Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s2389 Capsella rubella HOM05D006995 ORTHO05D008870 9.5e-39 163.3 100 100.0
AL8G40200 Arabidopsis lyrata HOM05D006995 ORTHO05D008870 3.1e-37 158.3 100 90.0
CARHR276970 Cardamine hirsuta HOM05D006995 ORTHO05D008870 2.6e-36 155.2 100 87.0
Sp2g26260 Schrenkiella parvula HOM05D006995 ORTHO05D008870 3.4e-36 154.8 100 79.0
AT5G63135 Arabidopsis thaliana HOM05D006995 ORTHO05D008870 1.7e-35 152.5 100 90.0
Thhalv10023776m.g Eutrema salsugineum HOM05D006995 ORTHO05D008870 5.4e-34 147.5 100 85.0
THA.LOC104798964 Tarenaya hassleriana HOM05D006995 ORTHO05D008870 9.2e-34 146.7 100 83.0
Aa31LG1G18840 Aethionema arabicum HOM05D006995 ORTHO05D008870 1.6e-33 146.0 100 74.0
BraA06t25934Z Brassica rapa HOM05D006995 ORTHO05D008870 4.6e-33 144.4 102 79.4
A06p29860 Brassica napus HOM05D006995 ORTHO05D008870 2.3e-32 142.1 102 78.4
BcaB02g09725 Brassica carinata HOM05D006995 ORTHO05D008870 3.0e-32 141.7 101 80.2
A09p08140 Brassica napus HOM05D006995 ORTHO05D008870 8.7e-32 140.2 102 83.3
BolC3t18607H Brassica oleracea HOM05D006995 ORTHO05D008870 1.1e-31 139.8 102 77.5
BraA09t36465Z Brassica rapa HOM05D006995 ORTHO05D008870 3.3e-31 138.3 73 90.4
BcaC04g23358 Brassica carinata HOM05D006995 ORTHO05D008870 2.4e-29 132.1 72 87.5
C09p09200 Brassica napus HOM05D006995 ORTHO05D008870 2.4e-29 132.1 72 87.5
BolC9t53833H Brassica oleracea HOM05D006995 ORTHO05D008870 2.4e-29 132.1 72 87.5
BcaC01g02557 Brassica carinata HOM05D006995 ORTHO05D008870 1.3e-27 126.3 102 71.6
C03p63500 Brassica napus HOM05D006995 ORTHO05D008870 1.3e-27 126.3 102 71.6
Ca_16134_v3 Cicer arietinum L. HOM05D006995 ORTHO05D008870 6.0e-25 117.5 100 76.0
Lj1g0014247 Lotus japonicus HOM05D006995 ORTHO05D008870 7.8e-25 117.1 100 73.0
Potri.012G085100 Populus trichocarpa HOM05D006995 ORTHO05D008870 7.8e-25 117.1 100 69.0
Glyma.04G187800 Glycine max HOM05D006995 ORTHO05D008870 1.0e-24 116.7 100 73.0
Manes.14G061000 Manihot esculenta HOM05D006995 ORTHO05D008870 1.3e-24 116.3 100 71.0
Glyma.06G177900 Glycine max HOM05D006995 ORTHO05D008870 3.0e-24 115.2 100 73.0
MD14G1172000 Malus domestica HOM05D006995 ORTHO05D008870 3.0e-24 115.2 100 66.0
Lj9C443G5 Lonicera japonica HOM05D006995 ORTHO05D008870 3.9e-24 114.8 100 65.0
Peaxi162Scf00089g01427 Petunia axillaris HOM05D006995 ORTHO05D008870 3.9e-24 114.8 100 58.0
MSTRG.23164 Avicennia marina HOM05D006995 ORTHO05D008870 5.1e-24 114.4 100 66.0
