Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s2416 Capsella rubella HOM05D004927 ORTHO05D005798 1.2e-78 296.6 163 100.0
AL8G40520 Arabidopsis lyrata HOM05D004927 ORTHO05D005798 9.7e-73 276.9 163 91.4
AT5G63460 Arabidopsis thaliana HOM05D004927 ORTHO05D005798 3.1e-71 271.9 163 90.2
Sp2g26540 Schrenkiella parvula HOM05D004927 ORTHO05D005798 5.9e-70 267.7 163 90.2
Thhalv10005047m.g Eutrema salsugineum HOM05D004927 ORTHO05D005798 5.0e-69 264.6 163 87.7
BcaC04g23330 Brassica carinata HOM05D004927 ORTHO05D005798 4.8e-64 248.1 163 84.7
CARHR277310 Cardamine hirsuta HOM05D004927 ORTHO05D005798 2.0e-62 242.7 163 80.4
Aa31LG1G18580 Aethionema arabicum HOM05D004927 ORTHO05D005798 8.5e-61 237.3 162 78.4
A09p08260 Brassica napus HOM05D004927 ORTHO05D005798 1.4e-58 229.9 151 84.1
C09p09350 Brassica napus HOM05D000789 ORTHO05D005798 5.1e-58 228.0 151 83.4
BolC9t53847H Brassica oleracea HOM05D000789 ORTHO05D005798 5.1e-58 228.0 151 83.4
BcaB04g19918 Brassica carinata HOM05D004927 ORTHO05D005798 2.2e-56 222.6 152 82.2
THA.LOC104798947 Tarenaya hassleriana HOM05D004927 ORTHO05D005798 2.2e-56 222.6 165 74.5
THA.LOC104818187 Tarenaya hassleriana HOM05D004927 ORTHO05D005798 2.8e-56 222.2 165 76.4
BraA09t36477Z Brassica rapa HOM05D004927 ORTHO05D005798 2.4e-55 219.2 164 76.8
TWI23G0043 Tripterygium wilfordii HOM05D004927 ORTHO05D005798 2.0e-49 199.5 166 69.3
Ciclev10022591m.g Citrus clementina HOM05D004927 ORTHO05D005798 1.2e-46 190.3 165 68.5
Prupe.5G152100 Prunus persica HOM05D004927 ORTHO05D005798 3.5e-46 188.7 170 68.2
Gohir.D11G039650 Gossypium hirsutum HOM05D004927 ORTHO05D005798 7.7e-46 187.6 164 67.1
Manes.14G051700 Manihot esculenta HOM05D004927 ORTHO05D005798 1.0e-45 187.2 167 65.9
Potri.015G094600 Populus trichocarpa HOM05D004927 ORTHO05D005798 1.7e-45 186.4 169 66.3
Dinv11165 Davidia involucrata HOM05D004927 ORTHO05D005798 2.9e-45 185.7 169 65.1
Dinv23136 Davidia involucrata HOM05D004927 ORTHO05D005798 3.8e-45 185.3 166 65.7
Thecc.03G128000 Theobroma cacao HOM05D004927 ORTHO05D005798 5.0e-45 184.9 168 68.5
Duzib068G0304 Durio zibethinus HOM05D004927 ORTHO05D005798 1.9e-44 183.0 166 64.5
Actinidia25582 Actinidia chinensis HOM05D004927 ORTHO05D005798 2.5e-44 182.6 165 65.5
CiPaw.12G042500 Carya illinoinensis HOM05D004927 ORTHO05D005798 2.5e-44 182.6 168 63.7
Potri.012G096900 Populus trichocarpa HOM05D004927 ORTHO05D005798 2.5e-44 182.6 166 66.3
Gohir.A11G036100 Gossypium hirsutum HOM05D004927 ORTHO05D005798 4.2e-44 181.8 164 66.5
