0e-56 222.6 242 57.4
Actinidia28058 Actinidia chinensis HOM05D005104 ORTHO05D006614 4.0e-56 222.2 250 56.0
Gohir.A04G112960 Gossypium hirsutum HOM05D005104 ORTHO05D006614 1.2e-55 220.7 205 61.0
TWI59G0245 Tripterygium wilfordii HOM05D005104 ORTHO05D006614 1.2e-55 220.7 245 55.9
CsaV3_7G006430 Cucumis sativus L. HOM05D005104 ORTHO05D006614 2.6e-55 219.5 253 53.4
Ciclev10029197m.g Citrus clementina HOM05D005104 ORTHO05D006614 3.4e-55 219.2 237 54.9
SalBow6G6009 Salvia bowleyana HOM05D005104 ORTHO05D006614 7.5e-55 218.0 248 56.5
SalBow6G6298 Salvia bowleyana HOM05D005104 ORTHO05D006614 7.5e-55 218.0 248 56.5
Lj4g0020611 Lotus japonicus HOM05D005104 ORTHO05D006614 9.8e-55 217.6 244 54.5
MELO3C018651.2 Cucumis melo HOM05D005104 ORTHO05D006614 2.8e-54 216.1 249 55.0
TPR.G10460 Trifolium pratense HOM05D005104 ORTHO05D006614 3.7e-54 215.7 196 64.8
CiPaw.05G036500 Carya illinoinensis HOM05D005104 ORTHO05D006614 6.3e-54 214.9 250 54.0
Migut.N01063 Erythranthe guttata HOM05D005104 ORTHO05D006614 6.3e-54 214.9 235 53.2
Glyma.05G118400 Glycine max HOM05D005104 ORTHO05D006614 6.3e-54 214.9 246 56.1
Glyma.08G073500 Glycine max HOM05D005104 ORTHO05D006614 8.3e-54 214.5 251 54.2
Prupe.8G062400 Prunus persica HOM05D005104 ORTHO05D006614 8.3e-54 214.5 251 54.2
Cpa.g.sc42.74 Carica papaya HOM05D005104 ORTHO05D006614 1.4e-53 213.8 255 52.9
Lalb_Chr10g0097741 Lupinus albus HOM05D005104 ORTHO05D006614 1.4e-53 213.8 249 53.8
GSVIVG01003083001 Vitis vinifera HOM05D005104 ORTHO05D006614 2.4e-53 213.0 256 54.7
FAN27G3119 Fragaria x ananassa HOM05D005104 ORTHO05D006614 4.1e-53 212.2 237 55.3
MSTRG.27791 Avicennia marina HOM05D005104 ORTHO05D006614 9.1e-53 211.1 242 51.7
CSS0037720 Camellia sinensis var. sinensis HOM05D005104 ORTHO05D006614 2.7e-52 209.5 250 54.0
MD10G1051500 Malus domestica HOM05D005104 ORTHO05D006614 2.7e-52 209.5 246 54.5
Hma1.2p1_0522F.1_g171600 Hydrangea macrophylla HOM05D005104 ORTHO05D006614 4.5e-52 208.8 198 58.1
DCAR_001791 Daucus carota HOM05D005104 ORTHO05D006614 5.9e-52 208.4 253 51.8
CANSAT11G2657 Cannabis sativa HOM05D005104 ORTHO05D006614 7.7e-52 208.0 263 49.4
Oeu007957.1 Olea europaea HOM05D005104 ORTHO05D006614 1.3e-51 207.2 246 53.7
Haze_10684 Corylus avellana HOM05D005104 ORTHO05D006614 2.3e-51 206.5 243 53.9
Ca_18345_v3 Cicer arietinum L. HOM05D005104 ORTHO05D006614 3.8e-51 205.7 270 52.2
CDE10G0587 Ceratophyllum demersum HOM05D005104 ORTHO05D006614 6.6e-51 204.9 244 52.5
TAR628G1132 Trochodendron aralioides HOM05D005104 ORTHO05D006614 1.5e-50 203.8 248 52.4
FvH4_2g12710 Fragaria vesca HOM05D005104 ORTHO05D006614 2.5e-50 203.0 238 53.8
SGA_v2.0_scaffold45G17311 Striga asiatica HOM05D005104 ORTHO05D006614 2.5e-50 203.0 254 49.6
RcHm_v2.0_Chr6g0273461 Rosa chinensis HOM05D005104 ORTHO05D006614 3.3e-50 202.6 244 54.1
