Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s2494 Capsella rubella HOM05D006002 ORTHO05D007651 9.3e-220 766.5 378 100.0
AT5G64150 Arabidopsis thaliana HOM05D006002 ORTHO05D007651 7.4e-193 677.2 378 88.6
AL8G41420 Arabidopsis lyrata HOM05D006002 ORTHO05D007651 4.4e-185 651.4 378 86.8
CARHR278060 Cardamine hirsuta HOM05D006002 ORTHO05D007651 1.0e-181 640.2 376 84.0
Thhalv10004403m.g Eutrema salsugineum HOM05D006002 ORTHO05D007651 3.8e-181 638.3 382 85.3
Sp2g27210 Schrenkiella parvula HOM05D006002 ORTHO05D007651 7.5e-177 624.0 382 82.5
Aa31LG1G17780 Aethionema arabicum HOM05D006002 ORTHO05D007651 3.8e-165 585.1 382 76.7
A06p30870 Brassica napus HOM05D006002 ORTHO05D007651 3.3e-164 582.0 377 79.8
BcaB02g09782 Brassica carinata HOM05D006002 ORTHO05D007651 2.1e-163 579.3 373 78.8
BolC3t18471H Brassica oleracea HOM05D006002 ORTHO05D007651 1.4e-162 576.6 377 79.0
BraA06t26026Z Brassica rapa HOM05D006002 ORTHO05D007651 5.7e-161 571.2 369 79.9
BcaC01g02672 Brassica carinata HOM05D006002 ORTHO05D007651 1.3e-160 570.1 374 78.6
C03p62100 Brassica napus HOM05D006002 ORTHO05D007651 1.0e-157 560.5 369 78.6
THA.LOC104819332 Tarenaya hassleriana HOM05D006002 ORTHO05D007651 1.2e-145 520.4 385 69.9
Prupe.4G144100 Prunus persica HOM05D006002 ORTHO05D007651 1.8e-122 443.4 369 61.8
RcHm_v2.0_Chr5g0027061 Rosa chinensis HOM05D006002 ORTHO05D007651 1.4e-119 433.7 370 58.9
Potri.003G221400 Populus trichocarpa HOM05D006002 ORTHO05D007651 2.4e-119 433.0 351 62.4
FAN16G0275 Fragaria x ananassa HOM05D006002 ORTHO05D007651 4.2e-119 432.2 372 59.4
MD10G1197800 Malus domestica HOM05D006002 ORTHO05D007651 7.1e-119 431.4 369 61.0
FvH4_3g16091 Fragaria vesca HOM05D006002 ORTHO05D007651 9.3e-119 431.0 370 58.9
Manes.03G102600 Manihot esculenta HOM05D006002 ORTHO05D007651 9.3e-119 431.0 356 62.4
QL04p088541 Quercus lobata HOM05D006002 ORTHO05D007651 9.3e-119 431.0 341 61.9
FAN11G0453 Fragaria x ananassa HOM05D006002 ORTHO05D007651 3.5e-118 429.1 367 59.4
Actinidia37107 Actinidia chinensis HOM05D006002 ORTHO05D007651 4.6e-118 428.7 378 59.5
Eucgr.F01438 Eucalyptus grandis HOM05D006002 ORTHO05D007651 4.6e-118 428.7 340 61.2
FAN25G3512 Fragaria x ananassa HOM05D006002 ORTHO05D007651 1.0e-117 427.6 326 63.2
Psat3g026200 Pisum sativum HOM05D006002 ORTHO05D007651 2.3e-117 426.4 371 58.2
Rhsim04G0006400 Rhododendron simsii HOM05D006002 ORTHO05D007651 6.7e-117 424.9 365 58.9
Glyma.15G260100 Glycine max HOM05D006002 ORTHO05D007651 4.3e-116 422.2 372 57.5
Medtr7g107330 Medicago truncatula HOM05D006002 ORTHO05D007651 2.8e-115 419.5 371 56.6
Ca_09098_v3 Cicer arietinum L. HOM05D006002 ORTHO05D007651 6.2e-115 418.3 374 57.2
Glyma.08G167200 Glycine max HOM05D006002 ORTHO05D007651 1.8e-114 416.8 373 57.6
vmacro09790 Vaccinium macrocarpon HOM05D006002 ORTHO05D007651 1.8e-114 416.8 365 58.4
Hma1.2p1_0193F.1_g084460 Hydrangea macrophylla HOM05D006002 ORTHO05D007651 4.0e-114 415.6 341 59.8
TAR627G1081 Trochodendron aralioides HOM05D006002 ORTHO05D007651 9.0e-114 414.5 380 57.4