Duzib205G1407 Durio zibethinus HOM05D004927 ORTHO05D005798 9.4e-44 180.6 167 65.3
Gorai.007G042600 Gossypium raimondii HOM05D004927 ORTHO05D005798 1.6e-43 179.9 168 64.9
MD06G1142800 Malus domestica HOM05D004927 ORTHO05D005798 3.6e-43 178.7 169 64.5
GSVIVG01008533001 Vitis vinifera HOM05D004927 ORTHO05D005798 4.7e-43 178.3 171 62.0
CiPaw.11G008400 Carya illinoinensis HOM05D004927 ORTHO05D005798 8.0e-43 177.6 163 63.8
CSS0046411 Camellia sinensis var. sinensis HOM05D004927 ORTHO05D005798 1.8e-42 176.4 165 62.4
PGR083G0131 Punica granatum HOM05D004927 ORTHO05D005798 2.3e-42 176.0 163 59.5
TWI39G0602 Tripterygium wilfordii HOM05D004927 ORTHO05D005798 4.0e-42 175.3 164 62.2
Actinidia33102 Actinidia chinensis HOM05D004927 ORTHO05D005798 6.8e-42 174.5 165 63.0
CANSAT80G0771 Cannabis sativa HOM05D004927 ORTHO05D005798 3.4e-41 172.2 167 60.5
Glyma.05G047500 Glycine max HOM05D004927 ORTHO05D005798 5.7e-41 171.4 151 62.9
Actinidia08867 Actinidia chinensis HOM05D004927 ORTHO05D005798 3.7e-40 168.7 166 63.3
MD14G1158000 Malus domestica HOM05D004927 ORTHO05D005798 3.7e-40 168.7 169 61.5
Phvul.003G210400 Phaseolus vulgaris HOM05D004927 ORTHO05D005798 4.8e-40 168.3 155 61.9
vmacro19200 Vaccinium macrocarpon HOM05D004927 ORTHO05D005798 2.4e-39 166.0 160 63.8
Atru.chr9.1061 Acer truncatum HOM05D004927 ORTHO05D005798 3.1e-39 165.6 156 64.7
Nn3g16487 Nelumbo nucifera HOM05D004927 ORTHO05D005798 5.9e-38 161.4 168 57.7
Cc04_g10030 Coffea canephora HOM05D004927 ORTHO05D005798 7.7e-38 161.0 167 58.1
Glyma.17G129300 Glycine max HOM05D004927 ORTHO05D005798 1.0e-37 160.6 144 62.5
Solyc03g111270.2 Solanum lycopersicum HOM05D004927 ORTHO05D005798 1.0e-37 160.6 160 58.8
Sopen03g030400 Solanum pennellii HOM05D004927 ORTHO05D005798 1.0e-37 160.6 160 58.8
FvH4_5g08180 Fragaria vesca HOM05D004927 ORTHO05D005798 1.3e-37 160.2 164 58.5
MSTRG.4598 Avicennia marina HOM05D004927 ORTHO05D005798 2.9e-37 159.1 166 59.0
Oeu056013.1 Olea europaea HOM05D004927 ORTHO05D005798 3.8e-37 158.7 167 59.3
Lalb_Chr13g0297281 Lupinus albus HOM05D004927 ORTHO05D005798 5.0e-37 158.3 149 61.7
Lalb_Chr12g0202181 Lupinus albus HOM05D004927 ORTHO05D005798 2.5e-36 156.0 153 60.1
Sabra12G0070900 Salix brachista HOM05D004927 ORTHO05D005798 4.2e-36 155.2 169 58.0
RcHm_v2.0_Chr7g0190331 Rosa chinensis HOM05D004927 ORTHO05D005798 7.2e-36 154.5 169 58.6
Gorai.006G271700 Gossypium raimondii HOM05D004927 ORTHO05D005798 9.4e-36 154.1 167 58.1
Nitab4.5_0003005g0020 Nicotiana tabacum HOM05D004927 ORTHO05D005798 1.2e-35 153.7 165 58.2
