Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s2460 Capsella rubella HOM05D002505 ORTHO05D007115 3.5e-220 768.1 411 100.0
AL8G41060 Arabidopsis lyrata HOM05D002505 ORTHO05D007115 1.2e-193 679.9 410 88.8
AT5G63830 Arabidopsis thaliana HOM05D002505 ORTHO05D007115 5.4e-189 664.5 410 84.4
CARHR277730 Cardamine hirsuta HOM05D002505 ORTHO05D007115 6.9e-184 647.5 413 82.3
Sp2g26890 Schrenkiella parvula HOM05D002505 ORTHO05D007115 1.0e-179 633.6 411 80.8
A06p30440 Brassica napus HOM05D002505 ORTHO05D007115 1.3e-166 590.1 412 76.5
C03p62620 Brassica napus HOM05D002505 ORTHO05D007115 8.4e-166 587.4 412 76.5
BraA06t25993Z Brassica rapa HOM05D002505 ORTHO05D007115 8.4e-166 587.4 412 75.5
BolC3t18519H Brassica oleracea HOM05D002505 ORTHO05D007115 1.9e-165 586.3 412 76.2
BcaC01g02620 Brassica carinata HOM05D002505 ORTHO05D007115 1.8e-163 579.7 387 78.0
Thhalv10004334m.g Eutrema salsugineum HOM05D002505 ORTHO05D007115 7.4e-162 574.3 412 74.5
Aa31LG1G18070 Aethionema arabicum HOM05D002505 ORTHO05D007115 4.2e-149 531.9 423 70.0
THA.LOC104823623 Tarenaya hassleriana HOM05D002505 ORTHO05D007115 1.9e-125 453.4 406 60.8
Gohir.A12G238900 Gossypium hirsutum HOM05D002505 ORTHO05D007115 2.0e-122 443.4 408 58.1
Duzib205G1766 Durio zibethinus HOM05D002505 ORTHO05D007115 1.7e-121 440.3 416 57.5
Gorai.008G257100 Gossypium raimondii HOM05D002505 ORTHO05D007115 4.8e-121 438.7 410 58.0
Gohir.D12G240000 Gossypium hirsutum HOM05D002505 ORTHO05D007115 2.4e-120 436.4 408 57.6
Thecc.03G223700 Theobroma cacao HOM05D002505 ORTHO05D007115 5.4e-120 435.3 417 57.1
CiPaw.11G114300 Carya illinoinensis HOM05D002505 ORTHO05D007115 1.2e-119 434.1 419 55.4
QL02p027659 Quercus lobata HOM05D002505 ORTHO05D007115 2.0e-119 433.3 419 55.4
TWI60G0007 Tripterygium wilfordii HOM05D002505 ORTHO05D007115 2.9e-118 429.5 421 55.8
FAN17G1638 Fragaria x ananassa HOM05D002505 ORTHO05D007115 8.5e-118 427.9 417 54.7
FvH4_4g16080 Fragaria vesca HOM05D002505 ORTHO05D007115 4.2e-117 425.6 387 57.6
FAN12G2820 Fragaria x ananassa HOM05D002505 ORTHO05D007115 4.2e-117 425.6 387 57.6
Cfa011943 Carpinus fangiana HOM05D002505 ORTHO05D007115 1.6e-116 423.7 420 54.3
CANSAT21G2418 Cannabis sativa HOM05D002505 ORTHO05D007115 2.1e-116 423.3 421 55.6
Haze_09143 Corylus avellana HOM05D002505 ORTHO05D007115 4.7e-116 422.2 420 54.3
TAR375G0040 Trochodendron aralioides HOM05D002505 ORTHO05D007115 4.7e-116 422.2 418 54.5
FAN07G1120 Fragaria x ananassa HOM05D002505 ORTHO05D007115 6.1e-116 421.8 417 54.2
FAN22G1998 Fragaria x ananassa HOM05D002505 ORTHO05D007115 4.0e-115 419.1 417 54.0
GSVIVG01019628001 Vitis vinifera HOM05D002505 ORTHO05D007115 1.5e-114 417.2 417 55.2
Aqoxy5G02423 Aquilegia oxysepala HOM05D002505 ORTHO05D007115 2.0e-114 416.8 413 52.1
Prupe.5G127300 Prunus persica HOM05D002505 ORTHO05D007115 2.0e-114 416.8 417 53.0
CsaV3_5G036540 Cucumis sativus L. HOM05D002505 ORTHO05D007115 7.5e-114 414.8 417 54.4