Hma1.2p1_0193F.1_g084470 Hydrangea macrophylla HOM05D006002 ORTHO05D007651 2.0e-113 413.3 334 60.5
CAN.G943.23 Capsicum annuum HOM05D006002 ORTHO05D007651 7.6e-113 411.4 328 62.2
CsaV3_2G022200 Cucumis sativus L. HOM05D006002 ORTHO05D007651 3.8e-112 409.1 333 58.6
COL.COLO4_25103 Corchorus olitorius HOM05D006002 ORTHO05D007651 1.1e-111 407.5 352 59.9
CSS0008604 Camellia sinensis var. sinensis HOM05D006002 ORTHO05D007651 1.9e-111 406.8 340 60.9
PGR083G2675 Punica granatum HOM05D006002 ORTHO05D007651 2.4e-111 406.4 335 60.6
Sopen07g034460 Solanum pennellii HOM05D006002 ORTHO05D007651 2.4e-111 406.4 329 60.2
Ciclev10020646m.g Citrus clementina HOM05D006002 ORTHO05D007651 3.2e-111 406.0 327 61.8
Lsat_1_v5_gn_7_116060 Lactuca sativa HOM05D006002 ORTHO05D007651 5.5e-111 405.2 351 58.4
TWI53G1943 Tripterygium wilfordii HOM05D006002 ORTHO05D007651 5.5e-111 405.2 324 60.5
Sabra03G0164800 Salix brachista HOM05D006002 ORTHO05D007651 9.3e-111 404.4 337 60.2
Nitab4.5_0001235g0050 Nicotiana tabacum HOM05D006002 ORTHO05D007651 1.2e-110 404.1 331 60.1
arahy.Tifrunner.gnm1.ann1.0RH0I3 Arachis hypogaea HOM05D006002 ORTHO05D007651 6.0e-110 401.7 322 61.5
PGSC0003DMG400022243 Solanum tuberosum HOM05D006002 ORTHO05D007651 6.0e-110 401.7 329 60.2
Phvul.005G050900 Phaseolus vulgaris HOM05D006002 ORTHO05D007651 7.9e-110 401.4 359 57.4
Lj3g0018048 Lotus japonicus HOM05D006002 ORTHO05D007651 2.3e-109 399.8 335 58.2
Solyc07g066280.3 Solanum lycopersicum HOM05D006002 ORTHO05D007651 3.0e-109 399.4 329 58.7
VMungo1080G0998 Vigna mungo HOM05D001395 ORTHO05D002039 3.0e-109 399.4 354 56.2
arahy.Tifrunner.gnm1.ann1.HWL53Q Arachis hypogaea HOM05D006002 ORTHO05D007651 5.1e-109 398.7 322 60.9
Nn3g20175 Nelumbo nucifera HOM05D006002 ORTHO05D007651 5.1e-109 398.7 332 60.2
Cc05_g15870 Coffea canephora HOM05D006002 ORTHO05D007651 8.7e-109 397.9 350 58.3
Nitab4.5_0000294g0110 Nicotiana tabacum HOM05D006002 ORTHO05D007651 8.7e-109 397.9 345 58.3
ClCG11G016270 Citrullus lanatus HOM05D006002 ORTHO05D007651 1.1e-108 397.5 333 57.7
Sed0002243 Sechium edule HOM05D006002 ORTHO05D007651 1.5e-108 397.1 341 57.5
Migut.M01570 Erythranthe guttata HOM05D006002 ORTHO05D007651 1.9e-108 396.7 327 59.9
Haze_07820 Corylus avellana HOM05D006002 ORTHO05D007651 2.5e-108 396.4 309 62.1
Gohir.A05G076100 Gossypium hirsutum HOM05D006002 ORTHO05D007651 4.3e-108 395.6 342 59.9
Peaxi162Scf00232g00102 Petunia axillaris HOM05D006002 ORTHO05D007651 7.4e-108 394.8 343 57.1
Gorai.009G080200 Gossypium raimondii HOM05D006002 ORTHO05D007651 1.3e-107 394.0 342 59.6
PSO675G3741 Papaver somniferum HOM05D006002 ORTHO05D007651 1.3e-107 394.0 322 59.3
HanXRQChr11g0335201 Helianthus annuus HOM05D006002 ORTHO05D007651 4.8e-107 392.1 329 61.1
MBI02_g43301_MAGBIO Magnolia biondii HOM05D006002 ORTHO05D007651 6.2e-107 391.7 348 56.6
PSO541G1619 Papaver somniferum HOM05D006002 ORTHO05D007651 6.2e-107 391.7 375 54.7
Eucgr.F01442 Eucalyptus grandis HOM05D006002 ORTHO05D007651 1.1e-106 391.0 313 59.7
CDE02G2905 Ceratophyllum demersum HOM05D006002 ORTHO05D007651 2.4e-106 389.8 330 58.8
