Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s2446 Capsella rubella HOM05D006058 ORTHO05D007686 1.1e-77 293.1 142 100.0
BcaC01g02630 Brassica carinata HOM05D006058 ORTHO05D007686 1.4e-67 259.6 138 90.6
A06p30300 Brassica napus HOM05D006058 ORTHO05D007686 1.4e-67 259.6 138 90.6
C03p62750 Brassica napus HOM05D006058 ORTHO05D007686 1.4e-67 259.6 138 90.6
BraA06t25979Z Brassica rapa HOM05D006058 ORTHO05D007686 1.8e-67 259.2 138 89.9
BolC3t18529H Brassica oleracea HOM05D006058 ORTHO05D007686 4.0e-67 258.1 138 89.9
AL8G40840 Arabidopsis lyrata HOM05D006058 ORTHO05D007686 5.3e-67 257.7 138 90.6
BcaB02g09737 Brassica carinata HOM05D006058 ORTHO05D007686 1.3e-65 253.1 140 87.9
Sp2g26790 Schrenkiella parvula HOM05D006058 ORTHO05D007686 1.4e-64 249.6 140 87.1
BcaC03g18221 Brassica carinata HOM05D006058 ORTHO05D007686 3.2e-64 248.4 140 85.7
BolC2t12363H Brassica oleracea HOM05D006058 ORTHO05D007686 3.2e-64 248.4 140 85.7
AT5G63690 Arabidopsis thaliana HOM05D006058 ORTHO05D007686 7.1e-64 247.3 138 87.0
BcaB07g29701 Brassica carinata HOM05D006058 ORTHO05D007686 1.3e-62 243.0 140 85.0
C02p62900 Brassica napus HOM05D006058 ORTHO05D007686 1.5e-61 239.6 144 81.9
A02p42950 Brassica napus HOM05D006058 ORTHO05D007686 2.5e-61 238.8 140 82.9
Thhalv10005102m.g Eutrema salsugineum HOM05D006058 ORTHO05D007686 2.1e-60 235.7 138 81.9
CARHR277600 Cardamine hirsuta HOM05D006058 ORTHO05D007686 5.3e-59 231.1 135 82.2
BraA02t09218Z Brassica rapa HOM05D006058 ORTHO05D007686 4.5e-58 228.0 134 82.1
Aa31LG10G11090 Aethionema arabicum HOM05D006058 ORTHO05D007686 1.3e-57 226.5 137 77.4
THA.LOC104826323 Tarenaya hassleriana HOM05D006058 ORTHO05D007686 1.8e-51 206.1 136 70.6
DCAR_018372 Daucus carota HOM05D006058 ORTHO05D007686 2.0e-50 202.6 137 67.9
Hma1.2p1_1049F.1_g251900 Hydrangea macrophylla HOM05D006058 ORTHO05D007686 3.4e-50 201.8 140 68.6
CSS0022820 Camellia sinensis var. sinensis HOM05D006058 ORTHO05D007686 5.9e-50 201.1 140 67.1
Sc26g0003460 Simmondsia chinensis HOM05D006058 ORTHO05D007686 1.3e-49 199.9 137 67.2
GSVIVG01011025001 Vitis vinifera HOM05D006058 ORTHO05D007686 1.7e-49 199.5 139 66.2
Duzib211G0114 Durio zibethinus HOM05D006058 ORTHO05D007686 2.9e-49 198.7 139 66.2
Hma1.2p1_0399F.1_g144340 Hydrangea macrophylla HOM05D006058 ORTHO05D007686 2.9e-49 198.7 140 67.9
Manes.07G087200 Manihot esculenta HOM05D006058 ORTHO05D007686 2.9e-49 198.7 137 67.2
Thecc.01G288100 Theobroma cacao HOM05D006058 ORTHO05D007686 2.9e-49 198.7 139 66.2
CANSAT25G3509 Cannabis sativa HOM05D006058 ORTHO05D007686 3.8e-49 198.4 133 68.4
Peaxi162Scf00273g00034 Petunia axillaris HOM05D006058 ORTHO05D007686 5.0e-49 198.0 137 67.2
Lalb_Chr07g0187491 Lupinus albus HOM05D006058 ORTHO05D007686 8.5e-49 197.2 140 65.7
MD12G1212600 Malus domestica HOM05D006058 ORTHO05D007686 1.1e-48 196.8 142 67.6
