Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s2396 Capsella rubella HOM05D005390 ORTHO05D007086 0.0e+00 1229.9 660 100.0
AL8G40290 Arabidopsis lyrata HOM05D005390 ORTHO05D007086 0.0e+00 1139.8 660 93.2
Sp2g26330 Schrenkiella parvula HOM05D005390 ORTHO05D007086 0.0e+00 1115.5 660 88.5
Thhalv10003779m.g Eutrema salsugineum HOM05D005390 ORTHO05D007086 0.0e+00 1115.1 661 90.6
AT5G63200 Arabidopsis thaliana HOM05D005390 ORTHO05D007086 0.0e+00 1084.3 661 90.5
Aa31LG1G18770 Aethionema arabicum HOM05D005390 ORTHO05D007086 1.4e-311 1072.4 662 87.0
BolC9t53836H Brassica oleracea HOM05D005390 ORTHO05D007086 6.7e-298 1026.9 663 85.4
C09p09230 Brassica napus HOM05D005390 ORTHO05D007086 7.4e-297 1023.5 663 85.1
BraA09t36469Z Brassica rapa HOM05D005390 ORTHO05D007086 5.0e-293 1010.7 662 83.8
A09p08180 Brassica napus HOM05D005390 ORTHO05D007086 9.3e-292 1006.5 662 83.4
THA.LOC104818200 Tarenaya hassleriana HOM05D005390 ORTHO05D007086 4.3e-281 971.1 664 81.2
Thecc.03G120800 Theobroma cacao HOM05D005390 ORTHO05D007086 2.5e-236 822.4 647 69.9
Gorai.008G204100 Gossypium raimondii HOM05D005390 ORTHO05D007086 1.4e-231 806.6 622 71.2
QL10p005602 Quercus lobata HOM05D005390 ORTHO05D007086 4.1e-231 805.1 642 68.7
Gohir.D12G190300 Gossypium hirsutum HOM05D005390 ORTHO05D007086 5.4e-231 804.7 622 71.2
Gohir.A12G187300 Gossypium hirsutum HOM05D005390 ORTHO05D007086 2.0e-230 802.7 622 71.1
Manes.06G113700 Manihot esculenta HOM05D005390 ORTHO05D007086 3.0e-229 798.9 642 67.9
CANSAT80G2255 Cannabis sativa HOM05D005390 ORTHO05D007086 3.6e-227 792.0 632 68.7
Duzib205G1771 Durio zibethinus HOM05D005390 ORTHO05D007086 2.3e-226 789.3 650 68.3
Cfa018904 Carpinus fangiana HOM05D005390 ORTHO05D007086 2.6e-225 785.8 653 63.7
GSVIVG01007574001 Vitis vinifera HOM05D005390 ORTHO05D007086 9.8e-225 783.9 654 65.9
Lj9C473T10 Lonicera japonica HOM05D005390 ORTHO05D007086 4.9e-224 781.6 641 66.9
TWI09G0451 Tripterygium wilfordii HOM05D005390 ORTHO05D007086 6.6e-221 771.2 616 65.7
TWI39G0214 Tripterygium wilfordii HOM05D005390 ORTHO05D007086 1.5e-220 770.0 616 65.4
Actinidia19375 Actinidia chinensis HOM05D005390 ORTHO05D007086 3.3e-220 768.8 617 67.7
ClCG03G003390 Citrullus lanatus HOM05D005390 ORTHO05D007086 1.4e-218 763.5 641 64.7
Haze_07289 Corylus avellana HOM05D005390 ORTHO05D007086 2.3e-218 762.7 695 60.1
TAR374G1738 Trochodendron aralioides HOM05D005390 ORTHO05D007086 3.1e-218 762.3 622 63.2
CsaV3_1G009190 Cucumis sativus L. HOM05D005390 ORTHO05D007086 3.4e-217 758.8 645 64.2
Nn4g22507 Nelumbo nucifera HOM05D005390 ORTHO05D007086 5.8e-217 758.1 622 66.2
Cpa.g.sc4.44 Carica papaya HOM05D005390 ORTHO05D007086 2.2e-216 756.1 657 63.9
Rhsim08G0183100 Rhododendron simsii HOM05D005390 ORTHO05D007086 1.9e-215 753.1 618 62.3
HanXRQChr09g0272781 Helianthus annuus HOM05D005390 ORTHO05D007086 1.2e-211 740.3 635 59.8
Eucgr.B00166 Eucalyptus grandis HOM05D005390 ORTHO05D007086 4.0e-210 735.3 623 60.7
Lsat_1_v5_gn_4_78320 Lactuca sativa HOM05D005390 ORTHO05D007086 5.2e-210 734.9 646 63.6
