Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s2479 Capsella rubella HOM05D007225 ORTHO05D009062 4.5e-127 458.0 239 100.0
AL8G41270 Arabidopsis lyrata HOM05D007225 ORTHO05D009062 1.0e-110 403.7 239 87.9
AT5G64010 Arabidopsis thaliana HOM05D007225 ORTHO05D009062 1.4e-109 399.8 239 88.3
Thhalv10004850m.g Eutrema salsugineum HOM05D007225 ORTHO05D009062 4.4e-106 388.3 239 87.0
Sp2g27080 Schrenkiella parvula HOM05D007225 ORTHO05D009062 1.3e-105 386.7 239 83.7
CARHR277930 Cardamine hirsuta HOM05D007225 ORTHO05D002208 1.1e-104 383.6 240 86.2
C03p62330 Brassica napus HOM05D007225 ORTHO05D009062 6.5e-102 374.4 239 80.8
BcaC01g02654 Brassica carinata HOM05D007225 ORTHO05D009062 1.5e-101 373.2 239 80.3
BolC3t18495H Brassica oleracea HOM05D007225 ORTHO05D009062 1.5e-101 373.2 239 80.3
A06p30630 Brassica napus HOM05D007225 ORTHO05D009062 1.5e-98 363.2 239 79.5
BraA06t26013Z Brassica rapa HOM05D007225 ORTHO05D009062 3.3e-98 362.1 239 79.5
Aa31LG1G17910 Aethionema arabicum HOM05D007225 ORTHO05D009062 4.7e-84 315.1 254 70.5
THA.LOC104818429 Tarenaya hassleriana HOM05D007225 ORTHO05D009062 1.3e-73 280.4 239 65.7
Cpa.g.sc42.174 Carica papaya HOM05D007225 ORTHO05D009062 3.4e-50 202.6 260 46.5
Ca_17629_v3 Cicer arietinum L. HOM05D007225 ORTHO05D009062 5.1e-46 188.7 242 48.8
CiPaw.04G081200 Carya illinoinensis HOM05D007225 ORTHO05D009062 2.5e-45 186.4 254 46.1
Lalb_Chr13g0296631 Lupinus albus HOM05D007225 ORTHO05D009062 9.6e-45 184.5 241 46.9
Ciclev10002244m.g Citrus clementina HOM05D007225 ORTHO05D009062 1.2e-44 184.1 248 47.6
TPR.G37342 Trifolium pratense HOM05D007225 ORTHO05D009062 2.8e-44 183.0 242 49.2
Atru.chr4.938 Acer truncatum HOM05D007225 ORTHO05D009062 3.6e-44 182.6 250 47.6
Dinv24394 Davidia involucrata HOM05D007225 ORTHO05D009062 1.4e-43 180.6 249 46.6
Prupe.4G273000 Prunus persica HOM05D007225 ORTHO05D009062 1.4e-43 180.6 247 46.6
Psat7g045080 Pisum sativum HOM05D007225 ORTHO05D009062 1.2e-42 177.6 242 45.5
Potri.005G064800 Populus trichocarpa HOM05D007225 ORTHO05D009062 1.2e-42 177.6 253 44.3
TAR625G0602 Trochodendron aralioides HOM05D007225 ORTHO05D009062 2.0e-42 176.8 259 43.2
Potri.005G064951 Populus trichocarpa HOM05D007225 ORTHO05D009062 2.6e-42 176.4 253 43.9
RcHm_v2.0_Chr4g0412751 Rosa chinensis HOM05D007225 ORTHO05D009062 3.4e-42 176.0 240 45.0
QL10p043051 Quercus lobata HOM05D007225 ORTHO05D009062 5.8e-42 175.3 293 41.3
Thecc.01G134800 Theobroma cacao HOM05D007225 ORTHO05D009062 7.6e-42 174.9 245 46.9
Sabra05G0053800 Salix brachista HOM05D007225 ORTHO05D009062 9.9e-42 174.5 253 43.9
CSS0045766 Camellia sinensis var. sinensis HOM05D007225 ORTHO05D009062 2.2e-41 173.3 249 43.4
FAN12G1161 Fragaria x ananassa HOM05D007225 ORTHO05D009062 2.9e-41 172.9 240 43.3
CANSAT01G2273 Cannabis sativa HOM05D007225 ORTHO05D009062 6.4e-41 171.8 244 45.9
Eucgr.I00189 Eucalyptus grandis HOM05D007225 ORTHO05D009062 8.4e-41 171.4 242 43.0
Lj4g0008022 Lotus japonicus HOM05D007225 ORTHO05D009062 1.1e-40 171.0 245 44.9
FvH4_4g13030 Fragaria vesca HOM05D007225 ORTHO05D009062 1.9e-40 170.2 240 43.3