TPR.G36929 Trifolium pratense HOM05D002505 ORTHO05D007115 7.5e-114 414.8 414 53.9
Dinv37391 Davidia involucrata HOM05D002505 ORTHO05D007115 9.8e-114 414.5 386 57.5
MD06G1114600 Malus domestica HOM05D002505 ORTHO05D007115 3.7e-113 412.5 421 52.3
Dinv11454 Davidia involucrata HOM05D002505 ORTHO05D007115 4.9e-113 412.1 419 53.5
Lj2A158G82 Lonicera japonica HOM05D002505 ORTHO05D007115 4.9e-113 412.1 444 52.3
Potri.003G145100 Populus trichocarpa HOM05D002505 ORTHO05D007115 6.3e-113 411.8 394 54.8
Eucgr.D01694 Eucalyptus grandis HOM05D002505 ORTHO05D007115 8.3e-113 411.4 409 54.0
CSS0047752 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D007115 1.1e-112 411.0 413 54.0
Lalb_Chr17g0338531 Lupinus albus HOM05D002505 ORTHO05D007115 1.1e-112 411.0 410 53.7
Ca_12555_v3 Cicer arietinum L. HOM05D002505 ORTHO05D007115 1.4e-112 410.6 416 53.1
Medtr5g025880 Medicago truncatula HOM05D002505 ORTHO05D007115 1.4e-112 410.6 399 54.9
Sed0001422 Sechium edule HOM05D002505 ORTHO05D007115 1.4e-112 410.6 423 53.4
Medtr1g032200 Medicago truncatula HOM05D002505 ORTHO05D007115 3.1e-112 409.5 412 55.1
Aqoxy5G01632 Aquilegia oxysepala HOM05D002505 ORTHO05D007115 5.4e-112 408.7 413 51.6
AUR62007033 Chenopodium quinoa HOM05D002505 ORTHO05D007115 9.1e-112 407.9 416 51.9
Ciclev10020379m.g Citrus clementina HOM05D002505 ORTHO05D007115 2.0e-111 406.8 420 54.8
Nitab4.5_0005042g0030 Nicotiana tabacum HOM05D002505 ORTHO05D007115 4.5e-111 405.6 400 53.8
Sopen08g031180 Solanum pennellii HOM05D002505 ORTHO05D007115 4.5e-111 405.6 416 52.9
ClCG05G020760 Citrullus lanatus HOM05D002505 ORTHO05D007115 7.7e-111 404.8 419 53.2
Manes.02G004600 Manihot esculenta HOM05D002505 ORTHO05D007115 7.7e-111 404.8 420 52.6
VMungo1309G3079 Vigna mungo HOM05D002505 ORTHO05D007115 1.0e-110 404.4 409 53.5
SalBow6G5481 Salvia bowleyana HOM05D002505 ORTHO05D007115 1.3e-110 404.1 420 52.6
Solyc08g082960.3 Solanum lycopersicum HOM05D002505 ORTHO05D007115 2.9e-110 402.9 416 52.4
Cc00_g23270 Coffea canephora HOM05D002505 ORTHO05D007115 3.8e-110 402.5 422 52.1
Psat6g045400 Pisum sativum HOM05D002505 ORTHO05D007115 5.0e-110 402.1 412 51.9
Nitab4.5_0002728g0050 Nicotiana tabacum HOM05D002505 ORTHO05D007115 6.6e-110 401.7 419 52.0
AUR62019897 Chenopodium quinoa HOM05D002505 ORTHO05D007115 8.6e-110 401.4 413 51.6
Oeu010746.1 Olea europaea HOM05D002505 ORTHO05D007115 8.6e-110 401.4 388 55.2
LjContig00141g0018407 Lotus japonicus HOM05D002505 ORTHO05D007115 1.5e-109 400.6 411 52.1
Glyma.06G132900 Glycine max HOM05D002505 ORTHO05D007115 2.5e-109 399.8 389 54.0
HanXRQChr02g0047181 Helianthus annuus HOM05D002505 ORTHO05D007115 2.5e-109 399.8 409 52.6
Phvul.009G039500 Phaseolus vulgaris HOM05D002505 ORTHO05D007115 2.5e-109 399.8 409 53.1
Glyma.04G232000 Glycine max HOM05D002505 ORTHO05D007115 5.6e-109 398.7 388 53.6
Cpa.g.sc175.6 Carica papaya HOM05D002505 ORTHO05D007115 2.8e-108 396.4 393 54.7
Lalb_Chr10g0095811 Lupinus albus HOM05D002505 ORTHO05D007115 1.8e-107 393.7 409 51.8