CANSAT56G1259 Cannabis sativa HOM05D006002 ORTHO05D007651 3.1e-106 389.4 341 57.5
ECA236G2913 Erigeron canadensis HOM05D006002 ORTHO05D007651 3.1e-106 389.4 333 58.6
Aqoxy1G01586 Aquilegia oxysepala HOM05D006002 ORTHO05D007651 5.3e-106 388.7 350 57.4
Ah.04g163380 Amaranthus hybridus HOM05D006002 ORTHO05D007651 6.9e-106 388.3 349 57.0
SGA_v2.0_scaffold7G03564 Striga asiatica HOM05D006002 ORTHO05D007651 9.0e-106 387.9 328 58.5
Sc03g0007860 Simmondsia chinensis HOM05D006002 ORTHO05D007651 2.0e-105 386.7 369 55.0
Lj8A185G55 Lonicera japonica HOM05D006002 ORTHO05D007651 7.6e-105 384.8 326 60.7
MSTRG.16122 Avicennia marina HOM05D006002 ORTHO05D007651 2.9e-104 382.9 334 56.3
QL04p088993 Quercus lobata HOM05D006002 ORTHO05D007651 3.8e-104 382.5 286 63.3
Hund02296 Selenicereus undatus HOM05D006002 ORTHO05D007651 6.5e-104 381.7 327 57.8
SalBow8G1862 Salvia bowleyana HOM05D006002 ORTHO05D007651 1.1e-103 380.9 326 59.5
EL10Ac4g08518 Beta vulgaris HOM05D006002 ORTHO05D007651 1.6e-102 377.1 370 53.5
CiPaw.11G062100 Carya illinoinensis HOM05D006002 ORTHO05D007651 4.6e-102 375.6 288 61.1
Duzib168G0541 Durio zibethinus HOM05D006002 ORTHO05D007651 3.9e-101 372.5 342 57.9
MELO3C010553.2 Cucumis melo HOM05D006002 ORTHO05D007651 2.5e-100 369.8 295 59.0
Thecc.03G324000 Theobroma cacao HOM05D006002 ORTHO05D007651 5.7e-100 368.6 344 55.8
Lalb_Chr25g0284701 Lupinus albus HOM05D006002 ORTHO05D007651 4.8e-99 365.5 291 61.5
GSVIVG01020461001 Vitis vinifera HOM05D006002 ORTHO05D007651 4.8e-99 365.5 247 70.0
Gohir.D05G078800 Gossypium hirsutum HOM05D006002 ORTHO05D007651 8.2e-99 364.8 311 60.1
unitig_748.g7639 Utricularia gibba HOM05D006002 ORTHO05D007651 2.4e-98 363.2 335 54.6
Gohir.1Z049302 Gossypium hirsutum HOM05D006002 ORTHO05D007651 3.2e-95 352.8 340 55.6
HPP92_001894 Vanilla planifolia HOM05D006002 ORTHO05D004222 2.7e-94 349.7 329 56.8
MBI02_g20986_MAGBIO Magnolia biondii HOM05D006002 ORTHO05D007651 8.7e-93 344.7 348 53.7
QL03p043202 Quercus lobata HOM05D006002 ORTHO05D007651 1.1e-87 327.8 261 61.7
Os12g0612500 Oryza sativa ssp. japonica HOM05D006002 ORTHO05D007651 1.4e-87 327.4 371 48.8
ATR0165G036 Amborella trichopoda HOM05D006002 ORTHO05D007651 4.2e-87 325.9 244 64.3
SEGI_37419 Sequoiadendron giganteum HOM05D006002 ORTHO05D007651 2.9e-80 303.1 286 50.7
Dinv42524 Davidia involucrata HOM05D006002 ORTHO05D007651 1.9e-79 300.4 349 48.1
SMO145G0236 Selaginella moellendorffii HOM05D006002 ORTHO05D007651 1.7e-75 287.3 328 47.0
MD05G1214000 Malus domestica HOM05D006002 ORTHO05D007651 1.0e-72 278.1 241 59.3
Pp3c1_22930 Physcomitrium patens HOM05D006002 ORTHO05D007651 2.2e-72 276.9 255 53.3
Mapoly0051s0043 Marchantia polymorpha HOM05D006002 ORTHO05D007651 2.5e-71 273.5 250 53.2
Atru.chr2.1886 Acer truncatum HOM05D006002 ORTHO05D007651 7.2e-71 271.9 224 57.6
Potri.018G000850 Populus trichocarpa HOM05D006002 ORTHO05D007651 7.2e-71 271.9 322 46.9
AagrBONN_evm.TU.Sc2ySwM_344.4971 Anthoceros agrestis HOM05D006002 ORTHO05D007651 2.2e-67 260.4 329 43.8
