Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s2376 Capsella rubella HOM05D005107 ORTHO05D006200 7.0e-198 693.7 346 100.0
AL8G40070 Arabidopsis lyrata HOM05D005107 ORTHO05D006200 3.3e-187 658.3 346 93.9
AT5G63050 Arabidopsis thaliana HOM05D005107 ORTHO05D006200 4.0e-185 651.4 346 93.1
Sp2g26180 Schrenkiella parvula HOM05D005107 ORTHO05D006200 2.4e-182 642.1 346 90.2
Thhalv10004512m.g Eutrema salsugineum HOM05D005107 ORTHO05D006200 3.3e-179 631.7 346 89.6
CARHR276850 Cardamine hirsuta HOM05D005107 ORTHO05D006200 8.4e-175 617.1 346 89.0
BolC9t53818H Brassica oleracea HOM05D005107 ORTHO05D006200 1.6e-162 576.2 347 80.1
A09p08000 Brassica napus HOM05D005107 ORTHO05D006200 3.2e-158 562.0 338 80.2
C09p09050 Brassica napus HOM05D005107 ORTHO05D006200 3.2e-158 562.0 338 80.2
Aa31LG11G620 Aethionema arabicum HOM05D005107 ORTHO05D006200 1.6e-157 559.7 338 81.4
BraA06t25929Z Brassica rapa HOM05D005107 ORTHO05D006200 1.4e-145 520.0 347 76.9
BcaB04g19949 Brassica carinata HOM05D005107 ORTHO05D006200 2.0e-144 516.2 292 86.0
BolC3t18614H Brassica oleracea HOM05D005107 ORTHO05D006200 7.6e-144 514.2 347 77.2
A06p29810 Brassica napus HOM05D005107 ORTHO05D006200 1.9e-142 509.6 347 76.4
BolC8t50877H Brassica oleracea HOM05D005107 ORTHO05D006200 5.5e-142 508.1 347 76.1
C08p32660 Brassica napus HOM05D005107 ORTHO05D006200 1.8e-137 493.0 340 75.3
BraA09t36452Z Brassica rapa HOM05D005107 ORTHO05D006200 5.9e-136 488.0 304 79.3
THA.LOC104818212 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 1.9e-134 483.0 346 69.7
BcaC01g02550 Brassica carinata HOM05D005107 ORTHO05D006200 2.7e-133 479.2 347 72.6
C03p63570 Brassica napus HOM05D005107 ORTHO05D006200 4.8e-122 441.8 309 75.1
THA.LOC104821481 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 1.2e-120 437.2 348 65.8
Cpa.g.sc153.5 Carica papaya HOM05D005107 ORTHO05D006200 7.2e-110 401.4 346 57.2
Atru.chr9.2518 Acer truncatum HOM05D005107 ORTHO05D006200 1.8e-108 396.7 346 58.7
Thecc.03G018700 Theobroma cacao HOM05D005107 ORTHO05D006200 2.3e-108 396.4 346 57.8
Dinv20630 Davidia involucrata HOM05D005107 ORTHO05D006200 1.7e-103 380.2 346 55.2
Gohir.A12G272600 Gossypium hirsutum HOM05D005107 ORTHO05D006200 3.8e-103 379.0 346 54.3
Gorai.008G293700 Gossypium raimondii HOM05D005107 ORTHO05D006200 8.5e-103 377.9 346 54.0
Gohir.D12G273300 Gossypium hirsutum HOM05D005107 ORTHO05D006200 1.1e-102 377.5 346 53.8
COL.COLO4_30099 Corchorus olitorius HOM05D005107 ORTHO05D006200 1.5e-102 377.1 347 56.5
GSVIVG01007704001 Vitis vinifera HOM05D005107 ORTHO05D006200 1.0e-100 370.9 347 54.2
MD14G1176600 Malus domestica HOM05D005107 ORTHO05D006200 7.5e-99 364.8 346 54.3
Prupe.5G170500 Prunus persica HOM05D005107 ORTHO05D006200 3.7e-98 362.5 346 54.3
CSS0000196 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 2.4e-97 359.8 346 52.3
QL10p008945 Quercus lobata HOM05D005107 ORTHO05D006200 4.1e-97 359.0 347 53.6
TAR374G1030 Trochodendron aralioides HOM05D005107 ORTHO05D006200 2.0e-96 356.7 346 53.5
Duzib205G0074 Durio zibethinus HOM05D005107 ORTHO05D006200 2.7e-96 356.3 338 53.6
Ciclev10021009m.g Citrus clementina HOM05D005107 ORTHO05D006200 7.7e-96 354.8 348 54.6