arahy.Tifrunner.gnm1.ann1.Y3P1ER Arachis hypogaea HOM05D002505 ORTHO05D007115 2.3e-107 393.3 386 53.9
RcHm_v2.0_Chr7g0186571 Rosa chinensis HOM05D002505 ORTHO05D007115 4.0e-107 392.5 417 51.6
PSO339G4385 Papaver somniferum HOM05D002505 ORTHO05D007115 5.2e-107 392.1 418 49.8
arahy.Tifrunner.gnm1.ann1.31YZJ9 Arachis hypogaea HOM05D002505 ORTHO05D007115 1.2e-106 391.0 386 53.9
Sabra01G0062100 Salix brachista HOM05D002505 ORTHO05D007115 1.5e-106 390.6 420 53.3
vmacro11517 Vaccinium macrocarpon HOM05D002505 ORTHO05D007115 4.4e-106 389.0 484 45.7
Peaxi162Scf00074g00358 Petunia axillaris HOM05D002505 ORTHO05D007115 9.8e-106 387.9 393 52.9
MSTRG.2011 Avicennia marina HOM05D002505 ORTHO05D007115 1.7e-105 387.1 403 52.9
Ca_12566_v3 Cicer arietinum L. HOM05D002505 ORTHO05D007115 8.3e-105 384.8 391 52.7
MBI04_g06931_MAGBIO Magnolia biondii HOM05D002505 ORTHO05D007115 1.1e-104 384.4 416 50.7
PGR031G3103 Punica granatum HOM05D002505 ORTHO05D007115 1.4e-104 384.0 367 55.3
MELO3C012450.2 Cucumis melo HOM05D002505 ORTHO05D007115 1.8e-104 383.6 370 55.4
Lsat_1_v5_gn_6_9040 Lactuca sativa HOM05D002505 ORTHO05D007115 1.8e-104 383.6 405 51.6
CDE11G0043 Ceratophyllum demersum HOM05D002505 ORTHO05D007115 9.2e-104 381.3 409 51.1
PSO384G5034 Papaver somniferum HOM05D002505 ORTHO05D007115 1.7e-102 377.1 419 48.4
SGA_v2.0_scaffold104G30125 Striga asiatica HOM05D002505 ORTHO05D007115 1.7e-102 377.1 391 50.4
COL.COLO4_10772 Corchorus olitorius HOM05D002505 ORTHO05D007115 2.3e-102 376.7 359 56.5
Zm00001eb021220 Zea mays HOM05D002505 ORTHO05D007115 3.9e-102 375.9 420 47.6
Nn4g26685 Nelumbo nucifera HOM05D002505 ORTHO05D007115 6.6e-102 375.2 341 58.9
Actinidia22196 Actinidia chinensis HOM05D002505 ORTHO05D007115 8.6e-102 374.8 421 50.8
Migut.J00879 Erythranthe guttata HOM05D002505 ORTHO05D007115 5.6e-101 372.1 391 51.4
Os10g0520700 Oryza sativa ssp. japonica HOM05D002505 ORTHO05D007115 7.3e-101 371.7 402 49.5
PSO017G1033 Papaver somniferum HOM05D002505 ORTHO05D007115 5.8e-98 362.1 390 50.5
Dinv25607 Davidia involucrata HOM05D002505 ORTHO05D007115 7.5e-98 361.7 358 53.6
unitig_22.g5105 Utricularia gibba HOM05D002505 ORTHO05D007115 6.4e-97 358.6 394 48.0
CAN.G567.73 Capsicum annuum HOM05D002505 ORTHO05D007115 9.2e-96 354.8 360 50.8
DCAR_009648 Daucus carota HOM05D002505 ORTHO05D007115 9.2e-96 354.8 397 48.9
PGSC0003DMG400012246 Solanum tuberosum HOM05D002505 ORTHO05D007115 7.8e-95 351.7 354 52.3
ECA240G2126 Erigeron canadensis HOM05D002505 ORTHO05D007115 1.4e-91 340.9 352 50.3
EL10Ac5g12461 Beta vulgaris HOM05D002505 ORTHO05D007115 3.1e-91 339.7 364 47.8
ATR0757G152 Amborella trichopoda HOM05D002505 ORTHO05D007115 5.2e-91 339.0 394 45.9
HPP92_022335 Vanilla planifolia HOM05D002505 ORTHO05D007115 2.0e-90 337.0 427 43.8
SEGI_04382 Sequoiadendron giganteum HOM05D002505 ORTHO05D007115 5.8e-90 335.5 432 42.6
Glyma.13G121900 Glycine max HOM05D002505 ORTHO05D007115 1.3e-89 334.3 331 53.2
HPP92_022360 Vanilla planifolia HOM05D002505 ORTHO05D007115 1.7e-89 334.0 440 43.2