MBI06_g27455_MAGBIO Magnolia biondii HOM05D007225 ORTHO05D009062 1.9e-40 170.2 261 42.1
TAR381G0670 Trochodendron aralioides HOM05D007225 ORTHO05D009062 2.4e-40 169.9 259 44.4
COL.COLO4_35773 Corchorus olitorius HOM05D007225 ORTHO05D009062 5.4e-40 168.7 251 44.2
FAN07G2982 Fragaria x ananassa HOM05D007225 ORTHO05D009062 7.1e-40 168.3 240 42.5
Gohir.D10G108600 Gossypium hirsutum HOM05D007225 ORTHO05D009062 2.1e-39 166.8 249 45.0
vmacro12787 Vaccinium macrocarpon HOM05D007225 ORTHO05D009062 2.1e-39 166.8 249 44.6
MD17G1201700 Malus domestica HOM05D007225 ORTHO05D009062 2.7e-39 166.4 248 43.1
Gorai.011G119000 Gossypium raimondii HOM05D007225 ORTHO05D009062 3.5e-39 166.0 249 44.6
Nitab4.5_0000386g0080 Nicotiana tabacum HOM05D007225 ORTHO05D009062 1.7e-38 163.7 244 42.2
PGSC0003DMG400012541 Solanum tuberosum HOM05D007225 ORTHO05D009062 1.7e-38 163.7 247 42.1
PGR119G1418 Punica granatum HOM05D007225 ORTHO05D009062 8.7e-38 161.4 243 40.7
Hma1.2p1_0539F.1_g174530 Hydrangea macrophylla HOM05D007225 ORTHO05D009062 1.5e-37 160.6 253 43.5
GSVIVG01022343001 Vitis vinifera HOM05D007225 ORTHO05D009062 2.5e-37 159.8 150 55.3
Manes.12G157300 Manihot esculenta HOM05D007225 ORTHO05D009062 3.3e-37 159.5 211 46.4
Cc07_g18810 Coffea canephora HOM05D007225 ORTHO05D009062 1.3e-36 157.5 258 40.7
Aqoxy5G02304 Aquilegia oxysepala HOM05D007225 ORTHO05D009062 3.6e-36 156.0 273 40.3
Carub.0003s2889 Capsella rubella HOM05D007225 ORTHO05D009062 3.6e-36 156.0 89 89.9
Solyc01g105570.4 Solanum lycopersicum HOM05D007225 ORTHO05D009062 4.8e-36 155.6 246 40.7
Medtr8g093850 Medicago truncatula HOM05D007225 ORTHO05D009062 1.1e-35 154.5 147 54.4
Sopen01g048040 Solanum pennellii HOM05D007225 ORTHO05D009062 3.1e-35 152.9 246 41.5
Glyma.05G192800 Glycine max HOM05D007225 ORTHO05D009062 6.9e-35 151.8 246 43.5
Nn5g28498 Nelumbo nucifera HOM05D007225 ORTHO05D009062 9.0e-35 151.4 154 50.0
Hund04436 Selenicereus undatus HOM05D007225 ORTHO05D009062 1.2e-34 151.0 262 38.5
AUR62017902 Chenopodium quinoa HOM05D007225 ORTHO05D009062 2.6e-34 149.8 267 39.3
AUR62043562 Chenopodium quinoa HOM05D007225 ORTHO05D009062 2.6e-34 149.8 267 39.3
Gohir.A10G156900 Gossypium hirsutum HOM05D007225 ORTHO05D009062 4.5e-34 149.1 154 53.2
PSO528G0250 Papaver somniferum HOM05D007225 ORTHO05D009062 2.2e-33 146.7 271 35.8
Sc07g0001760 Simmondsia chinensis HOM05D007225 ORTHO05D009062 3.8e-33 146.0 242 40.5
Phvul.002G273400 Phaseolus vulgaris HOM05D007225 ORTHO05D009062 4.9e-33 145.6 242 42.6
Oeu058297.1 Olea europaea HOM05D007225 ORTHO05D009062 1.9e-32 143.7 246 39.4
PSO170G5625 Papaver somniferum HOM05D007225 ORTHO05D009062 2.4e-32 143.3 270 35.6
AUR62003589 Chenopodium quinoa HOM05D007225 ORTHO05D009062 3.2e-32 142.9 267 37.8
Lsat_1_v5_gn_5_68521 Lactuca sativa HOM05D007225 ORTHO05D009062 9.3e-32 141.4 231 41.6
Aqoxy6G00280 Aquilegia oxysepala HOM05D007225 ORTHO05D009062 7.9e-31 138.3 191 41.9
Peaxi162Scf00172g00611 Petunia axillaris HOM05D007225 ORTHO05D009062 1.0e-30 137.9 152 48.7
Migut.H00686 Erythranthe guttata HOM05D007225 ORTHO05D009062 2.3e-30 136.7 250 42.0