MELO3C026211.2 Cucumis melo HOM05D004927 ORTHO05D005798 2.1e-35 152.9 154 61.7
CsaV3_1G000620 Cucumis sativus L. HOM05D004927 ORTHO05D005798 2.7e-35 152.5 154 61.7
Oeu018539.1 Olea europaea HOM05D004927 ORTHO05D005798 2.7e-35 152.5 162 57.4
MSTRG.11279 Avicennia marina HOM05D004927 ORTHO05D005798 3.6e-35 152.1 170 57.1
Manes.06G118800 Manihot esculenta HOM05D004927 ORTHO05D005798 4.7e-35 151.8 156 59.0
Sabra15G0116000 Salix brachista HOM05D004927 ORTHO05D005798 4.7e-35 151.8 185 55.1
Sc04g0000700 Simmondsia chinensis HOM05D004927 ORTHO05D005798 6.1e-35 151.4 163 58.3
SGA_v2.0_scaffold215G42324 Striga asiatica HOM05D004927 ORTHO05D005798 8.0e-35 151.0 159 56.6
MBI07_g34620_MAGBIO Magnolia biondii HOM05D004927 ORTHO05D005798 1.4e-34 150.2 164 59.1
Lj4g0014142 Lotus japonicus HOM05D004927 ORTHO05D005798 1.8e-34 149.8 147 57.8
HanXRQChr09g0273101 Helianthus annuus HOM05D004927 ORTHO05D005798 1.2e-33 147.1 161 55.9
Sed0011812 Sechium edule HOM05D004927 ORTHO05D005798 1.2e-33 147.1 162 59.3
VMungo1215G0874 Vigna mungo HOM05D004927 ORTHO05D005798 1.2e-33 147.1 137 62.0
HanXRQChr07g0193231 Helianthus annuus HOM05D004927 ORTHO05D005798 2.0e-33 146.4 154 57.1
FAN18G3853 Fragaria x ananassa HOM05D004927 ORTHO05D005798 2.6e-33 146.0 153 58.2
FAN13G0393 Fragaria x ananassa HOM05D004927 ORTHO05D005798 3.4e-33 145.6 154 59.1
Dinv04882 Davidia involucrata HOM05D004927 ORTHO05D005798 4.4e-33 145.2 127 66.9
Rhsim08G0189300 Rhododendron simsii HOM05D004927 ORTHO05D005798 5.7e-33 144.8 184 52.7
ECA247G2750 Erigeron canadensis HOM05D004927 ORTHO05D005798 9.8e-33 144.1 152 59.2
Gohir.A09G247250 Gossypium hirsutum HOM05D004927 ORTHO05D005798 9.8e-33 144.1 156 59.6
FAN04G0012 Fragaria x ananassa HOM05D004927 ORTHO05D005798 1.7e-32 143.3 153 58.2
unitig_61.g26197 Utricularia gibba HOM05D004927 ORTHO05D005798 2.8e-32 142.5 171 52.0
Medtr4g103580 Medicago truncatula HOM05D004927 ORTHO05D005798 3.7e-32 142.1 162 50.6
Lsat_1_v5_gn_1_29040 Lactuca sativa HOM05D004927 ORTHO05D005798 4.8e-32 141.7 165 55.8
TAR622G0157 Trochodendron aralioides HOM05D004927 ORTHO05D005798 4.8e-32 141.7 148 56.8
PSO063G5502 Papaver somniferum HOM05D004927 ORTHO05D005798 8.3e-32 141.0 161 55.3
SGA_v2.0_scaffold161G37795 Striga asiatica HOM05D004927 ORTHO05D005798 1.1e-31 140.6 204 48.0
Aqoxy3G01521 Aquilegia oxysepala HOM05D004927 ORTHO05D005798 1.4e-31 140.2 157 56.7
CDE02G1054 Ceratophyllum demersum HOM05D004927 ORTHO05D005798 1.8e-31 139.8 142 59.2
HPP92_001413 Vanilla planifolia HOM05D004927 ORTHO05D005798 2.4e-31 139.4 147 57.8