TWI23G1093 Tripterygium wilfordii HOM05D006058 ORTHO05D007686 1.4e-48 196.4 137 64.2
Psat4g228760 Pisum sativum HOM05D006058 ORTHO05D007686 1.9e-48 196.1 137 65.7
Eucgr.H01614 Eucalyptus grandis HOM05D006058 ORTHO05D007686 2.5e-48 195.7 137 65.7
Nitab4.5_0009592g0010 Nicotiana tabacum HOM05D006058 ORTHO05D007686 3.2e-48 195.3 137 65.7
Potri.014G083500 Populus trichocarpa HOM05D006058 ORTHO05D007686 3.2e-48 195.3 139 61.9
SGA_v2.0_scaffold130G34295 Striga asiatica HOM05D006058 ORTHO05D007686 4.2e-48 194.9 133 67.7
AUR62036672 Chenopodium quinoa HOM05D006058 ORTHO05D007686 5.5e-48 194.5 137 65.0
vmacro02518 Vaccinium macrocarpon HOM05D006058 ORTHO05D007686 5.5e-48 194.5 140 65.0
Nitab4.5_0001499g0140 Nicotiana tabacum HOM05D006058 ORTHO05D007686 7.2e-48 194.1 139 64.7
RcHm_v2.0_Chr6g0292311 Rosa chinensis HOM05D006058 ORTHO05D007686 7.2e-48 194.1 136 66.9
unitig_0.g1187 Utricularia gibba HOM05D006058 ORTHO05D007686 7.2e-48 194.1 134 64.2
PGR119G2453 Punica granatum HOM05D006058 ORTHO05D007686 9.4e-48 193.7 138 65.2
Nn4g26080 Nelumbo nucifera HOM05D006058 ORTHO05D007686 1.2e-47 193.4 139 64.7
Oeu032852.1 Olea europaea HOM05D006058 ORTHO05D007686 1.2e-47 193.4 134 67.2
MD04G1200100 Malus domestica HOM05D006058 ORTHO05D007686 1.6e-47 193.0 142 66.9
Medtr3g010210 Medicago truncatula HOM05D006058 ORTHO05D007686 1.6e-47 193.0 137 64.2
Aqoxy4G03219 Aquilegia oxysepala HOM05D006058 ORTHO05D007686 3.6e-47 191.8 139 65.5
Prupe.8G268000 Prunus persica HOM05D006058 ORTHO05D007686 6.1e-47 191.0 139 66.9
Sabra02G0198900 Salix brachista HOM05D006058 ORTHO05D007686 7.9e-47 190.7 139 61.2
COL.COLO4_08051 Corchorus olitorius HOM05D006058 ORTHO05D007686 1.0e-46 190.3 139 65.5
Gohir.A12G007700 Gossypium hirsutum HOM05D006058 ORTHO05D007686 1.0e-46 190.3 139 62.6
Lj2g0026207 Lotus japonicus HOM05D006058 ORTHO05D007686 1.4e-46 189.9 139 64.7
Nitab4.5_0004672g0030 Nicotiana tabacum HOM05D006058 ORTHO05D007686 1.8e-46 189.5 137 63.5
TPR.G16722 Trifolium pratense HOM05D006058 ORTHO05D007686 1.8e-46 189.5 137 62.0
TPR.G8807 Trifolium pratense HOM05D006058 ORTHO05D007686 2.3e-46 189.1 137 60.6
MBI07_g41269_MAGBIO Magnolia biondii HOM05D006058 ORTHO05D007686 3.0e-46 188.7 136 64.7
Atru.chr5.1299 Acer truncatum HOM05D006058 ORTHO05D007686 6.7e-46 187.6 139 64.7
Ca_03230_v3 Cicer arietinum L. HOM05D006058 ORTHO05D007686 6.7e-46 187.6 137 64.2
FvH4_2g24470 Fragaria vesca HOM05D006058 ORTHO05D007686 6.7e-46 187.6 136 64.7
FAN24G0575 Fragaria x ananassa HOM05D006058 ORTHO05D007686 6.7e-46 187.6 136 64.7
FAN27G3183 Fragaria x ananassa HOM05D006058 ORTHO05D007686 6.7e-46 187.6 136 64.7
Peaxi162Scf00026g00313 Petunia axillaris HOM05D006058 ORTHO05D007686 6.7e-46 187.6 137 65.0
Hund02088 Selenicereus undatus HOM05D006058 ORTHO05D007686 8.8e-46 187.2 137 62.8
