Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s2405 Capsella rubella HOM05D003199 ORTHO05D003528 1.0e-95 353.6 209 100.0
AT5G63300 Arabidopsis thaliana HOM05D003199 ORTHO05D003528 8.4e-45 184.5 114 87.7
AL8G40380 Arabidopsis lyrata HOM05D003199 ORTHO05D003528 1.2e-43 180.6 114 86.8
CARHR277140 Cardamine hirsuta HOM05D003199 ORTHO05D003528 7.3e-33 144.8 114 71.9
Thhalv10005605m.g Eutrema salsugineum HOM05D003199 ORTHO05D003528 1.7e-29 133.7 121 67.8
Sp2g26420 Schrenkiella parvula HOM05D003199 ORTHO05D003528 1.9e-28 130.2 128 64.1
Aa31LG1G18700 Aethionema arabicum HOM05D003199 ORTHO05D003528 5.1e-26 122.1 120 61.7
BcaC03g18193 Brassica carinata HOM05D003199 ORTHO05D003528 1.2e-22 110.9 113 62.8
C02p62560 Brassica napus HOM05D003199 ORTHO05D003528 1.2e-22 110.9 113 62.8
BolC2t12315H Brassica oleracea HOM05D003199 ORTHO05D003528 1.2e-22 110.9 113 62.8
Thecc.03G122900 Theobroma cacao HOM05D003199 ORTHO05D003528 1.9e-12 77.0 125 45.6
Gohir.A07G053400 Gossypium hirsutum HOM05D003199 ORTHO05D003528 4.6e-11 72.4 113 42.5
Gohir.D07G057800 Gossypium hirsutum HOM05D003199 ORTHO05D003528 1.3e-10 70.9 113 41.6
Nitab4.5_0002911g0010 Nicotiana tabacum HOM05D003199 ORTHO05D003528 2.3e-10 70.1 118 43.2
Gorai.001G061300 Gossypium raimondii HOM05D003199 ORTHO05D003528 3.9e-10 69.3 113 40.7
Duzib205G0007 Durio zibethinus HOM05D003199 ORTHO05D003528 1.5e-09 67.4 122 41.0
Nitab4.5_0000040g0380 Nicotiana tabacum HOM05D003199 ORTHO05D003528 5.7e-09 65.5 118 41.5
Sed0014935 Sechium edule HOM05D003199 ORTHO05D003528 1.6e-08 63.9 118 41.5
RcHm_v2.0_Chr2g0175441 Rosa chinensis HOM05D003199 ORTHO05D003528 2.2e-08 63.5 112 41.1
FvH4_6g53290 Fragaria vesca HOM05D003199 ORTHO05D003528 2.8e-08 63.2 108 40.7
FAN02G1758 Fragaria x ananassa HOM05D003199 ORTHO05D003528 3.7e-08 62.8 113 39.8
DCAR_026209 Daucus carota HOM05D003199 ORTHO05D003528 6.3e-08 62.0 114 39.5
Lj2g0014633 Lotus japonicus HOM05D003199 ORTHO05D003528 6.3e-08 62.0 118 40.7
TWI36G0480 Tripterygium wilfordii HOM05D003199 ORTHO05D003528 6.3e-08 62.0 111 40.5
CANSAT64G0211 Cannabis sativa HOM05D003199 ORTHO05D003528 8.2e-08 61.6 116 37.9
Sc07g0004150 Simmondsia chinensis HOM05D003199 ORTHO05D003528 8.2e-08 61.6 120 39.2
PGSC0003DMG400015257 Solanum tuberosum HOM05D003199 ORTHO05D003528 8.2e-08 61.6 97 40.2
unitig_52.g17653 Utricularia gibba HOM05D003199 ORTHO05D003528 8.2e-08 61.6 112 39.3
FAN05G2482 Fragaria x ananassa HOM05D003199 ORTHO05D003528 1.1e-07 61.2 113 39.8
FAN14G1306 Fragaria x ananassa HOM05D003199 ORTHO05D003528 1.1e-07 61.2 108 40.7
PGR142G2189 Punica granatum HOM05D003199 ORTHO05D003528 1.1e-07 61.2 116 38.8
BraA09t35967Z Brassica rapa HOM05D003199 ORTHO05D003528 1.4e-07 60.8 113 37.2
CAN.G1491.4 Capsicum annuum HOM05D003199 ORTHO05D003528 1.4e-07 60.8 119 35.3
Sabra16G0212600 Salix brachista HOM05D003199 ORTHO05D003528 1.4e-07 60.8 110 36.4
FAN04G2235 Fragaria x ananassa HOM05D003199 ORTHO05D003528 1.8e-07 60.5 54 50.0
Lalb_Chr24g0403341 Lupinus albus HOM05D003199 ORTHO05D003528 1.8e-07 60.5 117 34.2
ClCG05G013420 Citrullus lanatus HOM05D003199 ORTHO05D003528 2.4e-07 60.1 123 36.6
MELO3C014875.2 Cucumis melo HOM05D003199 ORTHO05D003528 2.4e-07 60.1 122 37.7
CsaV3_3G027140 Cucumis sativus L. HOM05D003199 ORTHO05D003528 2.4e-07 60.1 122 38.5
Actinidia36194 Actinidia chinensis HOM05D003199 ORTHO05D003528 3.1e-07 59.7 117 36.8
Prupe.3G305100 Prunus persica HOM05D003199 ORTHO05D003528 3.1e-07 59.7 119 36.1
CSS0036982 Camellia sinensis var. sinensis HOM05D003199 ORTHO05D003528 4.1e-07 59.3 110 40.0
Migut.F00072 Erythranthe guttata HOM05D003199 ORTHO05D003528 4.1e-07 59.3 118 35.6