Hma1.2p1_0983F.1_g244080 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 2.6e-209 732.6 542 67.9
PGR083G1300 Punica granatum HOM05D005390 ORTHO05D007086 3.4e-209 732.3 614 61.1
Nitab4.5_0014349g0010 Nicotiana tabacum HOM05D005390 ORTHO05D007086 1.7e-208 729.9 644 58.5
Dinv38486 Davidia involucrata HOM05D005390 ORTHO05D007086 2.9e-208 729.2 531 68.7
Psat5g139480 Pisum sativum HOM05D005390 ORTHO05D007086 4.9e-208 728.4 614 61.6
ECA232G3921 Erigeron canadensis HOM05D005390 ORTHO05D007086 8.4e-208 727.6 629 64.4
PGSC0003DMG400027069 Solanum tuberosum HOM05D005390 ORTHO05D007086 1.1e-207 727.2 648 58.8
Prupe.5G160000 Prunus persica HOM05D005390 ORTHO05D007086 3.2e-207 725.7 645 64.3
EL10Ac7g18053 Beta vulgaris HOM05D005390 ORTHO05D007086 4.2e-207 725.3 651 61.9
COL.COLO4_04551 Corchorus olitorius HOM05D005390 ORTHO05D007086 4.2e-207 725.3 628 65.6
Medtr3g075240 Medicago truncatula HOM05D005390 ORTHO05D007086 5.4e-207 724.9 632 59.7
Peaxi162Scf00763g00330 Petunia axillaris HOM05D005390 ORTHO05D007086 5.4e-207 724.9 623 60.4
Solyc06g071850.3 Solanum lycopersicum HOM05D005390 ORTHO05D007086 9.3e-207 724.2 648 58.3
Glyma.06G174300 Glycine max HOM05D005390 ORTHO05D007086 1.6e-206 723.4 618 64.9
Lj1g0026120 Lotus japonicus HOM05D005390 ORTHO05D007086 2.1e-206 723.0 630 64.6
vmacro19255 Vaccinium macrocarpon HOM05D005390 ORTHO05D007086 2.7e-206 722.6 678 57.2
Ca_16101_v3 Cicer arietinum L. HOM05D005390 ORTHO05D007086 1.7e-205 719.9 622 60.6
Ca_30077_v3 Cicer arietinum L. HOM05D005390 ORTHO05D007086 1.7e-205 719.9 622 60.6
MD06G1160400 Malus domestica HOM05D005390 ORTHO05D007086 3.9e-205 718.8 620 66.1
Glyma.04G191600 Glycine max HOM05D005390 ORTHO05D007086 6.6e-205 718.0 620 60.8
Sopen06g028130 Solanum pennellii HOM05D005390 ORTHO05D007086 6.6e-205 718.0 650 57.8
Phvul.009G170000 Phaseolus vulgaris HOM05D005390 ORTHO05D007086 8.7e-205 717.6 619 61.1
Ciclev10019194m.g Citrus clementina HOM05D005390 ORTHO05D007086 2.5e-204 716.1 658 59.0
DCAR_016426 Daucus carota HOM05D005390 ORTHO05D007086 2.5e-204 716.1 561 64.2
Aqoxy3G01354 Aquilegia oxysepala HOM05D005390 ORTHO05D007086 2.8e-203 712.6 626 59.7
FAN13G2995 Fragaria x ananassa HOM05D005390 ORTHO05D007086 7.6e-201 704.5 624 63.9
Nitab4.5_0000003g0930 Nicotiana tabacum HOM05D005390 ORTHO05D007086 7.6e-201 704.5 647 57.2
Sabra12G0066700 Salix brachista HOM05D005390 ORTHO05D007086 7.6e-201 704.5 644 62.4
AUR62025748 Chenopodium quinoa HOM05D005390 ORTHO05D007086 2.2e-200 703.0 572 67.1
MSTRG.11518 Avicennia marina HOM05D005390 ORTHO05D007086 3.8e-200 702.2 663 60.6
Cc04_g10660 Coffea canephora HOM05D005390 ORTHO05D007086 6.4e-200 701.4 574 61.0
PSO017G5335 Papaver somniferum HOM05D005390 ORTHO05D007086 8.4e-200 701.0 620 59.5
PSO478G4661 Papaver somniferum HOM05D005390 ORTHO05D007086 1.9e-199 699.9 620 59.0
Potri.012G092000 Populus trichocarpa HOM05D005390 ORTHO05D007086 3.2e-199 699.1 650 61.7
Oeu011587.1 Olea europaea HOM05D005390 ORTHO05D007086 4.2e-199 698.7 577 62.4
FAN18G2367 Fragaria x ananassa HOM05D005390 ORTHO05D007086 1.6e-198 696.8 628 63.4
