Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s2482 Capsella rubella HOM05D005188 ORTHO05D006153 1.1e-90 336.7 172 100.0
AT5G64040 Arabidopsis thaliana HOM05D005188 ORTHO05D006153 1.3e-88 329.7 172 97.1
AL8G41300 Arabidopsis lyrata HOM05D005188 ORTHO05D006153 2.5e-87 325.5 172 95.3
CARHR277950 Cardamine hirsuta HOM05D005188 ORTHO05D006153 1.2e-84 316.6 172 94.8
BcaC01g02658 Brassica carinata HOM05D005188 ORTHO05D006153 3.7e-83 311.6 172 93.0
BcaC01g02659 Brassica carinata HOM05D005188 ORTHO05D006153 3.7e-83 311.6 172 93.0
Sp2g27110 Schrenkiella parvula HOM05D005188 ORTHO05D006153 1.9e-82 309.3 172 91.9
BcaB02g09793 Brassica carinata HOM05D005188 ORTHO05D006153 2.4e-82 308.9 172 91.9
Thhalv10005005m.g Eutrema salsugineum HOM05D005188 ORTHO05D006153 1.6e-81 306.2 172 91.3
A06p30750 Brassica napus HOM05D005188 ORTHO05D006153 6.0e-81 304.3 172 90.7
BcaB07g29717 Brassica carinata HOM05D005188 ORTHO05D006153 1.2e-78 296.6 172 90.7
Aa31LG1G17870 Aethionema arabicum HOM05D005188 ORTHO05D006153 6.2e-78 294.3 175 88.0
C09p09640 Brassica napus HOM05D005188 ORTHO05D006153 8.1e-78 293.9 173 90.2
C02p63110 Brassica napus HOM05D005188 ORTHO05D006153 6.8e-77 290.8 172 89.0
BolC2t12383H Brassica oleracea HOM05D005188 ORTHO05D006153 6.8e-77 290.8 172 89.0
BcaC03g18240 Brassica carinata HOM05D005188 ORTHO05D006153 1.2e-76 290.0 172 89.0
BolC9t53875H Brassica oleracea HOM05D005188 ORTHO05D006153 5.8e-76 287.7 184 85.3
BolC3t18491H Brassica oleracea HOM05D005188 ORTHO05D006153 3.7e-75 285.0 176 86.4
A09p08510 Brassica napus HOM05D005188 ORTHO05D006153 8.9e-69 263.8 173 84.4
BraA09t36500Z Brassica rapa HOM05D005188 ORTHO05D006153 8.9e-69 263.8 173 84.4
COL.COLO4_35748 Corchorus olitorius HOM05D005188 ORTHO05D006153 6.6e-64 247.7 173 74.6
C03p62290 Brassica napus HOM05D005188 ORTHO05D006153 1.1e-63 246.9 142 93.0
Potri.007G105900 Populus trichocarpa HOM05D005188 ORTHO05D006153 3.3e-63 245.4 177 72.9
Potri.005G063300 Populus trichocarpa HOM05D005188 ORTHO05D006153 7.3e-63 244.2 177 71.8
Thecc.01G132900 Theobroma cacao HOM05D005188 ORTHO05D006153 3.6e-62 241.9 174 73.0
CANSAT01G0911 Cannabis sativa HOM05D005188 ORTHO05D006153 4.7e-62 241.5 174 72.4
Sabra05G0052500 Salix brachista HOM05D005188 ORTHO05D006153 6.2e-62 241.1 177 71.2
TWI75G0084 Tripterygium wilfordii HOM05D005188 ORTHO05D006153 1.1e-61 240.4 172 73.3
BraA06t26017Z Brassica rapa HOM05D005188 ORTHO05D006153 1.8e-61 239.6 142 90.1
Ciclev10002687m.g Citrus clementina HOM05D005188 ORTHO05D006153 4.0e-61 238.4 175 72.6