Cc04_g11640 Coffea canephora HOM05D006995 ORTHO05D008870 5.1e-24 114.4 100 65.0
Prupe.5G166100 Prunus persica HOM05D006995 ORTHO05D008870 1.1e-23 113.2 100 61.0
Phvul.009G174500 Phaseolus vulgaris HOM05D006995 ORTHO05D008870 1.5e-23 112.8 100 71.0
Psat5g116320 Pisum sativum HOM05D006995 ORTHO05D008870 2.5e-23 112.1 100 65.0
TWI23G0026 Tripterygium wilfordii HOM05D006995 ORTHO05D008870 5.6e-23 110.9 100 68.0
arahy.Tifrunner.gnm1.ann1.W5ECLN Arachis hypogaea HOM05D006995 ORTHO05D008870 7.3e-23 110.5 100 69.0
arahy.Tifrunner.gnm1.ann1.X0DT51 Arachis hypogaea HOM05D006995 ORTHO05D008870 7.3e-23 110.5 100 69.0
Hma1.2p1_0046F.1_g027080 Hydrangea macrophylla HOM05D006995 ORTHO05D008870 7.3e-23 110.5 100 65.0
Nitab4.5_0001793g0100 Nicotiana tabacum HOM05D006995 ORTHO05D008870 7.3e-23 110.5 100 71.0
Nitab4.5_0003703g0070 Nicotiana tabacum HOM05D006995 ORTHO05D008870 7.3e-23 110.5 100 71.0
Lalb_Chr08g0236711 Lupinus albus HOM05D006995 ORTHO05D008870 9.6e-23 110.2 100 73.0
SalBow5G1368 Salvia bowleyana HOM05D006995 ORTHO05D008870 1.3e-22 109.8 100 67.0
SalBow5G3606 Salvia bowleyana HOM05D006995 ORTHO05D008870 1.3e-22 109.8 100 67.0
TWI39G0505 Tripterygium wilfordii HOM05D006995 ORTHO05D008870 1.3e-22 109.8 100 71.0
Actinidia24594 Actinidia chinensis HOM05D006995 ORTHO05D008870 1.6e-22 109.4 100 64.0
FAN08G0020 Fragaria x ananassa HOM05D006995 ORTHO05D008870 1.6e-22 109.4 100 63.0
MSTRG.11491 Avicennia marina HOM05D006995 ORTHO05D008870 2.1e-22 109.0 100 65.0
FvH4_5g06250 Fragaria vesca HOM05D006995 ORTHO05D008870 2.1e-22 109.0 100 63.0
RcHm_v2.0_Chr7g0192611 Rosa chinensis HOM05D006995 ORTHO05D008870 2.1e-22 109.0 100 63.0
ClCG01G013460 Citrullus lanatus HOM05D006995 ORTHO05D008870 2.8e-22 108.6 100 73.0
MELO3C002295.2 Cucumis melo HOM05D006995 ORTHO05D008870 2.8e-22 108.6 100 73.0
CSS0043708 Camellia sinensis var. sinensis HOM05D006995 ORTHO05D008870 3.6e-22 108.2 100 55.0
Dinv20602 Davidia involucrata HOM05D006995 ORTHO05D008870 4.8e-22 107.8 100 56.0
FAN18G0637 Fragaria x ananassa HOM05D006995 ORTHO05D008870 4.8e-22 107.8 100 62.0
CsaV3_1G008810 Cucumis sativus L. HOM05D006995 ORTHO05D008870 6.2e-22 107.5 100 73.0
Eucgr.K02801 Eucalyptus grandis HOM05D006995 ORTHO05D008870 6.2e-22 107.5 98 71.4
Oeu008873.1 Olea europaea HOM05D006995 ORTHO05D008870 8.1e-22 107.1 100 61.0
QL10p006993 Quercus lobata HOM05D006995 ORTHO05D008870 1.1e-21 106.7 98 72.4
unitig_26.g8807 Utricularia gibba HOM05D006995 ORTHO05D008870 1.4e-21 106.3 100 56.0