Cfa005608 Carpinus fangiana HOM05D005104 ORTHO05D006614 1.6e-49 200.3 247 52.2
HanXRQChr10g0295831 Helianthus annuus HOM05D005104 ORTHO05D006614 1.6e-49 200.3 246 50.8
Sed0008592 Sechium edule HOM05D005104 ORTHO05D006614 8.0e-49 198.0 249 50.6
FAN20G1981 Fragaria x ananassa HOM05D005104 ORTHO05D006614 1.0e-48 197.6 240 52.9
QL11p020542 Quercus lobata HOM05D005104 ORTHO05D006614 1.0e-48 197.6 271 48.7
ClCG09G015340 Citrullus lanatus HOM05D005104 ORTHO05D006614 2.3e-48 196.4 273 48.4
THA.LOC104818435 Tarenaya hassleriana HOM05D005104 ORTHO05D006614 3.0e-48 196.1 165 70.3
Nn1g05321 Nelumbo nucifera HOM05D005104 ORTHO05D006614 4.0e-48 195.7 250 51.6
HPP92_006000 Vanilla planifolia HOM05D005104 ORTHO05D006614 5.2e-48 195.3 243 49.8
Lsat_1_v5_gn_5_107140 Lactuca sativa HOM05D005104 ORTHO05D006614 1.2e-47 194.1 246 49.2
PSO781G0266 Papaver somniferum HOM05D005104 ORTHO05D006614 4.4e-47 192.2 259 48.3
PSO541G4381 Papaver somniferum HOM05D005104 ORTHO05D006614 1.7e-46 190.3 258 47.7
Aqoxy6G00597 Aquilegia oxysepala HOM05D005104 ORTHO05D006614 2.2e-46 189.9 265 49.4
vmacro19925 Vaccinium macrocarpon HOM05D005104 ORTHO05D006614 2.2e-46 189.9 291 46.7
Sopen10g017460 Solanum pennellii HOM05D005104 ORTHO05D006614 2.8e-46 189.5 243 49.0
Peaxi162Scf00003g03543 Petunia axillaris HOM05D005104 ORTHO05D006614 6.3e-46 188.3 244 50.8
PGSC0003DMG400017693 Solanum tuberosum HOM05D005104 ORTHO05D006614 6.3e-46 188.3 243 48.6
SEGI_35517 Sequoiadendron giganteum HOM05D005104 ORTHO05D006614 8.3e-46 188.0 254 48.4
Rhsim05G0108500 Rhododendron simsii HOM05D005104 ORTHO05D006614 1.4e-45 187.2 211 53.1
ATR0564G397 Amborella trichopoda HOM05D005104 ORTHO05D006614 3.2e-45 186.0 245 50.2
Potri.003G023601 Populus trichocarpa HOM05D005104 ORTHO05D006614 5.4e-45 185.3 256 47.7
Hund06391 Selenicereus undatus HOM05D005104 ORTHO05D006614 5.4e-45 185.3 233 50.2
ECA234G0341 Erigeron canadensis HOM05D005104 ORTHO05D006614 2.0e-44 183.3 187 54.0
Solyc10g047220.2 Solanum lycopersicum HOM05D005104 ORTHO05D006614 2.7e-44 183.0 243 47.7
Oeu026158.1 Olea europaea HOM05D005104 ORTHO05D006614 8.6e-43 177.9 242 46.3
Cc02_g21630 Coffea canephora HOM05D005104 ORTHO05D006614 3.6e-41 172.6 238 49.6
Sabra01G0157800 Salix brachista HOM05D005104 ORTHO05D006614 3.6e-41 172.6 277 46.6
Os02g0753200 Oryza sativa ssp. japonica HOM05D005104 ORTHO05D006614 4.7e-41 172.2 255 48.2
Lj5A240T40 Lonicera japonica HOM05D005104 ORTHO05D006614 1.0e-40 171.0 136 68.4
GSVIVG01013334001 Vitis vinifera HOM05D005104 ORTHO05D006614 6.8e-40 168.3 138 66.7
Zm00001eb255190 Zea mays HOM05D005104 ORTHO05D006614 1.2e-39 167.5 252 49.6
GSVIVG01003087001 Vitis vinifera HOM05D005104 ORTHO05D006614 2.0e-39 166.8 138 65.9