RcHm_v2.0_Chr7g0191501 Rosa chinensis HOM05D005390 ORTHO05D007086 1.6e-198 696.8 615 64.9
TPR.G38664 Trifolium pratense HOM05D005390 ORTHO05D007086 6.0e-198 694.9 617 58.8
Lalb_Chr11g0069761 Lupinus albus HOM05D005390 ORTHO05D007086 7.9e-198 694.5 626 62.6
arahy.Tifrunner.gnm1.ann1.EKVH9G Arachis hypogaea HOM05D005390 ORTHO05D007086 1.0e-197 694.1 585 61.5
AUR62001260 Chenopodium quinoa HOM05D005390 ORTHO05D007086 9.0e-194 681.0 626 61.8
FAN08G1670 Fragaria x ananassa HOM05D005390 ORTHO05D007086 1.2e-193 680.6 627 63.0
Sed0027546 Sechium edule HOM05D005390 ORTHO05D007086 1.3e-192 677.2 521 68.7
SGA_v2.0_scaffold25G10792 Striga asiatica HOM05D005390 ORTHO05D007086 6.4e-192 674.9 677 56.7
CAN.G1046.1 Capsicum annuum HOM05D005390 ORTHO05D007086 2.7e-190 669.5 543 65.9
MELO3C002325.2 Cucumis melo HOM05D005390 ORTHO05D007086 3.2e-183 646.0 674 56.4
unitig_22.g5443 Utricularia gibba HOM05D005390 ORTHO05D007086 2.5e-180 636.3 622 58.7
Hund05621 Selenicereus undatus HOM05D005390 ORTHO05D007086 4.8e-179 632.1 627 58.4
Atru.BG.198.p Acer truncatum HOM05D005390 ORTHO05D007086 1.4e-178 630.6 507 69.0
ATR0824G019 Amborella trichopoda HOM05D005390 ORTHO05D007086 3.8e-176 622.5 631 53.7
Zm00001eb144210 Zea mays HOM05D005390 ORTHO05D007086 3.4e-169 599.4 612 53.9
SEGI_06673 Sequoiadendron giganteum HOM05D005390 ORTHO05D007086 1.8e-162 577.0 621 50.2
Os01g0906600 Oryza sativa ssp. japonica HOM05D005390 ORTHO05D007086 5.9e-161 572.0 608 55.4
CSS0013940 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 1.4e-157 560.8 456 62.9
Sc22g0003910 Simmondsia chinensis HOM05D005390 ORTHO05D007086 2.2e-155 553.5 458 62.0
FvH4_5g07030 Fragaria vesca HOM05D005390 ORTHO05D007086 3.5e-145 519.6 464 60.6
Nn1g05493 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.3e-144 517.7 545 53.6
SMO356G0210 Selaginella moellendorffii HOM05D005390 ORTHO05D007086 3.0e-141 506.5 612 50.3
Mapoly0013s0178 Marchantia polymorpha HOM05D005390 ORTHO05D007086 5.9e-137 492.3 630 47.6
Migut.O00224 Erythranthe guttata HOM05D005390 ORTHO05D007086 9.5e-135 485.0 614 48.2
HPP92_001962 Vanilla planifolia HOM05D005390 ORTHO05D007086 1.2e-132 478.0 477 52.6
arahy.Tifrunner.gnm1.ann1.V8X883 Arachis hypogaea HOM05D005390 ORTHO05D007086 1.1e-130 471.5 623 49.4
FAN04G1107 Fragaria x ananassa HOM05D005390 ORTHO05D007086 4.3e-127 459.5 364 70.1
CiPaw.12G034400 Carya illinoinensis HOM05D005390 ORTHO05D007086 6.8e-125 452.2 398 61.3
Nn7g37481 Nelumbo nucifera HOM05D005390 ORTHO05D007086 6.8e-125 452.2 416 59.6
AagrBONN_evm.TU.Sc2ySwM_228.344 Anthoceros agrestis HOM05D005390 ORTHO05D007086 4.4e-124 449.5 625 42.6
Nn8g39688 Nelumbo nucifera HOM05D005390 ORTHO05D007086 3.2e-122 443.4 332 66.0
VMungo1309G2389 Vigna mungo HOM05D005390 ORTHO05D007086 4.4e-116 422.9 354 60.5
SalBow5G1843 Salvia bowleyana HOM05D005390 ORTHO05D007086 3.9e-112 409.8 502 51.6
Oeu053506.1 Olea europaea HOM05D005390 ORTHO05D007086 6.0e-105 386.0 316 59.5
Nn5g27251 Nelumbo nucifera HOM05D005390 ORTHO05D007086 4.7e-94 349.7 515 41.7