FAN08G0319 Fragaria x ananassa HOM05D002505 ORTHO05D007115 5.6e-85 318.9 301 55.8
SMO348G0019 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 3.1e-75 286.6 368 43.5
Sc22g0004750 Simmondsia chinensis HOM05D002505 ORTHO05D007115 2.7e-71 273.5 238 58.4
Mapoly0049s0078 Marchantia polymorpha HOM05D002505 ORTHO05D007115 3.9e-70 269.6 468 34.8
Pp3c16_17440 Physcomitrium patens HOM05D002505 ORTHO05D007115 3.3e-69 266.5 431 36.7
SEGI_16855 Sequoiadendron giganteum HOM05D002505 ORTHO05D007115 9.3e-64 248.4 313 43.8
AagrBONN_evm.TU.Sc2ySwM_368.1194 Anthoceros agrestis HOM05D002505 ORTHO05D007115 5.3e-59 232.6 305 42.0
Hma1.2p1_0456F.1_g156510 Hydrangea macrophylla HOM05D002505 ORTHO05D007115 1.5e-58 231.1 227 52.9
vmacro04587 Vaccinium macrocarpon HOM05D002505 ORTHO05D007115 7.6e-58 228.8 353 41.9
RcHm_v2.0_Chr7g0184121 Rosa chinensis HOM05D002505 ORTHO05D007115 1.6e-55 221.1 202 55.0
FAN13G3213 Fragaria x ananassa HOM05D002505 ORTHO05D007115 7.9e-55 218.8 191 57.6
RhsimUnG0115700 Rhododendron simsii HOM05D002505 ORTHO05D007115 1.5e-50 204.5 270 42.2
Potri.001G085800 Populus trichocarpa HOM05D002505 ORTHO05D007115 7.6e-50 202.2 188 53.7
Medtr1g090530 Medicago truncatula HOM05D002505 ORTHO05D007115 4.8e-44 183.0 230 45.2
Atru.chr5.482 Acer truncatum HOM05D002505 ORTHO05D007115 8.4e-41 172.2 161 56.5
MCO07G240 Micromonas commoda HOM05D002505 ORTHO05D007115 2.5e-37 160.6 401 29.7
CBR_g20449 Chara braunii HOM05D002505 ORTHO05D007115 8.2e-36 155.6 330 30.6
Atru.chr5.483 Acer truncatum HOM05D002505 ORTHO05D007115 3.1e-35 153.7 132 62.1
SMO285G0002 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 1.4e-32 144.8 292 32.9
FAN05G1175 Fragaria x ananassa HOM05D002505 ORTHO05D007115 6.1e-31 139.4 123 59.3
FvH4_5g11280 Fragaria vesca HOM05D002505 ORTHO05D007115 3.3e-29 133.7 109 60.6
Zm00001eb044440 Zea mays HOM05D002505 ORTHO05D007115 2.2e-28 131.0 163 46.6
Rhsim10G0016900 Rhododendron simsii HOM05D000068 ORTHO05D004691 4.1e-27 126.7 139 52.5
BraA06t26113Z Brassica rapa HOM05D005837 ORTHO05D007594 8.5e-25 119.0 100 66.0
Sc22g0004760 Simmondsia chinensis HOM05D002505 ORTHO05D007115 2.0e-18 97.8 95 53.7
Actinidia04163 Actinidia chinensis HOM05D002436 ORTHO05D002754 4.5e-18 96.7 163 35.6
RcHm_v2.0_Chr7g0184131 Rosa chinensis HOM05D002505 ORTHO05D007115 6.5e-17 92.8 72 61.1
FAN14G3314 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.1e-16 92.0 134 38.8
Oeu004999.3 Olea europaea HOM05D002505 ORTHO05D007115 1.5e-16 91.7 142 40.8
Cre08.g379050 Chlamydomonas reinhardtii HOM05D002505 ORTHO05D007115 1.5e-13 81.6 328 24.7
FvH4_3g32050 Fragaria vesca HOM05D002505 ORTHO05D045879 1.0e-09 68.9 89 42.7
CSS0027773 Camellia sinensis var. sinensis HOM05D003159 ORTHO05D003780 3.8e-09 67.0 73 50.7
SMO348G0061 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 4.7e-07 60.1 134 32.1


User provided reference genes

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