Lj1g0002355 Lotus japonicus HOM05D003199 ORTHO05D003528 4.1e-07 59.3 109 37.6
Gohir.A05G339100 Gossypium hirsutum HOM05D003199 ORTHO05D003528 5.3e-07 58.9 117 36.8
Gohir.D04G077600 Gossypium hirsutum HOM05D003199 ORTHO05D003528 5.3e-07 58.9 117 36.8
Gorai.012G087400 Gossypium raimondii HOM05D003199 ORTHO05D003528 6.9e-07 58.5 117 36.8
THA.LOC104823979 Tarenaya hassleriana HOM05D003199 ORTHO05D003528 9.0e-07 58.2 126 38.1
Glyma.19G090000 Glycine max HOM05D003199 ORTHO05D003528 1.2e-06 57.8 112 38.4
BcaC03g17429 Brassica carinata HOM05D003199 ORTHO05D003528 1.5e-06 57.4 115 36.5
BolC2t11446H Brassica oleracea HOM05D003199 ORTHO05D003528 1.5e-06 57.4 115 36.5
Ciclev10016867m.g Citrus clementina HOM05D003199 ORTHO05D003528 1.5e-06 57.4 52 57.7
RcHm_v2.0_Chr2g0088911 Rosa chinensis HOM05D003199 ORTHO05D003528 2.0e-06 57.0 113 38.1
RcHm_v2.0_Chr2g0088961 Rosa chinensis HOM05D003199 ORTHO05D003528 2.0e-06 57.0 113 38.1
VMungo1383G1719 Vigna mungo HOM05D003199 ORTHO05D003528 2.0e-06 57.0 118 36.4
BraA02t08519Z Brassica rapa HOM05D003199 ORTHO05D003528 2.6e-06 56.6 118 33.9
Cc07_g00740 Coffea canephora HOM05D003199 ORTHO05D003528 2.6e-06 56.6 121 33.9
RcHm_v2.0_Chr2g0089001 Rosa chinensis HOM05D003199 ORTHO05D003528 2.6e-06 56.6 113 38.1
Actinidia05917 Actinidia chinensis HOM05D003199 ORTHO05D003528 3.4e-06 56.2 124 36.3
C02p53770 Brassica napus HOM05D003199 ORTHO05D003528 3.4e-06 56.2 115 33.0
Duzib147G1480 Durio zibethinus HOM05D003199 ORTHO05D003528 3.4e-06 56.2 119 39.5
FvH4_5g07520 Fragaria vesca HOM05D003199 ORTHO05D003528 3.4e-06 56.2 53 47.2
FAN08G2398 Fragaria x ananassa HOM05D003199 ORTHO05D003528 3.4e-06 56.2 52 50.0
Potri.001G331600 Populus trichocarpa HOM05D003199 ORTHO05D003528 3.4e-06 56.2 115 36.5
BcaB04g19427 Brassica carinata HOM05D003199 ORTHO05D003528 4.5e-06 55.8 113 34.5
BcaB07g30185 Brassica carinata HOM05D003199 ORTHO05D003528 4.5e-06 55.8 118 35.6
Peaxi162Scf00420g00566 Petunia axillaris HOM05D003199 ORTHO05D003528 4.5e-06 55.8 119 35.3
A02p35140 Brassica napus HOM05D003199 ORTHO05D003528 5.9e-06 55.5 118 33.9
CARHR148360 Cardamine hirsuta HOM05D003199 ORTHO05D003528 5.9e-06 55.5 120 37.5
Glyma.05G044800 Glycine max HOM05D003199 ORTHO05D003528 5.9e-06 55.5 59 45.8
Hma1.2p1_1278F.1_g272370 Hydrangea macrophylla HOM05D003199 ORTHO05D003528 5.9e-06 55.5 79 38.0
THA.LOC104825617 Tarenaya hassleriana HOM05D003199 ORTHO05D003528 5.9e-06 55.5 115 40.0
arahy.Tifrunner.gnm1.ann1.S1U1UA Arachis hypogaea HOM05D003199 ORTHO05D003528 7.7e-06 55.1 52 51.9
arahy.Tifrunner.gnm1.ann1.VRH5T3 Arachis hypogaea HOM05D003199 ORTHO05D003528 7.7e-06 55.1 52 51.9
CDE12G0833 Ceratophyllum demersum HOM05D003199 ORTHO05D003528 7.7e-06 55.1 49 53.1
Solyc02g068090.3 Solanum lycopersicum HOM05D003199 ORTHO05D003528 7.7e-06 55.1 123 30.9
Sopen02g017200 Solanum pennellii HOM05D003199 ORTHO05D003528 7.7e-06 55.1 123 31.7
CAN.G473.92 Capsicum annuum HOM05D003199 ORTHO05D003528 1.0e-05 54.7 110 35.5
Cfa007237 Carpinus fangiana HOM05D003199 ORTHO05D003528 1.0e-05 54.7 110 35.5
CiPaw.03G054500 Carya illinoinensis HOM05D003199 ORTHO05D003528 1.0e-05 54.7 112 34.8
Dinv38468 Davidia involucrata HOM05D003199 ORTHO05D003528 1.0e-05 54.7 52 51.9
MD17G1012600 Malus domestica HOM05D003199 ORTHO05D003528 1.0e-05 54.7 112 37.5
Nitab4.5_0010637g0020 Nicotiana tabacum HOM05D003199 ORTHO05D003528 1.0e-05 54.7 118 38.1
RcHm_v2.0_Chr7g0191151 Rosa chinensis HOM05D003199 ORTHO05D003528 1.0e-05 54.7 80 37.5
Thecc.04G034700 Theobroma cacao HOM05D003199 ORTHO05D003528 1.0e-05 54.7 119 38.7


User provided reference genes

Program Settings