Eucgr.B00249 Eucalyptus grandis HOM05D005107 ORTHO05D006200 2.3e-95 353.2 346 52.0
RcHm_v2.0_Chr7g0193181 Rosa chinensis HOM05D005107 ORTHO05D006200 3.3e-94 349.4 356 54.2
FvH4_5g05630 Fragaria vesca HOM05D005107 ORTHO05D006200 1.2e-93 347.4 346 53.2
Gorai.001G071700 Gossypium raimondii HOM05D005107 ORTHO05D006200 1.6e-93 347.1 346 50.9
BcaB02g09719 Brassica carinata HOM05D005107 ORTHO05D006200 8.0e-93 344.7 345 58.8
Gohir.D07G068200 Gossypium hirsutum HOM05D005107 ORTHO05D006200 8.0e-93 344.7 346 50.6
Hma1.2p1_0046F.1_g026720 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 1.0e-92 344.4 346 52.3
Hma1.2p1_0592F.1_g185565 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 5.2e-92 342.0 346 51.2
Potri.015G079700 Populus trichocarpa HOM05D005107 ORTHO05D006200 6.8e-92 341.7 346 51.4
TWI23G1004 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 7.5e-91 338.2 346 51.2
Manes.06G107100 Manihot esculenta HOM05D005107 ORTHO05D006200 1.3e-90 337.4 351 51.3
Sabra12G0063800 Salix brachista HOM05D005107 ORTHO05D006200 1.3e-90 337.4 346 51.7
Gohir.A07G063500 Gossypium hirsutum HOM05D005107 ORTHO05D006200 1.7e-90 337.0 346 49.7
MD06G1170900 Malus domestica HOM05D005107 ORTHO05D006200 1.8e-89 333.6 346 50.9
CiPaw.11G023500 Carya illinoinensis HOM05D005107 ORTHO05D006200 2.4e-89 333.2 354 51.1
Potri.012G088600 Populus trichocarpa HOM05D005107 ORTHO05D006200 4.1e-89 332.4 346 50.9
CSS0014290 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 2.0e-88 330.1 347 50.4
Nitab4.5_0001207g0070 Nicotiana tabacum HOM05D005107 ORTHO05D006200 4.5e-88 328.9 345 50.4
CANSAT80G2623 Cannabis sativa HOM05D005107 ORTHO05D006200 1.0e-87 327.8 346 49.7
Sabra15G0104000 Salix brachista HOM05D005107 ORTHO05D006200 8.6e-87 324.7 356 49.2
Nitab4.5_0003229g0090 Nicotiana tabacum HOM05D005107 ORTHO05D006200 1.9e-86 323.6 329 51.4
CSS0028022 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 4.7e-85 318.9 347 49.6
Sc22g0001200 Simmondsia chinensis HOM05D005107 ORTHO05D006200 1.8e-84 317.0 346 47.7
Lj1g0017341 Lotus japonicus HOM05D005107 ORTHO05D006200 6.8e-84 315.1 346 46.8
PGR083G1692 Punica granatum HOM05D005107 ORTHO05D006200 6.8e-84 315.1 350 49.4
PGSC0003DMG401018164 Solanum tuberosum HOM05D005107 ORTHO05D006200 1.2e-83 314.3 346 48.3
TAR622G1391 Trochodendron aralioides HOM05D005107 ORTHO05D006200 1.2e-83 314.3 346 49.4
CAN.G1166.21 Capsicum annuum HOM05D005107 ORTHO05D006200 3.4e-83 312.8 346 48.6
Ca_21938_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 1.3e-82 310.8 346 48.8
Haze_07542 Corylus avellana HOM05D005107 ORTHO05D006200 1.3e-82 310.8 290 56.6
Nn2g12593 Nelumbo nucifera HOM05D005107 ORTHO05D006200 4.9e-82 308.9 347 48.7
Sopen03g031750 Solanum pennellii HOM05D005107 ORTHO05D006200 6.4e-82 308.5 346 48.0
Glyma.04G185700 Glycine max HOM05D005107 ORTHO05D006200 2.4e-81 306.6 346 47.4
arahy.Tifrunner.gnm1.ann1.5AH6W7 Arachis hypogaea HOM05D005107 ORTHO05D006200 5.4e-81 305.4 346 47.1
arahy.Tifrunner.gnm1.ann1.6379ZA Arachis hypogaea HOM05D005107 ORTHO05D006200 9.2e-81 304.7 346 46.8
FAN04G1011 Fragaria x ananassa HOM05D005107 ORTHO05D006200 1.2e-80 304.3 285 56.5