CsaV3_2G019450 Cucumis sativus L. HOM05D007225 ORTHO05D009062 3.9e-30 136.0 240 39.6
ClCG02G000390 Citrullus lanatus HOM05D007225 ORTHO05D009062 6.7e-30 135.2 253 37.2
ATR0709G077 Amborella trichopoda HOM05D007225 ORTHO05D009062 1.9e-29 133.7 152 50.0
Duzib187G1928 Durio zibethinus HOM05D007225 ORTHO05D009062 3.3e-29 132.9 254 38.6
DCAR_010250 Daucus carota HOM05D007225 ORTHO05D009062 9.6e-29 131.3 248 37.5
Rhsim10G0132500 Rhododendron simsii HOM05D007225 ORTHO05D009062 9.6e-29 131.3 194 41.8
MSTRG.23466 Avicennia marina HOM05D007225 ORTHO05D009062 1.3e-28 131.0 252 38.1
EL10Ac1g01390 Beta vulgaris HOM05D007225 ORTHO05D009062 1.3e-28 131.0 307 34.5
ECA233G3017 Erigeron canadensis HOM05D007225 ORTHO05D000131 2.8e-28 129.8 212 39.2
VMungo0251G1761 Vigna mungo HOM05D007225 ORTHO05D009062 4.8e-28 129.0 221 38.5
Sed0013127 Sechium edule HOM05D007225 ORTHO05D009062 5.3e-27 125.6 239 39.3
HPP92_025180 Vanilla planifolia HOM05D007225 ORTHO05D009062 6.9e-27 125.2 276 34.8
AagrBONN_evm.TU.Sc2ySwM_368.986 Anthoceros agrestis HOM05D007225 ORTHO05D009062 5.5e-24 115.5 269 31.6
Pp3c8_18500 Physcomitrium patens HOM05D007225 ORTHO05D009062 1.2e-23 114.4 167 39.5
Nn1g06303 Nelumbo nucifera HOM05D007225 ORTHO05D009062 2.7e-23 113.2 233 35.6
Ah.02g121670 Amaranthus hybridus HOM05D007225 ORTHO05D009062 4.6e-23 112.5 208 35.6
Glyma.08G000900 Glycine max HOM05D007225 ORTHO05D009062 3.0e-22 109.8 235 38.3
Haze_25275 Corylus avellana HOM05D007225 ORTHO05D009062 1.5e-21 107.5 101 54.5
unitig_699.g19729 Utricularia gibba HOM05D007225 ORTHO05D009062 2.5e-21 106.7 251 35.5
Os04g0693250 Oryza sativa ssp. japonica HOM05D007225 ORTHO05D009062 2.1e-20 103.6 260 34.2
arahy.Tifrunner.gnm1.ann1.ST1FFJ Arachis hypogaea HOM05D007225 ORTHO05D009062 6.2e-20 102.1 222 34.2
SMO146G0397 Selaginella moellendorffii HOM05D007225 ORTHO05D009062 6.9e-19 98.6 152 37.5
HanXRQChr12g0380581 Helianthus annuus HOM05D007225 ORTHO05D009062 3.4e-18 96.3 185 36.8
Mapoly0095s0053 Marchantia polymorpha HOM05D007225 ORTHO05D009062 3.4e-18 96.3 273 30.4
SGA_v2.0_scaffold20G09018 Striga asiatica HOM05D007225 ORTHO05D009062 1.1e-16 91.3 164 36.6
DCAR_014328 Daucus carota HOM05D007225 ORTHO05D009062 1.9e-16 90.5 238 30.3
RcHm_v2.0_Chr4g0412711 Rosa chinensis HOM05D007225 ORTHO05D009062 2.5e-16 90.1 84 53.6
AagrBONN_evm.TU.Sc2ySwM_117.1984 Anthoceros agrestis HOM05D007225 ORTHO05D009062 1.3e-14 84.3 155 34.8
SHI11479 Sapria himalayana HOM05D000043 ORTHO05D002577 2.3e-14 83.6 106 38.7
Nitab4.5_0010123g0010 Nicotiana tabacum HOM05D007225 ORTHO05D009062 3.1e-11 73.2 148 38.5
MELO3C023228.2 Cucumis melo HOM05D007225 ORTHO05D009062 6.9e-11 72.0 154 34.4
Nitab4.5_0008206g0020 Nicotiana tabacum HOM05D007225 ORTHO05D009062 9.0e-11 71.6 149 37.6
Os04g0693200 Oryza sativa ssp. japonica HOM05D007225 ORTHO05D009062 8.5e-09 65.1 92 40.2
SEGI_25786 Sequoiadendron giganteum HOM05D021798 ORTHO05D009062 1.9e-08 63.9 157 30.6


User provided reference genes

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