Lj1g0024625 Lotus japonicus HOM05D005188 ORTHO05D006153 5.2e-61 238.0 172 70.9
Cpa.g.sc3.345 Carica papaya HOM05D005188 ORTHO05D006153 1.2e-60 236.9 178 72.5
Gohir.D11G230800 Gossypium hirsutum HOM05D005188 ORTHO05D006153 1.5e-60 236.5 178 71.9
THA.LOC104800083 Tarenaya hassleriana HOM05D005188 ORTHO05D006153 1.5e-60 236.5 177 74.0
Gohir.A11G226800 Gossypium hirsutum HOM05D005188 ORTHO05D006153 2.0e-60 236.1 178 71.3
Glyma.04G215800 Glycine max HOM05D005188 ORTHO05D006153 1.7e-59 233.0 172 68.6
TPR.G18740 Trifolium pratense HOM05D005188 ORTHO05D006153 2.9e-59 232.3 179 72.6
Manes.12G156000 Manihot esculenta HOM05D005188 ORTHO05D006153 3.8e-59 231.9 174 68.4
TWI79G1553 Tripterygium wilfordii HOM05D005188 ORTHO05D006153 8.4e-59 230.7 172 70.3
Glyma.06G150300 Glycine max HOM05D005188 ORTHO05D006153 1.1e-58 230.3 172 69.8
Sabra07G0086700 Salix brachista HOM05D005188 ORTHO05D006153 1.1e-58 230.3 176 70.5
VMungo0251G2948 Vigna mungo HOM05D005188 ORTHO05D006153 1.1e-58 230.3 174 67.2
CiPaw.04G081900 Carya illinoinensis HOM05D005188 ORTHO05D006153 1.4e-58 229.9 181 69.6
Lalb_Chr13g0296451 Lupinus albus HOM05D005188 ORTHO05D006153 1.4e-58 229.9 177 69.5
PGR008G0006 Punica granatum HOM05D005188 ORTHO05D006153 1.4e-58 229.9 172 66.3
PGR119G0239 Punica granatum HOM05D005188 ORTHO05D006153 1.4e-58 229.9 172 66.3
Cc10_g12590 Coffea canephora HOM05D005188 ORTHO05D006153 1.9e-58 229.6 174 67.8
Gorai.003G066700 Gossypium raimondii HOM05D005188 ORTHO05D006153 1.9e-58 229.6 185 69.2
QL02p001672 Quercus lobata HOM05D005188 ORTHO05D006153 1.9e-58 229.6 174 67.8
CAN.G792.16 Capsicum annuum HOM05D005188 ORTHO05D006153 2.4e-58 229.2 172 68.6
Gohir.A05G384500 Gossypium hirsutum HOM05D005188 ORTHO05D006153 3.2e-58 228.8 176 70.5
MBI06_g39404_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 3.2e-58 228.8 175 68.0
Ca_16917_v3 Cicer arietinum L. HOM05D005188 ORTHO05D006153 4.2e-58 228.4 175 68.0
Dinv24366 Davidia involucrata HOM05D005188 ORTHO05D006153 4.2e-58 228.4 175 67.4
Gorai.012G035200 Gossypium raimondii HOM05D005188 ORTHO05D006153 9.3e-58 227.3 176 70.5
Haze_25240 Corylus avellana HOM05D005188 ORTHO05D006153 1.6e-57 226.5 177 67.8
Lj2A607T35 Lonicera japonica HOM05D005188 ORTHO05D006153 1.6e-57 226.5 173 68.8
Medtr3g095540 Medicago truncatula HOM05D005188 ORTHO05D006153 2.1e-57 226.1 177 70.1
Prupe.4G271200 Prunus persica HOM05D005188 ORTHO05D006153 2.7e-57 225.7 177 68.9
Cfa002897 Carpinus fangiana HOM05D005188 ORTHO05D006153 4.6e-57 224.9 177 66.7