Migut.D01264 Erythranthe guttata HOM05D004927 ORTHO05D005798 3.1e-31 139.0 157 57.3
FAN08G3438 Fragaria x ananassa HOM05D004927 ORTHO05D005798 3.1e-31 139.0 154 57.1
Gorai.004G275800 Gossypium raimondii HOM05D004927 ORTHO05D005798 5.4e-31 138.3 166 54.8
AagrBONN_evm.TU.Sc2ySwM_344.432 Anthoceros agrestis HOM05D004927 ORTHO05D005798 1.6e-30 136.7 141 54.6
TPR.G19215 Trifolium pratense HOM05D004927 ORTHO05D005798 1.6e-30 136.7 153 53.6
arahy.Tifrunner.gnm1.ann1.9DG48R Arachis hypogaea HOM05D004927 ORTHO05D005798 2.0e-30 136.3 132 61.4
arahy.Tifrunner.gnm1.ann1.PKYK26 Arachis hypogaea HOM05D004927 ORTHO05D005798 2.0e-30 136.3 132 61.4
BolC2t12346H Brassica oleracea HOM05D001512 ORTHO05D001574 2.7e-30 136.0 113 71.7
Psat0s2546g0040 Pisum sativum HOM05D004927 ORTHO05D005798 2.7e-30 136.0 147 51.7
Haze_07225 Corylus avellana HOM05D004927 ORTHO05D005798 4.5e-30 135.2 120 65.8
C02p62750 Brassica napus HOM05D001512 ORTHO05D001574 1.3e-29 133.7 113 70.8
SalBow1G5982 Salvia bowleyana HOM05D004927 ORTHO05D005798 6.6e-29 131.3 136 60.3
DCAR_026226 Daucus carota HOM05D004927 ORTHO05D005798 3.3e-28 129.0 154 54.5
QL10p003733 Quercus lobata HOM05D004927 ORTHO05D005798 4.2e-28 128.6 127 59.1
PSO478G0696 Papaver somniferum HOM05D004927 ORTHO05D005798 5.5e-28 128.3 159 50.9
BcaC03g18207 Brassica carinata HOM05D004927 ORTHO05D005798 9.5e-28 127.5 149 58.4
PSO017G7268 Papaver somniferum HOM05D004927 ORTHO05D005798 1.6e-27 126.7 183 47.5
Lsat_1_v5_gn_4_80380 Lactuca sativa HOM05D004927 ORTHO05D005798 1.4e-26 123.6 161 53.4
Gohir.D08G258600 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.8e-26 123.2 156 55.8
Zm00001eb169640 Zea mays HOM05D004927 ORTHO05D005798 1.8e-26 123.2 166 50.0
PSO782G2667 Papaver somniferum HOM05D004927 ORTHO05D005798 6.8e-26 121.3 152 51.3
Os12g0442900 Oryza sativa ssp. japonica HOM05D004927 ORTHO05D005798 2.0e-25 119.8 149 50.3
SalBow1G7483 Salvia bowleyana HOM05D004927 ORTHO05D005798 2.6e-25 119.4 169 49.7
EL10As4g23391 Beta vulgaris HOM05D004927 ORTHO05D005798 4.4e-25 118.6 169 48.5
Os11g0483600 Oryza sativa ssp. japonica HOM05D004927 ORTHO05D005798 9.8e-25 117.5 164 47.6
CBR_g27958 Chara braunii HOM05D004927 ORTHO05D005798 2.8e-24 115.9 163 50.3
Nitab4.5_0016919g0010 Nicotiana tabacum HOM05D004927 ORTHO05D005798 8.3e-24 114.4 138 52.9
Pp3c8_10310 Physcomitrium patens HOM05D004927 ORTHO05D005798 1.8e-23 113.2 152 49.3
Gohir.A09G246700 Gossypium hirsutum HOM05D004927 ORTHO05D005798 3.2e-23 112.5 97 66.0