MBI11_g46067_MAGBIO Magnolia biondii HOM05D005390 ORTHO05D007086 3.2e-82 310.5 315 55.6
VMungo1309G0829 Vigna mungo HOM05D005390 ORTHO05D007086 4.6e-81 306.6 277 62.1
Nn8g40909 Nelumbo nucifera HOM05D005390 ORTHO05D007086 4.8e-78 296.6 205 68.3
CARHR043650 Cardamine hirsuta HOM05D005390 ORTHO05D007086 7.1e-74 282.7 183 80.3
Nn5g28724 Nelumbo nucifera HOM05D005390 ORTHO05D007086 6.2e-70 269.6 205 63.9
CARHR277060 Cardamine hirsuta HOM05D005390 ORTHO05D007086 2.4e-69 267.7 176 93.8
Nn1g08373 Nelumbo nucifera HOM05D005390 ORTHO05D007086 3.8e-67 260.4 207 60.4
MBI11_g46351_MAGBIO Magnolia biondii HOM05D005390 ORTHO05D007086 3.2e-66 257.3 282 53.5
Nn2g15275 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.1e-61 242.3 197 60.4
CiPaw.12G034500 Carya illinoinensis HOM05D005390 ORTHO05D007086 5.0e-59 233.4 196 71.9
CsaV3_3G015420 Cucumis sativus L. HOM05D005390 ORTHO05D007086 8.8e-56 222.6 349 40.1
CDE06G0744 Ceratophyllum demersum HOM05D005390 ORTHO05D007086 7.2e-50 203.0 174 63.8
CSS0032502 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 5.1e-48 196.8 161 74.5
CSS0049807 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 6.7e-48 196.4 161 74.5
Hma1.2p1_2683F.1_g326880 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 1.1e-45 189.1 168 57.7
Nn8g40618 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.7e-41 174.5 121 67.8
CsaV3_3G015410 Cucumis sativus L. HOM05D005390 ORTHO05D007086 7.4e-39 166.4 264 43.9
Hma1.2p1_2683F.1_g326890 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 1.3e-35 155.6 115 68.7
RcHm_v2.0_Chr5g0027631 Rosa chinensis HOM05D005390 ORTHO05D007086 8.0e-33 146.4 168 54.8
Nn1g03252 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.7e-30 138.7 93 72.0
Nn6g32370 Nelumbo nucifera HOM05D005390 ORTHO05D007086 3.5e-28 131.0 101 60.4
Nn1g06247 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.5e-26 125.6 97 62.9
Nn5g26726 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.5e-23 115.5 80 68.8
Psat7g117320 Pisum sativum HOM05D005390 ORTHO05D004709 1.4e-21 109.0 143 42.7
Nn1g06248 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.6e-20 105.5 78 66.7
CDE06G2390 Ceratophyllum demersum HOM05D005390 ORTHO05D007086 5.0e-19 100.5 109 47.7
CAN.G1302.1 Capsicum annuum HOM05D005390 ORTHO05D002902 8.6e-19 99.8 73 58.9
Nn2g14552 Nelumbo nucifera HOM05D005390 ORTHO05D028071 7.2e-18 96.7 58 69.0
CAN.G534.23 Capsicum annuum HOM05D005390 ORTHO05D007086 1.6e-17 95.5 65 64.6
RcHm_v2.0_Chr5g0027621 Rosa chinensis HOM05D005390 ORTHO05D007086 8.9e-16 89.7 82 58.5
A06p18430 Brassica napus HOM05D005390 ORTHO05D028071 2.6e-15 88.2 46 87.0
A09p53940 Brassica napus HOM05D005390 ORTHO05D028071 9.8e-15 86.3 46 84.8
BraA09t40810Z Brassica rapa HOM05D005390 ORTHO05D028071 9.8e-15 86.3 46 84.8
CAN.G755.13 Capsicum annuum HOM05D005390 ORTHO05D007086 2.9e-11 74.7 89 46.1
TAR381G0053 Trochodendron aralioides HOM05D000018 ORTHO05D001172 9.5e-10 69.7 86 45.3


User provided reference genes

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