CDE08G0648 Ceratophyllum demersum HOM05D005188 ORTHO05D006153 6.0e-57 224.6 175 65.7
Psat5g063680 Pisum sativum HOM05D005188 ORTHO05D006153 7.8e-57 224.2 177 70.1
TAR381G0300 Trochodendron aralioides HOM05D005188 ORTHO05D006153 1.0e-56 223.8 179 67.6
CiPaw.03G121400 Carya illinoinensis HOM05D005188 ORTHO05D006153 1.7e-56 223.0 177 67.2
ClCG01G015380 Citrullus lanatus HOM05D005188 ORTHO05D006153 2.3e-56 222.6 174 66.7
Sopen08g004510 Solanum pennellii HOM05D005188 ORTHO05D006153 3.0e-56 222.2 172 69.8
MELO3C008060.2 Cucumis melo HOM05D005188 ORTHO05D006153 5.1e-56 221.5 174 66.1
Aqoxy5G02315 Aquilegia oxysepala HOM05D005188 ORTHO05D006153 6.6e-56 221.1 175 67.4
Phvul.002G269400 Phaseolus vulgaris HOM05D005188 ORTHO05D006153 8.7e-56 220.7 174 66.1
CDE02G4401 Ceratophyllum demersum HOM05D005188 ORTHO05D006153 1.1e-55 220.3 175 65.1
Nn2g12180 Nelumbo nucifera HOM05D005188 ORTHO05D006153 1.1e-55 220.3 174 66.1
Solyc08g013670.3 Solanum lycopersicum HOM05D005188 ORTHO05D006153 1.5e-55 219.9 172 69.2
CsaV3_6G041600 Cucumis sativus L. HOM05D005188 ORTHO05D006153 2.5e-55 219.2 174 64.9
SalBow1G2748 Salvia bowleyana HOM05D005188 ORTHO05D006153 2.5e-55 219.2 172 66.3
Hma1.2p1_0476F.1_g160790 Hydrangea macrophylla HOM05D005188 ORTHO05D006153 4.3e-55 218.4 176 66.5
Hund23270 Selenicereus undatus HOM05D005188 ORTHO05D006153 5.6e-55 218.0 180 63.3
MD15G1441800 Malus domestica HOM05D005188 ORTHO05D006153 7.3e-55 217.6 172 64.0
Lj4g0001203 Lotus japonicus HOM05D005188 ORTHO05D006153 9.6e-55 217.2 172 66.9
SGA_v2.0_scaffold370G50114 Striga asiatica HOM05D005188 ORTHO05D006153 1.3e-54 216.9 172 66.9
PGSC0003DMG400005805 Solanum tuberosum HOM05D005188 ORTHO05D006153 2.1e-54 216.1 177 66.7
Ah.02g121530 Amaranthus hybridus HOM05D005188 ORTHO05D006153 3.6e-54 215.3 172 64.5
MD01G1004300 Malus domestica HOM05D005188 ORTHO05D006153 4.8e-54 214.9 173 64.2
Oeu037826.1 Olea europaea HOM05D005188 ORTHO05D006153 4.8e-54 214.9 172 66.3
arahy.Tifrunner.gnm1.ann1.V5WWJ8 Arachis hypogaea HOM05D005188 ORTHO05D006153 8.1e-54 214.2 176 67.0
DCAR_001211 Daucus carota HOM05D005188 ORTHO05D006153 8.1e-54 214.2 174 66.7
Migut.H00702 Erythranthe guttata HOM05D005188 ORTHO05D006153 1.1e-53 213.8 178 68.0
FvH4_1g24360 Fragaria vesca HOM05D005188 ORTHO05D006153 1.4e-53 213.4 172 67.4
FAN19G1208 Fragaria x ananassa HOM05D005188 ORTHO05D006153 1.4e-53 213.4 172 67.4
arahy.Tifrunner.gnm1.ann1.DJM1RY Arachis hypogaea HOM05D005188 ORTHO05D006153 1.8e-53 213.0 174 64.9