Solyc03g112290.2 Solanum lycopersicum HOM05D006995 ORTHO05D008870 1.8e-21 105.9 100 70.0
Sopen03g031390 Solanum pennellii HOM05D006995 ORTHO05D008870 1.8e-21 105.9 100 70.0
TAR629G0625 Trochodendron aralioides HOM05D006995 ORTHO05D008870 1.8e-21 105.9 100 63.0
PGSC0003DMG400018185 Solanum tuberosum HOM05D006995 ORTHO05D008870 4.0e-21 104.8 100 69.0
VMungo1309G2685 Vigna mungo HOM05D006995 ORTHO05D008870 5.3e-21 104.4 92 66.3
Lsat_1_v5_gn_5_14241 Lactuca sativa HOM05D006995 ORTHO05D008870 2.0e-20 102.4 98 64.3
CAN.G338.27 Capsicum annuum HOM05D006995 ORTHO05D008870 2.6e-20 102.1 100 68.0
Migut.O00152 Erythranthe guttata HOM05D006995 ORTHO05D008870 2.6e-20 102.1 93 57.0
Sed0018383 Sechium edule HOM05D006995 ORTHO05D008870 4.5e-20 101.3 100 71.0
Medtr3g077017 Medicago truncatula HOM05D006995 ORTHO05D008870 5.8e-20 100.9 100 72.0
Duzib205G0595 Durio zibethinus HOM05D006995 ORTHO05D008870 9.9e-20 100.1 100 71.0
Cpa.g.sc159.33 Carica papaya HOM05D006995 ORTHO05D008870 1.3e-19 99.8 100 70.0
Atru.chr9.2568 Acer truncatum HOM05D006995 ORTHO05D008870 2.9e-19 98.6 69 69.6
CiPaw.11G020900 Carya illinoinensis HOM05D006995 ORTHO05D008870 2.9e-19 98.6 93 72.0
Nn4g22611 Nelumbo nucifera HOM05D006995 ORTHO05D008870 4.9e-19 97.8 100 57.0
CANSAT80G0726 Cannabis sativa HOM05D006995 ORTHO05D008870 6.4e-19 97.4 100 67.0
HanXRQChr04g0101331 Helianthus annuus HOM05D006995 ORTHO05D008870 6.4e-19 97.4 100 66.0
Gohir.A12G199700 Gossypium hirsutum HOM05D006995 ORTHO05D008870 1.1e-18 96.7 100 70.0
Gorai.008G217400 Gossypium raimondii HOM05D006995 ORTHO05D008870 1.1e-18 96.7 100 70.0
Thecc.03G024900 Theobroma cacao HOM05D006995 ORTHO05D008870 1.4e-18 96.3 72 65.3
BolC3t18603H Brassica oleracea HOM05D006995 ORTHO05D008870 6.0e-17 90.9 48 91.7
Gohir.D12G202400 Gossypium hirsutum HOM05D006995 ORTHO05D008870 7.9e-17 90.5 100 70.0
PGR044G0957 Punica granatum HOM05D006995 ORTHO05D008870 1.3e-16 89.7 91 59.3
Ca_22795_v3 Cicer arietinum L. HOM05D001863 ORTHO05D001962 3.0e-16 88.6 78 60.3
CiPaw.12G030600 Carya illinoinensis HOM05D006995 ORTHO05D008870 5.1e-16 87.8 100 50.0
Hund02782 Selenicereus undatus HOM05D006995 ORTHO05D008870 8.7e-16 87.0 100 53.0
Aqoxy5G03762 Aquilegia oxysepala HOM05D006995 ORTHO05D008870 2.1e-14 82.4 100 50.0
vmacro16643 Vaccinium macrocarpon HOM05D006995 ORTHO05D008870 2.8e-14 82.0 131 46.6
Sc04g0001540 Simmondsia chinensis HOM05D006995 ORTHO05D008870 3.7e-14 81.6 100 49.0