Glyma.01G089000 Glycine max HOM05D006058 ORTHO05D007686 1.1e-45 186.8 136 64.0
Glyma.04G146600 Glycine max HOM05D006058 ORTHO05D007686 1.1e-45 186.8 136 64.0
SalBow3G0902 Salvia bowleyana HOM05D006058 ORTHO05D007686 1.5e-45 186.4 133 65.4
TAR636G0052 Trochodendron aralioides HOM05D006058 ORTHO05D007686 2.0e-45 186.0 139 64.0
Gohir.D12G007100 Gossypium hirsutum HOM05D006058 ORTHO05D007686 2.6e-45 185.7 139 61.2
Phvul.002G050500 Phaseolus vulgaris HOM05D006058 ORTHO05D007686 2.6e-45 185.7 139 60.4
Cc01_g20070 Coffea canephora HOM05D006058 ORTHO05D007686 3.3e-45 185.3 142 61.3
MELO3C015303.2 Cucumis melo HOM05D006058 ORTHO05D007686 4.4e-45 184.9 137 60.6
CsaV3_1G038790 Cucumis sativus L. HOM05D006058 ORTHO05D007686 4.4e-45 184.9 137 60.6
HanXRQChr03g0093951 Helianthus annuus HOM05D006058 ORTHO05D007686 7.4e-45 184.1 140 60.7
Ah.10g033440 Amaranthus hybridus HOM05D006058 ORTHO05D007686 9.7e-45 183.7 137 62.0
Gorai.008G007300 Gossypium raimondii HOM05D006058 ORTHO05D007686 9.7e-45 183.7 136 60.3
PSO170G2912 Papaver somniferum HOM05D006058 ORTHO05D007686 1.7e-44 183.0 139 64.0
vmacro04594 Vaccinium macrocarpon HOM05D006058 ORTHO05D007686 2.2e-44 182.6 135 63.7
PSO407G0089 Papaver somniferum HOM05D006058 ORTHO05D007686 3.7e-44 181.8 139 63.3
CiPaw.07G098200 Carya illinoinensis HOM05D006058 ORTHO05D007686 6.3e-44 181.0 139 63.3
CDE02G3716 Ceratophyllum demersum HOM05D006058 ORTHO05D007686 6.3e-44 181.0 138 59.4
HanXRQChr15g0476421 Helianthus annuus HOM05D006058 ORTHO05D007686 6.3e-44 181.0 139 61.9
Ciclev10022776m.g Citrus clementina HOM05D006058 ORTHO05D007686 1.1e-43 180.3 141 61.7
TPR.G22635 Trifolium pratense HOM05D006058 ORTHO05D007686 1.4e-43 179.9 137 59.9
Cfa006057 Carpinus fangiana HOM05D006058 ORTHO05D007686 2.4e-43 179.1 139 63.3
Lju470C11T9 Lonicera japonica HOM05D006058 ORTHO05D007686 2.4e-43 179.1 137 63.5
arahy.Tifrunner.gnm1.ann1.SHER6S Arachis hypogaea HOM05D006058 ORTHO05D007686 3.1e-43 178.7 122 68.0
arahy.Tifrunner.gnm1.ann1.Y2QWLJ Arachis hypogaea HOM05D006058 ORTHO05D007686 6.9e-43 177.6 122 68.0
Solyc12g014020.2 Solanum lycopersicum HOM05D006058 ORTHO05D007686 1.2e-42 176.8 124 66.1
Sopen12g005770 Solanum pennellii HOM05D006058 ORTHO05D007686 1.2e-42 176.8 124 66.1
BolC4t22707H Brassica oleracea HOM05D006058 ORTHO05D007686 1.5e-42 176.4 108 74.1
Prupe.3G123100 Prunus persica HOM05D006058 ORTHO05D007686 5.9e-42 174.5 139 63.3
PGSC0003DMG400015370 Solanum tuberosum HOM05D006058 ORTHO05D007686 7.7e-42 174.1 124 65.3
Actinidia00707 Actinidia chinensis HOM05D006058 ORTHO05D007686 1.0e-41 173.7 123 67.5
Rhsim13G0018500 Rhododendron simsii HOM05D003625 ORTHO05D004382 1.3e-41 173.3 120 68.3
QL12p042454 Quercus lobata HOM05D006058 ORTHO05D007686 2.9e-41 172.2 138 60.9
Hund29081 Selenicereus undatus HOM05D006058 ORTHO05D007686 5.0e-41 171.4 129 60.5