AUR62017881 Chenopodium quinoa HOM05D005188 ORTHO05D006153 1.8e-53 213.0 172 65.7
Peaxi162Scf01257g00019 Petunia axillaris HOM05D005188 ORTHO05D006153 2.4e-53 212.6 183 62.8
RcHm_v2.0_Chr2g0120891 Rosa chinensis HOM05D005188 ORTHO05D006153 5.3e-53 211.5 172 66.3
FAN28G1395 Fragaria x ananassa HOM05D002517 ORTHO05D003040 2.0e-52 209.5 170 66.5
CSS0010064 Camellia sinensis var. sinensis HOM05D005188 ORTHO05D006153 4.5e-52 208.4 178 62.4
CSS0045275 Camellia sinensis var. sinensis HOM05D005188 ORTHO05D006153 4.5e-52 208.4 178 62.4
MSTRG.2649 Avicennia marina HOM05D005188 ORTHO05D006153 7.6e-52 207.6 172 64.5
MBI06_g27435_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 1.3e-51 206.8 131 76.3
Nitab4.5_0000673g0170 Nicotiana tabacum HOM05D005188 ORTHO05D006153 2.2e-51 206.1 175 64.0
Sed0019160 Sechium edule HOM05D005188 ORTHO05D006153 3.8e-51 205.3 179 62.0
ATR0987G005 Amborella trichopoda HOM05D005188 ORTHO05D006153 6.4e-51 204.5 178 62.9
Atru.chr4.905 Acer truncatum HOM05D005188 ORTHO05D006153 1.1e-50 203.8 173 63.6
Actinidia06616 Actinidia chinensis HOM05D005188 ORTHO05D006153 1.1e-50 203.8 177 62.7
FAN26G2437 Fragaria x ananassa HOM05D002517 ORTHO05D006153 1.1e-50 203.8 172 66.3
MBI03_g42548_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 1.1e-50 203.8 175 60.6
Sed0010246 Sechium edule HOM05D005188 ORTHO05D006153 1.1e-50 203.8 173 62.4
ECA247G1960 Erigeron canadensis HOM05D005188 ORTHO05D006153 3.2e-50 202.2 170 62.4
HanXRQChr04g0107551 Helianthus annuus HOM05D005188 ORTHO05D006153 3.2e-50 202.2 175 62.9
GSVIVG01026478001 Vitis vinifera HOM05D005188 ORTHO05D006153 4.2e-50 201.8 172 61.0
unitig_899.g14682 Utricularia gibba HOM05D005188 ORTHO05D006153 5.4e-50 201.4 174 64.4
Rhsim10G0133700 Rhododendron simsii HOM05D005188 ORTHO05D006153 2.7e-49 199.1 180 63.3
Lsat_1_v5_gn_1_10061 Lactuca sativa HOM05D005188 ORTHO05D006153 3.5e-49 198.7 177 61.0
PSO541G2775 Papaver somniferum HOM05D005188 ORTHO05D006153 6.0e-49 198.0 172 61.0
HPP92_019391 Vanilla planifolia HOM05D005188 ORTHO05D006153 7.9e-49 197.6 176 62.5
PSO675G9377 Papaver somniferum HOM05D005188 ORTHO05D006153 1.8e-48 196.4 172 59.3
EL10Ac6g15302 Beta vulgaris HOM05D005188 ORTHO05D006153 1.3e-46 190.3 127 73.2
vmacro12795 Vaccinium macrocarpon HOM05D005188 ORTHO05D006153 4.8e-46 188.3 183 61.7
Oeu050119.1 Olea europaea HOM05D005188 ORTHO05D006153 6.9e-45 184.5 172 57.0
Zm00001eb138650 Zea mays HOM05D005188 ORTHO05D006153 4.5e-44 181.8 145 64.8
Zm00001eb409220 Zea mays HOM05D005188 ORTHO05D006153 1.7e-43 179.9 111 74.8