AUR62041934 Chenopodium quinoa HOM05D006002 ORTHO05D007651 1.8e-66 257.3 293 49.8
AUR62035491 Chenopodium quinoa HOM05D006002 ORTHO05D007651 5.0e-64 249.2 304 47.4
Cfa022974 Carpinus fangiana HOM05D006002 ORTHO05D007651 4.7e-62 242.7 204 58.3
Cpa.g.sc42.79 Carica papaya HOM05D006002 ORTHO05D007651 3.7e-59 233.0 240 55.4
CBR_g8978 Chara braunii HOM05D006002 ORTHO05D007651 4.1e-58 229.6 217 52.5
Oeu052016.1 Olea europaea HOM05D006002 ORTHO05D007651 4.2e-55 219.5 200 54.5
Actinidia35439 Actinidia chinensis HOM05D006002 ORTHO05D007651 1.0e-53 214.9 234 51.7
TPR.G32276 Trifolium pratense HOM05D006002 ORTHO05D007651 1.4e-53 214.5 371 36.7
Potri.001G003632 Populus trichocarpa HOM05D006002 ORTHO05D007651 7.0e-50 202.2 154 63.6
MCO01G477 Micromonas commoda HOM05D006002 ORTHO05D007651 2.7e-49 200.3 380 34.7
TPR.G18376 Trifolium pratense HOM05D006002 ORTHO05D007651 2.9e-48 196.8 155 60.6
Cpa.g.sc42.82 Carica papaya HOM05D006002 ORTHO05D007651 6.8e-45 185.7 124 70.2
QL04p062372 Quercus lobata HOM05D006002 ORTHO05D007651 1.7e-43 181.0 123 66.7
Zm00001eb031660 Zea mays HOM05D006002 ORTHO05D007651 5.9e-41 172.6 123 65.0
PRCOL_00003514 Prasinoderma coloniale HOM05D006002 ORTHO05D007651 1.0e-40 171.8 411 33.3
Cre07.g337516 Chlamydomonas reinhardtii HOM05D006002 ORTHO05D007651 3.6e-38 163.3 337 33.2
MD05G1214300 Malus domestica HOM05D006002 ORTHO05D007651 1.4e-37 161.4 108 75.0
QL04p088694 Quercus lobata HOM05D006002 ORTHO05D007651 1.1e-34 151.8 173 49.7
SEGI_15629 Sequoiadendron giganteum HOM05D006002 ORTHO05D007651 7.0e-34 149.1 123 55.3
BcaB04g17517 Brassica carinata HOM05D006002 ORTHO05D007651 1.6e-30 137.9 88 75.0
COL.COLO4_30126 Corchorus olitorius HOM05D006002 ORTHO05D007651 1.7e-27 127.9 85 65.9
QL04p089617 Quercus lobata HOM05D002182 ORTHO05D004671 3.9e-24 116.7 172 44.2
QL03p043192 Quercus lobata HOM05D006002 ORTHO05D007651 1.1e-18 98.6 63 69.8
QL04p089868 Quercus lobata HOM05D006002 ORTHO05D007651 1.1e-18 98.6 71 62.0
CAN.G42.13 Capsicum annuum HOM05D006002 ORTHO05D007651 6.0e-09 66.2 56 57.1
Cfa023409 Carpinus fangiana HOM05D006002 ORTHO05D126491 3.0e-08 63.9 180 30.6
Cre01.g036750 Chlamydomonas reinhardtii HOM05D006345 ORTHO05D007428 5.1e-08 63.2 191 28.3
FvH4_3g13390 Fragaria vesca HOM05D006345 ORTHO05D007428 1.9e-07 61.2 147 29.9
FAN11G3812 Fragaria x ananassa HOM05D006345 ORTHO05D007428 1.9e-07 61.2 147 29.9
FAN21G0075 Fragaria x ananassa HOM05D006345 ORTHO05D007428 1.9e-07 61.2 147 29.9
FAN16G3736 Fragaria x ananassa HOM05D006345 ORTHO05D007428 3.3e-07 60.5 147 29.9
MD05G1242200 Malus domestica HOM05D006345 ORTHO05D007428 1.6e-06 58.2 147 28.6
FAN25G2350 Fragaria x ananassa HOM05D006345 ORTHO05D007428 2.1e-06 57.8 147 29.3
RcHm_v2.0_Chr5g0022101 Rosa chinensis HOM05D006345 ORTHO05D007428 2.1e-06 57.8 139 30.2
PSO675G4619 Papaver somniferum HOM05D000047 ORTHO05D000044 2.8e-06 57.4 107 36.4
Prupe.4G121300 Prunus persica HOM05D006345 ORTHO05D007428 8.1e-06 55.8 139 29.5


User provided reference genes

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