Solyc03g112670.3 Solanum lycopersicum HOM05D005107 ORTHO05D006200 1.2e-80 304.3 346 48.3
ClCG01G013290 Citrullus lanatus HOM05D005107 ORTHO05D006200 4.6e-80 302.4 347 47.0
TWI14G0467 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 4.6e-80 302.4 346 47.1
FAN18G1528 Fragaria x ananassa HOM05D005107 ORTHO05D006200 1.0e-79 301.2 285 55.8
Peaxi162Scf00089g01740 Petunia axillaris HOM05D005107 ORTHO05D006200 1.3e-79 300.8 331 47.1
FAN08G1807 Fragaria x ananassa HOM05D005107 ORTHO05D006200 2.3e-79 300.1 286 55.6
Lj4g0022030 Lotus japonicus HOM05D005107 ORTHO05D006200 5.0e-79 298.9 346 46.8
Glyma.06G180400 Glycine max HOM05D005107 ORTHO05D006200 1.1e-78 297.7 346 46.5
Medtr4g105500 Medicago truncatula HOM05D005107 ORTHO05D006200 5.6e-78 295.4 326 48.8
Phvul.009G176100 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 7.3e-78 295.0 346 45.7
TPR.G37531 Trifolium pratense HOM05D005107 ORTHO05D006200 9.5e-78 294.7 346 47.4
Migut.O00123 Erythranthe guttata HOM05D005107 ORTHO05D006200 1.6e-77 293.9 347 46.4
Sed0009116 Sechium edule HOM05D005107 ORTHO05D006200 6.2e-77 292.0 347 46.1
Lalb_Chr08g0236621 Lupinus albus HOM05D005107 ORTHO05D006200 8.0e-77 291.6 348 45.1
VMungo1215G1987 Vigna mungo HOM05D005107 ORTHO05D006200 8.0e-77 291.6 325 48.0
Manes.14G063800 Manihot esculenta HOM05D005107 ORTHO05D006200 1.4e-76 290.8 313 49.2
Aqoxy3G02846 Aquilegia oxysepala HOM05D005107 ORTHO05D006200 4.0e-76 289.3 346 47.1
MELO3C002281.2 Cucumis melo HOM05D005107 ORTHO05D006200 5.2e-76 288.9 349 45.6
VMungo1309G0437 Vigna mungo HOM05D005107 ORTHO05D006200 5.2e-76 288.9 346 45.1
Phvul.003G202200 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 6.8e-76 288.5 346 47.1
SalBow5G2679 Salvia bowleyana HOM05D005107 ORTHO05D006200 1.2e-75 287.7 349 44.7
Nn4g22685 Nelumbo nucifera HOM05D005107 ORTHO05D006200 7.5e-75 285.0 351 46.2
Nn4g22690 Nelumbo nucifera HOM05D005107 ORTHO05D006200 7.5e-75 285.0 351 46.2
Oeu016417.1 Olea europaea HOM05D005107 ORTHO05D006200 8.3e-74 281.6 331 45.3
Ca_16156_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 1.1e-73 281.2 348 44.0
MBI10_g44387_MAGBIO Magnolia biondii HOM05D005107 ORTHO05D006200 1.1e-73 281.2 318 46.2
Medtr3g077490 Medicago truncatula HOM05D005107 ORTHO05D006200 1.4e-73 280.8 348 44.5
PSO832G2872 Papaver somniferum HOM05D005107 ORTHO05D006200 1.2e-72 277.7 347 44.7
Psat4g058600 Pisum sativum HOM05D005107 ORTHO05D006200 1.2e-72 277.7 346 43.6
PSO063G3062 Papaver somniferum HOM05D005107 ORTHO05D006200 4.6e-72 275.8 348 44.3
TWI39G0316 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 2.3e-71 273.5 352 43.8
SalBow6G4644 Salvia bowleyana HOM05D005107 ORTHO05D006200 3.9e-71 272.7 346 42.5
Cc06_g17290 Coffea canephora HOM05D005107 ORTHO05D006200 1.5e-70 270.8 338 46.2
MSTRG.23144 Avicennia marina HOM05D005107 ORTHO05D006200 5.6e-70 268.9 347 42.4
Psat5g115520 Pisum sativum HOM05D005107 ORTHO05D006200 2.1e-69 266.9 348 43.1
TPR.G14919 Trifolium pratense HOM05D005107 ORTHO05D006200 4.0e-68 262.7 346 42.5
Peaxi162Scf00255g00912 Petunia axillaris HOM05D005107 ORTHO05D006200 1.2e-67 261.2 347 42.1
HanXRQChr05g0154601 Helianthus annuus HOM05D005107 ORTHO05D006200 3.4e-67 259.6 350 44.0