Os12g0189400 Oryza sativa ssp. japonica HOM05D005188 ORTHO05D006153 1.1e-42 177.2 110 77.3
Duzib264G0557 Durio zibethinus HOM05D005188 ORTHO05D006153 3.2e-42 175.6 145 67.6
Eucgr.I00200 Eucalyptus grandis HOM05D005188 ORTHO05D006153 6.7e-40 167.9 148 62.8
Duzib147G0711 Durio zibethinus HOM05D005188 ORTHO05D006153 2.1e-38 162.9 145 65.5
SEGI_16120 Sequoiadendron giganteum HOM05D005188 ORTHO05D006153 4.0e-37 158.7 131 56.5
BraA02t09233Z Brassica rapa HOM05D005188 ORTHO05D006153 2.6e-36 156.0 115 81.7
Sc16g0003820 Simmondsia chinensis HOM05D005188 ORTHO05D006153 3.8e-35 152.1 143 60.1
BcaB04g17222 Brassica carinata HOM05D005188 ORTHO05D006153 1.4e-34 150.2 133 61.7
A02p43130 Brassica napus HOM05D005188 ORTHO05D006153 1.3e-32 143.7 100 84.0
BcaB08g36594 Brassica carinata HOM05D005188 ORTHO05D006153 7.4e-31 137.9 74 89.2
SMO144G0055 Selaginella moellendorffii HOM05D005188 ORTHO05D006153 9.7e-31 137.5 82 72.0
BolC2t07163H Brassica oleracea HOM05D005188 ORTHO05D006153 2.2e-30 136.3 74 87.8
BolC7t41311H Brassica oleracea HOM05D005188 ORTHO05D006153 2.2e-30 136.3 72 90.3
BcaC04g18786 Brassica carinata HOM05D005188 ORTHO05D006153 8.2e-30 134.4 74 86.5
Duzib187G0538 Durio zibethinus HOM05D005188 ORTHO05D006153 1.0e-27 127.5 131 62.6
Mapoly0116s0042 Marchantia polymorpha HOM05D005188 ORTHO05D006153 1.0e-24 117.5 137 48.9
AUR62003566 Chenopodium quinoa HOM05D005188 ORTHO05D006153 9.7e-23 110.9 172 44.2
BcaC03g13890 Brassica carinata HOM05D005188 ORTHO05D006153 1.4e-21 107.1 74 71.6
Cre02.g082500 Chlamydomonas reinhardtii HOM05D005188 ORTHO05D006153 5.3e-21 105.1 127 46.5
AagrBONN_evm.TU.Sc2ySwM_362.2803 Anthoceros agrestis HOM05D005188 ORTHO05D006153 9.4e-18 94.4 85 56.5
MCO09G058 Micromonas commoda HOM05D005188 ORTHO05D006153 3.3e-15 85.9 138 39.9
CBR_g45633 Chara braunii HOM05D005188 ORTHO05D006153 7.4e-15 84.7 89 51.7
PRCOL_00004565 Prasinoderma coloniale HOM05D005188 ORTHO05D006153 7.4e-15 84.7 79 53.2
Nn5g28540 Nelumbo nucifera HOM05D005188 ORTHO05D006153 6.3e-14 81.6 103 51.5
Nitab4.5_0005544g0070 Nicotiana tabacum HOM05D005188 ORTHO05D006153 4.1e-13 79.0 111 46.8
BcaB04g20368 Brassica carinata HOM05D005188 ORTHO05D006153 2.0e-12 76.6 69 69.6
Gohir.D04G031000 Gossypium hirsutum HOM05D006465 ORTHO05D008207 1.4e-10 70.5 111 48.6
C02p10930 Brassica napus HOM05D005188 ORTHO05D006153 8.0e-09 64.7 30 90.0
BcaB07g32714 Brassica carinata HOM05D004025 ORTHO05D019855 9.7e-07 57.8 40 80.0


User provided reference genes

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