Lj9A478G96 Lonicera japonica HOM05D004927 ORTHO05D005798 3.5e-22 109.0 146 52.7
ClCG06G017840 Citrullus lanatus HOM05D004927 ORTHO05D005798 5.9e-22 108.2 95 66.3
Eucgr.B00112 Eucalyptus grandis HOM05D004927 ORTHO05D005798 1.3e-21 107.1 111 59.5
PGSC0003DMG400015243 Solanum tuberosum HOM05D004927 ORTHO05D005798 1.3e-21 107.1 167 49.7
vmacro16676 Vaccinium macrocarpon HOM05D004927 ORTHO05D005798 1.7e-21 106.7 114 61.4
CBR_g36334 Chara braunii HOM05D004927 ORTHO05D005798 2.9e-21 105.9 171 47.4
CDE05G1557 Ceratophyllum demersum HOM05D004927 ORTHO05D005798 1.1e-20 104.0 113 56.6
ATR0561G036 Amborella trichopoda HOM05D004927 ORTHO05D005798 1.6e-19 100.1 126 50.8
Migut.I00501 Erythranthe guttata HOM05D004927 ORTHO05D005798 8.9e-18 94.4 93 57.0
COL.COLO4_28098 Corchorus olitorius HOM05D004927 ORTHO05D005798 7.5e-17 91.3 94 59.6
SMO334G0034 Selaginella moellendorffii HOM05D004927 ORTHO05D005798 1.7e-16 90.1 143 45.5
BraA02t09201Z Brassica rapa HOM05D004927 ORTHO05D005798 2.2e-16 89.7 92 65.2
Mapoly0121s0035 Marchantia polymorpha HOM05D004927 ORTHO05D005798 2.2e-16 89.7 109 52.3
HPP92_001420 Vanilla planifolia HOM05D004927 ORTHO05D005798 2.9e-16 89.4 74 64.9
CAN.G352.25 Capsicum annuum HOM05D004927 ORTHO05D005798 1.1e-15 87.4 83 60.2
Gohir.D09G248000 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.2e-14 84.0 75 58.7
Gohir.D01G081600 Gossypium hirsutum HOM05D004927 ORTHO05D005798 3.5e-14 82.4 73 61.6
Gorai.007G057300 Gossypium raimondii HOM05D004927 ORTHO05D005798 3.5e-14 82.4 73 61.6
A02p42760 Brassica napus HOM05D001512 ORTHO05D001574 7.8e-14 81.3 57 77.2
Gohir.D07G062100 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.0e-13 80.9 73 60.3
Gohir.D11G291800 Gossypium hirsutum HOM05D004927 ORTHO05D005798 3.0e-13 79.3 55 72.7
Oeu037712.1 Olea europaea HOM05D004927 ORTHO05D005798 3.6e-11 72.4 55 65.5
Hma1.2p1_2767F.1_g328170 Hydrangea macrophylla HOM05D004927 ORTHO05D005798 6.8e-10 68.2 80 60.0
Cfa018832 Carpinus fangiana HOM05D004927 ORTHO05D005798 2.0e-09 66.6 84 51.2
SEGI_01314 Sequoiadendron giganteum HOM05D004927 ORTHO05D005798 3.4e-09 65.9 45 73.3
Gohir.D09G247201 Gossypium hirsutum HOM05D004927 ORTHO05D005798 4.4e-09 65.5 51 66.7
Lsat_1_v5_gn_5_95420 Lactuca sativa HOM05D004927 ORTHO05D005798 5.8e-09 65.1 85 51.8
AUR62029623 Chenopodium quinoa HOM05D004927 ORTHO05D005798 3.2e-07 59.3 56 57.1
Cpa.g.sc13.128 Carica papaya HOM05D004927 ORTHO05D005798 4.6e-06 55.5 59 59.3


User provided reference genes

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