Migut.D01962 Erythranthe guttata HOM05D005107 ORTHO05D006200 1.7e-66 257.3 352 41.8
AUR62018143 Chenopodium quinoa HOM05D005107 ORTHO05D006200 2.2e-66 256.9 283 47.3
FAN13G2858 Fragaria x ananassa HOM05D005107 ORTHO05D008464 2.9e-66 256.5 260 53.1
Sed0010155 Sechium edule HOM05D005107 ORTHO05D006200 8.3e-66 255.0 347 41.5
Ah.10g031930 Amaranthus hybridus HOM05D005107 ORTHO05D006200 1.9e-65 253.8 351 42.7
CsaV3_1G008660 Cucumis sativus L. HOM05D005107 ORTHO05D006200 3.2e-65 253.1 347 43.2
ECA246G1934 Erigeron canadensis HOM05D005107 ORTHO05D006200 1.2e-64 251.1 345 44.1
FAN18G1595 Fragaria x ananassa HOM05D005107 ORTHO05D008464 1.2e-64 251.1 260 52.3
AUR62042560 Chenopodium quinoa HOM05D005107 ORTHO05D006200 2.1e-64 250.4 283 46.6
ClCG06G017120 Citrullus lanatus HOM05D005107 ORTHO05D006200 2.7e-64 250.0 327 42.8
EL10Ac2g03054 Beta vulgaris HOM05D005107 ORTHO05D006200 3.5e-64 249.6 346 39.9
Dinv38563 Davidia involucrata HOM05D003072 ORTHO05D008464 5.1e-63 245.7 262 50.0
HanXRQChr08g0235041 Helianthus annuus HOM05D005107 ORTHO05D006200 8.6e-63 245.0 353 41.1
DCAR_016047 Daucus carota HOM05D005107 ORTHO05D006200 4.3e-62 242.7 346 41.0
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 2.8e-61 240.0 324 40.4
Lj5A126T86 Lonicera japonica HOM05D005107 ORTHO05D006200 8.1e-61 238.4 292 43.5
Lsat_1_v5_gn_5_15301 Lactuca sativa HOM05D005107 ORTHO05D006200 3.1e-60 236.5 344 40.7
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 4.0e-60 236.1 346 39.0
CDE05G1562 Ceratophyllum demersum HOM05D005107 ORTHO05D006200 6.8e-60 235.3 282 43.3
CiPaw.12G028400 Carya illinoinensis HOM05D005107 ORTHO05D006200 7.6e-59 231.9 337 39.5
unitig_26.g9615 Utricularia gibba HOM05D005107 ORTHO05D006200 1.4e-57 227.6 283 43.8
HPP92_001300 Vanilla planifolia HOM05D005107 ORTHO05D006200 3.2e-57 226.5 284 44.4
MELO3C026284.2 Cucumis melo HOM05D005107 ORTHO05D006200 3.3e-54 216.5 328 37.5
Eucgr.J01240 Eucalyptus grandis HOM05D005107 ORTHO05D006200 5.8e-51 205.7 137 64.2
Hund13172 Selenicereus undatus HOM05D005107 ORTHO05D006200 3.5e-48 196.4 270 40.7
Oeu024703.1 Olea europaea HOM05D005107 ORTHO05D006200 1.3e-47 194.5 201 48.3
Eucgr.C04410 Eucalyptus grandis HOM05D005107 ORTHO05D006200 5.1e-47 192.6 137 61.3
Eucgr.C03135 Eucalyptus grandis HOM05D005107 ORTHO05D006200 3.3e-46 189.9 129 62.0
BcaC04g23368 Brassica carinata HOM05D005107 ORTHO05D006200 3.8e-42 176.4 103 77.7
SGA_v2.0_scaffold90G27886 Striga asiatica HOM05D005107 ORTHO05D006200 5.1e-39 166.0 213 39.9
ECA232G4933 Erigeron canadensis HOM05D005107 ORTHO05D006200 1.5e-38 164.5 284 35.9
ECA232G2224 Erigeron canadensis HOM05D005107 ORTHO05D006200 2.1e-37 160.6 251 37.5
HanXRQChr02g0035961 Helianthus annuus HOM05D005107 ORTHO05D006200 7.9e-32 142.1 303 35.0
Lsat_1_v5_gn_1_28200 Lactuca sativa HOM05D005107 ORTHO05D006200 2.5e-30 137.1 329 32.2
Duzib068G0452 Durio zibethinus HOM05D005107 ORTHO05D006200 1.0e-18 98.6 120 48.3
SEGI_21940 Sequoiadendron giganteum HOM05D024261 ORTHO05D006200 5.5e-09 66.2 254 25.2
Hma1.2p1_0522F.1_g171880 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 1.1e-06 58.5 44 59.1


User provided reference genes

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