FAN24G3378 Fragaria x ananassa HOM05D005104 ORTHO05D006614 3.4e-39 166.0 129 66.7
Ah.01g009520 Amaranthus hybridus HOM05D005104 ORTHO05D006614 1.7e-38 163.7 231 46.8
MBI02_g08741_MAGBIO Magnolia biondii HOM05D005104 ORTHO05D006614 2.2e-38 163.3 136 65.4
Hma1.2p1_0522F.1_g171590 Hydrangea macrophylla HOM05D005104 ORTHO05D006614 6.4e-38 161.8 205 48.3
Zm00001eb194200 Zea mays HOM05D005104 ORTHO05D006614 6.4e-38 161.8 250 45.6
AUR62013112 Chenopodium quinoa HOM05D005104 ORTHO05D006614 3.2e-37 159.5 234 47.0
AUR62010117 Chenopodium quinoa HOM05D005104 ORTHO05D006614 9.2e-37 157.9 236 46.6
GSVIVG01003093001 Vitis vinifera HOM05D005104 ORTHO05D006614 1.6e-33 147.1 121 66.9
AagrBONN_evm.TU.Sc2ySwM_117.984 Anthoceros agrestis HOM05D005104 ORTHO05D006614 4.0e-32 142.5 237 43.9
BolC6t38485H Brassica oleracea HOM05D005104 ORTHO05D006614 5.8e-31 138.7 123 68.3
Sc08g0003350 Simmondsia chinensis HOM05D005104 ORTHO05D006614 1.7e-30 137.1 124 59.7
Mapoly0096s0033 Marchantia polymorpha HOM05D005104 ORTHO05D006614 4.9e-30 135.6 252 39.7
Pp3c18_21190 Physcomitrium patens HOM05D005104 ORTHO05D006614 1.1e-29 134.4 241 38.2
BolC4t25904H Brassica oleracea HOM05D005104 ORTHO05D006614 1.9e-29 133.7 71 90.1
SMO117G0229 Selaginella moellendorffii HOM05D005104 ORTHO05D006614 2.1e-28 130.2 183 45.9
A02p26040 Brassica napus HOM05D005104 ORTHO05D006614 3.9e-27 125.9 90 76.7
C07p45690 Brassica napus HOM05D005104 ORTHO05D021970 1.9e-26 123.6 155 54.8
C09p03790 Brassica napus HOM05D005104 ORTHO05D006614 2.8e-25 119.8 156 53.2
C03p52730 Brassica napus HOM05D005104 ORTHO05D021970 8.1e-25 118.2 167 51.5
C05p26840 Brassica napus HOM05D005104 ORTHO05D006614 3.4e-23 112.8 155 52.3
Nitab4.5_0000078g0030 Nicotiana tabacum HOM05D005104 ORTHO05D006614 5.8e-23 112.1 246 39.0
EL10Ac9g21466 Beta vulgaris HOM05D005104 ORTHO05D006614 2.4e-21 106.7 72 72.2
A10p06060 Brassica napus HOM05D005104 ORTHO05D006614 5.1e-19 99.0 78 70.5
unitig_22.g6836 Utricularia gibba HOM05D001058 ORTHO05D000911 1.5e-18 97.4 181 37.0
CAN.G1.36 Capsicum annuum HOM05D005104 ORTHO05D006614 2.4e-16 90.1 171 40.4
CBR_g47116 Chara braunii HOM05D005104 ORTHO05D006614 8.4e-14 81.6 229 30.1
CDE10G1356 Ceratophyllum demersum HOM05D005104 ORTHO05D006614 4.2e-13 79.3 172 37.2
Duzib132G1169 Durio zibethinus HOM05D005104 ORTHO05D006614 9.3e-13 78.2 138 43.5
Nitab4.5_0005015g0050 Nicotiana tabacum HOM05D005104 ORTHO05D006614 1.1e-10 71.2 149 37.6
BolC7t46413H Brassica oleracea HOM05D005104 ORTHO05D006614 1.3e-09 67.8 81 53.1
Cre12.g509300 Chlamydomonas reinhardtii HOM05D005104 ORTHO05D006614 1.2e-07 61.2 189 30.7
Hma1.2p1_0516F.1_g170490 Hydrangea macrophylla HOM05D005104 ORTHO05D006614 9.9e-07 58.2 119 38.7


User provided reference genes

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