SGA_v2.0_scaffold90G27846 Striga asiatica HOM05D006995 ORTHO05D008870 6.2e-14 80.9 53 71.7
ATR0824G277 Amborella trichopoda HOM05D006995 ORTHO05D008870 1.4e-13 79.7 100 49.0
Ah.11g042030 Amaranthus hybridus HOM05D006995 ORTHO05D008870 2.0e-12 75.9 90 54.4
EL10Ac5g10662 Beta vulgaris HOM05D006995 ORTHO05D008870 2.6e-12 75.5 100 51.0
COL.COLO4_05561 Corchorus olitorius HOM05D006995 ORTHO05D008870 3.4e-12 75.1 48 75.0
Sabra12G0061300 Salix brachista HOM05D006995 ORTHO05D008870 5.8e-12 74.3 48 72.9
ATR0743G118 Amborella trichopoda HOM05D006995 ORTHO05D008870 1.0e-11 73.6 100 46.0
Haze_07576 Corylus avellana HOM05D006995 ORTHO05D008870 1.0e-11 73.6 48 70.8
HPP92_024272 Vanilla planifolia HOM05D006995 ORTHO05D008870 1.0e-11 73.6 100 49.0
BcaC01g05868 Brassica carinata HOM05D001146 ORTHO05D000973 7.1e-10 67.4 56 69.6
C03p21590 Brassica napus HOM05D001146 ORTHO05D000973 7.1e-10 67.4 56 69.6
C07p20090 Brassica napus HOM05D001146 ORTHO05D000973 7.1e-10 67.4 56 69.6
BolC7t42530H Brassica oleracea HOM05D001146 ORTHO05D000973 7.1e-10 67.4 56 69.6
Zm00001eb245930 Zea mays HOM05D006995 ORTHO05D008870 7.1e-10 67.4 100 46.0
Os02g0593400 Oryza sativa ssp. japonica HOM05D006995 ORTHO05D008870 9.3e-10 67.0 100 47.0
BolC3t14543H Brassica oleracea HOM05D006995 ORTHO05D104637 1.2e-09 66.6 43 81.4
Zm00001eb183600 Zea mays HOM05D006995 ORTHO05D008870 1.2e-09 66.6 100 46.0
Ah.11g051120 Amaranthus hybridus HOM05D006995 ORTHO05D008870 2.1e-09 65.9 80 57.5
C06p19720 Brassica napus HOM05D001146 ORTHO05D000973 2.7e-09 65.5 41 80.5
AUR62008151 Chenopodium quinoa HOM05D006995 ORTHO05D008870 1.3e-08 63.2 57 57.9
ECA247G3417 Erigeron canadensis HOM05D006995 ORTHO05D008870 1.3e-08 63.2 93 50.5
MELO3C035410.2 Cucumis melo HOM05D006995 ORTHO05D167536 6.7e-08 60.8 45 64.4
SHI24880 Sapria himalayana HOM05D006995 ORTHO05D008870 6.7e-08 60.8 65 53.8
BcaC04g20222 Brassica carinata HOM05D001146 ORTHO05D000973 3.3e-07 58.5 50 66.0
C09p46490 Brassica napus HOM05D001146 ORTHO05D000973 3.3e-07 58.5 50 66.0
C04p43920 Brassica napus HOM05D001146 ORTHO05D000973 4.3e-07 58.2 30 86.7
BolC4t25973H Brassica oleracea HOM05D001146 ORTHO05D000973 4.3e-07 58.2 30 86.7
BcaC09g51351 Brassica carinata HOM05D006995 ORTHO05D008870 5.7e-07 57.8 50 56.0
GSVIVG01007657001 Vitis vinifera HOM05D006995 ORTHO05D008870 7.4e-07 57.4 61 59.0
BolC7t43312H Brassica oleracea HOM05D001146 ORTHO05D000973 2.1e-06 55.8 30 83.3


User provided reference genes

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