Hund29083 Selenicereus undatus HOM05D006058 ORTHO05D007686 5.0e-41 171.4 129 60.5
SHI14488 Sapria himalayana HOM05D006058 ORTHO05D007686 8.5e-41 170.6 140 58.6
Zm00001eb106990 Zea mays HOM05D006058 ORTHO05D007686 1.1e-40 170.2 138 56.5
EL10Ac7g17168 Beta vulgaris HOM05D006058 ORTHO05D007686 7.9e-39 164.1 137 56.2
VMungo1215G3318 Vigna mungo HOM05D006058 ORTHO05D007686 1.8e-38 162.9 118 62.7
Migut.D00240 Erythranthe guttata HOM05D006058 ORTHO05D007686 1.1e-37 160.2 139 54.7
Prupe.8G250400 Prunus persica HOM05D006058 ORTHO05D007686 2.6e-37 159.1 105 69.5
SEGI_21939 Sequoiadendron giganteum HOM05D006058 ORTHO05D007686 1.3e-36 156.8 140 52.1
CAN.G964.10 Capsicum annuum HOM05D006058 ORTHO05D007686 1.4e-35 153.3 138 55.8
Eucgr.H01617 Eucalyptus grandis HOM05D006058 ORTHO05D007686 1.4e-35 153.3 137 55.5
HPP92_016068 Vanilla planifolia HOM05D006058 ORTHO05D007686 1.4e-35 153.3 136 55.1
Sed0020474 Sechium edule HOM05D006058 ORTHO05D007686 5.3e-35 151.4 104 64.4
ClCG03G017360 Citrullus lanatus HOM05D006058 ORTHO05D007686 7.0e-35 151.0 106 61.3
Aa31LG1G18150 Aethionema arabicum HOM05D000706 ORTHO05D001554 1.2e-34 150.2 85 77.6
Nn3g21231 Nelumbo nucifera HOM05D006058 ORTHO05D007686 1.2e-34 150.2 117 59.0
ECA240G0292 Erigeron canadensis HOM05D006058 ORTHO05D007686 1.7e-33 146.4 113 60.2
Manes.10G061700 Manihot esculenta HOM05D006058 ORTHO05D007686 2.9e-33 145.6 131 53.4
SMO244G0033 Selaginella moellendorffii HOM05D006058 ORTHO05D007686 2.5e-32 142.5 123 56.1
Mapoly0122s0023 Marchantia polymorpha HOM05D006058 ORTHO05D007686 7.2e-32 141.0 131 51.1
ATR0225G019 Amborella trichopoda HOM05D006058 ORTHO05D007686 2.3e-30 136.0 110 59.1
AagrBONN_evm.TU.Sc2ySwM_369.269 Anthoceros agrestis HOM05D006058 ORTHO05D007686 5.2e-30 134.8 119 52.1
Mapoly0068s0046 Marchantia polymorpha HOM05D006058 ORTHO05D007686 8.8e-30 134.0 114 52.6
EL10Ac3g06921 Beta vulgaris HOM05D006058 ORTHO05D007686 9.7e-29 130.6 93 67.7
Pp3c3_34830 Physcomitrium patens HOM05D006058 ORTHO05D007686 2.8e-28 129.0 122 50.8
AUR62034597 Chenopodium quinoa HOM05D006058 ORTHO05D007686 3.7e-28 128.6 96 63.5
CBR_g26410 Chara braunii HOM05D006058 ORTHO05D007686 4.8e-28 128.3 119 51.3
Sc05g0004330 Simmondsia chinensis HOM05D006058 ORTHO05D007686 5.5e-24 114.8 87 63.2
TAR365G0318 Trochodendron aralioides HOM05D006058 ORTHO05D007686 1.0e-22 110.5 81 59.3
CBR_g24266 Chara braunii HOM05D006058 ORTHO05D007686 1.2e-21 107.1 123 43.9
MBI07_g41268_MAGBIO Magnolia biondii HOM05D002731 ORTHO05D003073 1.3e-17 93.6 90 48.9
QL12p023442 Quercus lobata HOM05D006058 ORTHO05D007686 3.4e-13 79.0 93 44.1
vmacro09159 Vaccinium macrocarpon HOM05D006058 ORTHO05D007686 1.1e-11 73.9 54 63.0
CAN.G27.69 Capsicum annuum HOM05D005779 ORTHO05D007040 8.9e-06 54.3 48 47.9


User provided reference genes

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